Functional clusters 
Information
- Type
- GO term
- Identifier
- GO:0050789
- Description
- regulation of biological process
Cluster overview
Exact GO match
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 3 | CH_aly_56 | 53 | 224 | 0.000447159 |
| Arabidopsis thaliana | 1 | 2 | CH_ath_34 | 24 | 83 | 0.000938262 |
| Theobroma cacao | Tc01 | 4 | CH_tca_24 | 38 | 268 | 0.0000000076295 |
| Theobroma cacao | Tc02 | 3 | CH_tca_50 | 46 | 245 | 0.000000000079182 |
| Theobroma cacao | Tc02 | 4 | CH_tca_30 | 36 | 256 | 0.0000000316474 |
Child GO matches
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value | GO | Description |
|---|---|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_138 | 3 | 17 | 0.00000406438 | GO:0045723 | positive regulation of fatty acid biosynthetic process |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_88 | 11 | 18 | 0.000000098079 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_28 | 11 | 18 | 0.000000098079 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_150 | 3 | 6 | 0.00000669421 | GO:0031540 | regulation of anthocyanin biosynthetic process |
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_50 | 47 | 256 | 0.000189488 | GO:0019222 | regulation of metabolic process |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_2 | 43 | 243 | 0.00000440042 | GO:0019222 | regulation of metabolic process |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_167 | 3 | 4 | 0.0000162588 | GO:0016441 | posttranscriptional gene silencing |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_33 | 7 | 12 | 0.000000000000150674 | GO:0009966 | regulation of signal transduction |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_191 | 2 | 2 | 0.0000631373 | GO:0031936 | negative regulation of chromatin silencing |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_192 | 2 | 2 | 0.0000631373 | GO:0035067 | negative regulation of histone acetylation |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_24 | 8 | 53 | 0.00000000000000142695 | GO:0002764 | immune response-regulating signaling pathway |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_229 | 2 | 2 | 0.000189412 | GO:0040014 | regulation of multicellular organism growth |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_8 | 7 | 8 | 0.000435338 | GO:0010556 | regulation of macromolecule biosynthetic process |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_226 | 2 | 2 | 0.000189412 | GO:0045604 | regulation of epidermal cell differentiation |
| Arabidopsis thaliana | 1 | 1 | CH_ath_321 | 5 | 5 | 0.000812386 | GO:0007165 | signal transduction |
| Arabidopsis thaliana | 1 | 1 | CH_ath_248 | 17 | 50 | 0.000150718 | GO:0010468 | regulation of gene expression |
| Arabidopsis thaliana | 1 | 1 | CH_ath_142 | 3 | 3 | 0.00000116911 | GO:0031540 | regulation of anthocyanin biosynthetic process |
| Arabidopsis thaliana | 1 | 1 | CH_ath_221 | 4 | 6 | 0.0000565404 | GO:0016458 | gene silencing |
| Arabidopsis thaliana | 1 | 1 | CH_ath_246 | 7 | 10 | 0.000146209 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Arabidopsis thaliana | 1 | 1 | CH_ath_287 | 2 | 2 | 0.000357122 | GO:0042306 | regulation of protein import into nucleus |
| Arabidopsis thaliana | 1 | 1 | CH_ath_217 | 6 | 6 | 0.0000408063 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Arabidopsis thaliana | 1 | 2 | CH_ath_29 | 3 | 4 | 0.000675446 | GO:0035195 | gene silencing by miRNA |
| Arabidopsis thaliana | 1 | 2 | CH_ath_17 | 4 | 6 | 0.0000576652 | GO:0016458 | gene silencing |
| Arabidopsis thaliana | 1 | 3 | CH_ath_45 | 40 | 199 | 0.00000158296 | GO:0010468 | regulation of gene expression |
| Arabidopsis thaliana | 1 | 3 | CH_ath_62 | 48 | 268 | 0.0000183424 | GO:0019222 | regulation of metabolic process |
| Arabidopsis thaliana | 1 | 4 | CH_ath_7 | 43 | 237 | 0.000000414947 | GO:0019222 | regulation of metabolic process |
| Arabidopsis thaliana | 2 | 1 | CH_ath_123 | 3 | 3 | 0.000000185995 | GO:0080050 | regulation of seed development |
| Arabidopsis thaliana | 2 | 1 | CH_ath_300 | 3 | 3 | 0.00048827 | GO:0016441 | posttranscriptional gene silencing |
| Arabidopsis thaliana | 3 | 1 | CH_ath_90 | 4 | 4 | 0.00000000462774 | GO:0007346 | regulation of mitotic cell cycle |
| Arabidopsis thaliana | 3 | 1 | CH_ath_183 | 4 | 5 | 0.0000118801 | GO:0051246 | regulation of protein metabolic process |
| Arabidopsis thaliana | 3 | 1 | CH_ath_144 | 4 | 57 | 0.00000124594 | GO:0002764 | immune response-regulating signaling pathway |
| Arabidopsis thaliana | 3 | 1 | CH_ath_237 | 3 | 3 | 0.0000919136 | GO:0009873 | ethylene mediated signaling pathway |
| Arabidopsis thaliana | 4 | 1 | CH_ath_263 | 2 | 2 | 0.000178561 | GO:0040014 | regulation of multicellular organism growth |
| Arabidopsis thaliana | 4 | 1 | CH_ath_308 | 2 | 2 | 0.000595203 | GO:0035196 | production of miRNAs involved in gene silencing by miRNA |
| Arabidopsis thaliana | 5 | 1 | CH_ath_288 | 2 | 2 | 0.000357122 | GO:0042306 | regulation of protein import into nucleus |
| Arabidopsis thaliana | 5 | 1 | CH_ath_327 | 2 | 2 | 0.000892804 | GO:0006916 | anti-apoptosis |
| Arabidopsis thaliana | 5 | 1 | CH_ath_260 | 2 | 2 | 0.000178561 | GO:0045604 | regulation of epidermal cell differentiation |
| Arabidopsis thaliana | 5 | 3 | CH_ath_96 | 59 | 300 | 0.000853368 | GO:0050794 | regulation of cellular process |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_148 | 2 | 2 | 0.000450298 | GO:0006275 | regulation of DNA replication |
| Brachypodium distachyon | Bd4 | 1 | CH_bdi_1 | 13 | 17 | 2.38236e-32 | GO:0009734 | auxin mediated signaling pathway |
| Brachypodium distachyon | Bd4 | 3 | CH_bdi_2 | 13 | 17 | 2.38236e-32 | GO:0009734 | auxin mediated signaling pathway |
| Carica papaya | supercontig_131 | 1 | CH_cpa_141 | 2 | 2 | 0.000582496 | GO:0010112 | regulation of systemic acquired resistance |
| Carica papaya | supercontig_27 | 1 | CH_cpa_79 | 3 | 5 | 0.000051417 | GO:0042127 | regulation of cell proliferation |
| Carica papaya | supercontig_8 | 1 | CH_cpa_111 | 2 | 3 | 0.000291234 | GO:0010018 | far-red light signaling pathway |
| Carica papaya | supercontig_80 | 1 | CH_cpa_124 | 8 | 12 | 0.000376507 | GO:0045449 | regulation of cellular transcription |
| Carica papaya | supercontig_85 | 1 | CH_cpa_142 | 2 | 2 | 0.000582496 | GO:0040020 | regulation of meiosis |
| Carica papaya | supercontig_89 | 1 | CH_cpa_30 | 8 | 14 | 0.00000000598389 | GO:0007242 | intracellular signaling cascade |
| Carica papaya | supercontig_89 | 3 | CH_cpa_8 | 10 | 31 | 0.00000000739718 | GO:0007242 | intracellular signaling cascade |
| Chlamydomonas reinhardtii | chromosome_10 | 1 | CH_cre_8 | 4 | 4 | 0.000000000371012 | GO:0016481 | negative regulation of cellular transcription |
| Fragaria vesca | LG1 | 1 | CH_fve_181 | 2 | 2 | 0.0000598784 | GO:0034756 | regulation of iron ion transport |
| Fragaria vesca | LG2 | 1 | CH_fve_272 | 2 | 2 | 0.000598784 | GO:0010267 | production of ta-siRNAs involved in RNA interference |
| Fragaria vesca | LG2 | 1 | CH_fve_166 | 6 | 7 | 0.0000367483 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Fragaria vesca | LG2 | 1 | CH_fve_204 | 11 | 26 | 0.000145477 | GO:0045449 | regulation of cellular transcription |
| Fragaria vesca | LG2 | 3 | CH_fve_52 | 11 | 26 | 0.000145477 | GO:0045449 | regulation of cellular transcription |
| Fragaria vesca | LG3 | 1 | CH_fve_253 | 3 | 3 | 0.000425311 | GO:0051246 | regulation of protein metabolic process |
| Fragaria vesca | LG3 | 1 | CH_fve_218 | 2 | 2 | 0.000179635 | GO:0050792 | regulation of viral reproduction |
| Fragaria vesca | LG3 | 1 | CH_fve_256 | 3 | 3 | 0.000441881 | GO:0007264 | small GTPase mediated signal transduction |
| Fragaria vesca | LG5 | 1 | CH_fve_129 | 7 | 9 | 0.00000429505 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Fragaria vesca | LG6 | 1 | CH_fve_215 | 2 | 2 | 0.000179635 | GO:0010363 | regulation of plant-type hypersensitive response |
| Fragaria vesca | scf0513158 | 1 | CH_fve_77 | 3 | 4 | 0.0000000860483 | GO:0080050 | regulation of seed development |
| Glycine max | Gm01 | 1 | CH_gma_304 | 2 | 2 | 0.000431928 | GO:0009747 | hexokinase-dependent signaling |
| Glycine max | Gm03 | 1 | CH_gma_262 | 7 | 9 | 0.000190953 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Glycine max | Gm03 | 1 | CH_gma_50 | 5 | 5 | 0.0000000000497838 | GO:0031348 | negative regulation of defense response |
| Glycine max | Gm04 | 1 | CH_gma_273 | 2 | 2 | 0.000259157 | GO:0035067 | negative regulation of histone acetylation |
| Glycine max | Gm05 | 1 | CH_gma_279 | 2 | 2 | 0.000259157 | GO:0042306 | regulation of protein import into nucleus |
| Glycine max | Gm06 | 1 | CH_gma_274 | 2 | 2 | 0.000259157 | GO:0035067 | negative regulation of histone acetylation |
| Glycine max | Gm07 | 1 | CH_gma_32 | 6 | 6 | 0.0000000000000473107 | GO:0031348 | negative regulation of defense response |
| Glycine max | Gm08 | 1 | CH_gma_280 | 2 | 2 | 0.000259157 | GO:0042306 | regulation of protein import into nucleus |
| Glycine max | Gm09 | 1 | CH_gma_278 | 2 | 2 | 0.000259157 | GO:0010422 | regulation of brassinosteroid biosynthetic process |
| Glycine max | Gm11 | 1 | CH_gma_326 | 2 | 2 | 0.000647892 | GO:0048209 | regulation of vesicle targeting, to, from or within Golgi |
| Glycine max | Gm13 | 1 | CH_gma_179 | 7 | 7 | 0.00000567858 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Glycine max | Gm16 | 1 | CH_gma_177 | 4 | 4 | 0.00000489812 | GO:0051246 | regulation of protein metabolic process |
| Glycine max | Gm17 | 1 | CH_gma_242 | 5 | 18 | 0.000127879 | GO:0051246 | regulation of protein metabolic process |
| Glycine max | Gm18 | 1 | CH_gma_325 | 2 | 2 | 0.000647892 | GO:0048209 | regulation of vesicle targeting, to, from or within Golgi |
| Glycine max | Gm18 | 1 | CH_gma_277 | 2 | 2 | 0.000259157 | GO:0010422 | regulation of brassinosteroid biosynthetic process |
| Glycine max | Gm18 | 3 | CH_gma_44 | 10 | 16 | 0.00000206216 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Glycine max | Gm20 | 1 | CH_gma_39 | 4 | 4 | 0.0000000000012088 | GO:0080050 | regulation of seed development |
| Lotus japonicus | chr0 | 1 | CH_lja_59 | 5 | 29 | 0.00000190531 | GO:0048580 | regulation of post-embryonic development |
| Lotus japonicus | chr1 | 1 | CH_lja_33 | 3 | 6 | 0.000000141106 | GO:0016246 | RNA interference |
| Lotus japonicus | chr2 | 1 | CH_lja_98 | 2 | 2 | 0.0000685848 | GO:0010359 | regulation of anion channel activity |
| Lotus japonicus | chr2 | 1 | CH_lja_131 | 3 | 23 | 0.000249368 | GO:0080135 | regulation of cellular response to stress |
| Lotus japonicus | chr3 | 1 | CH_lja_145 | 2 | 2 | 0.000411509 | GO:0050792 | regulation of viral reproduction |
| Lotus japonicus | chr4 | 1 | CH_lja_142 | 2 | 4 | 0.00041148 | GO:0035196 | production of miRNAs involved in gene silencing by miRNA |
| Lotus japonicus | chr4 | 1 | CH_lja_126 | 2 | 2 | 0.000205754 | GO:0042306 | regulation of protein import into nucleus |
| Lotus japonicus | chr4 | 2 | CH_lja_35 | 2 | 4 | 0.000655364 | GO:0042549 | photosystem II stabilization |
| Lotus japonicus | chr5 | 1 | CH_lja_99 | 2 | 2 | 0.0000685848 | GO:0043069 | negative regulation of programmed cell death |
| Malus domestica | 1 | 1 | CH_mdo_120 | 2 | 2 | 0.0000461585 | GO:0048209 | regulation of vesicle targeting, to, from or within Golgi |
| Malus domestica | 1 | 1 | CH_mdo_87 | 10 | 17 | 0.00000471535 | GO:0045449 | regulation of cellular transcription |
| Malus domestica | 1 | 3 | CH_mdo_22 | 10 | 17 | 0.00000471535 | GO:0045449 | regulation of cellular transcription |
| Malus domestica | 10 | 1 | CH_mdo_177 | 2 | 2 | 0.000276951 | GO:0050792 | regulation of viral reproduction |
| Malus domestica | 14 | 1 | CH_mdo_175 | 2 | 2 | 0.000276951 | GO:0010363 | regulation of plant-type hypersensitive response |
| Malus domestica | 14 | 1 | CH_mdo_190 | 2 | 2 | 0.000461585 | GO:0032350 | regulation of hormone metabolic process |
| Malus domestica | 15 | 1 | CH_mdo_108 | 3 | 5 | 0.0000217211 | GO:0006306 | DNA methylation |
| Malus domestica | 4 | 1 | CH_mdo_7 | 7 | 36 | 0.000000000000478782 | GO:0002764 | immune response-regulating signaling pathway |
| Malus domestica | 6 | 1 | CH_mdo_205 | 2 | 2 | 0.000692377 | GO:0010310 | regulation of hydrogen peroxide metabolic process |
| Malus domestica | 7 | 1 | CH_mdo_118 | 2 | 2 | 0.0000461585 | GO:0043489 | RNA stabilization |
| Malus domestica | 7 | 1 | CH_mdo_164 | 8 | 13 | 0.000227803 | GO:0045449 | regulation of cellular transcription |
| Malus domestica | 8 | 1 | CH_mdo_173 | 2 | 2 | 0.000276951 | GO:0010018 | far-red light signaling pathway |
| Manihot esculenta | scaffold03079 | 1 | CH_mes_97 | 2 | 2 | 0.0000949127 | GO:0048209 | regulation of vesicle targeting, to, from or within Golgi |
| Manihot esculenta | scaffold03569 | 1 | CH_mes_20 | 4 | 4 | 0.0000000000384811 | GO:0017148 | negative regulation of translation |
| Manihot esculenta | scaffold03614 | 1 | CH_mes_146 | 2 | 2 | 0.000569476 | GO:0010310 | regulation of hydrogen peroxide metabolic process |
| Manihot esculenta | scaffold04443 | 1 | CH_mes_120 | 2 | 2 | 0.000284738 | GO:0043489 | RNA stabilization |
| Manihot esculenta | scaffold07575 | 1 | CH_mes_143 | 2 | 2 | 0.000569476 | GO:0006446 | regulation of translational initiation |
| Medicago truncatula | 1 | 1 | CH_mtr_260 | 2 | 2 | 0.0000350134 | GO:0043069 | negative regulation of programmed cell death |
| Medicago truncatula | 1 | 1 | CH_mtr_401 | 3 | 5 | 0.000694385 | GO:0051246 | regulation of protein metabolic process |
| Medicago truncatula | 1 | 1 | CH_mtr_282 | 6 | 9 | 0.0000566195 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Medicago truncatula | 1 | 1 | CH_mtr_305 | 2 | 2 | 0.00010504 | GO:0000077 | DNA damage checkpoint |
| Medicago truncatula | 1 | 3 | CH_mtr_93 | 24 | 171 | 0.00000287453 | GO:0045449 | regulation of cellular transcription |
| Medicago truncatula | 2 | 1 | CH_mtr_367 | 2 | 5 | 0.000350116 | GO:0006917 | induction of apoptosis |
| Medicago truncatula | 3 | 1 | CH_mtr_416 | 2 | 2 | 0.000980375 | GO:0048015 | phosphoinositide-mediated signaling |
| Medicago truncatula | 3 | 1 | CH_mtr_111 | 8 | 9 | 0.00000000142264 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Medicago truncatula | 5 | 1 | CH_mtr_3 | 13 | 37 | 6.84887e-31 | GO:0002764 | immune response-regulating signaling pathway |
| Medicago truncatula | 5 | 1 | CH_mtr_227 | 5 | 66 | 0.00000969036 | GO:0002764 | immune response-regulating signaling pathway |
| Medicago truncatula | 5 | 1 | CH_mtr_163 | 4 | 28 | 0.000000184248 | GO:0032012 | regulation of ARF protein signal transduction |
| Medicago truncatula | 5 | 1 | CH_mtr_19 | 9 | 50 | 1.93963e-19 | GO:0009962 | regulation of flavonoid biosynthetic process |
| Medicago truncatula | 5 | 1 | CH_mtr_363 | 2 | 3 | 0.000315111 | GO:0010529 | negative regulation of transposition |
| Medicago truncatula | 5 | 1 | CH_mtr_151 | 3 | 4 | 0.0000000735543 | GO:0010371 | regulation of gibberellin biosynthetic process |
| Medicago truncatula | 5 | 3 | CH_mtr_4 | 13 | 37 | 6.84887e-31 | GO:0002764 | immune response-regulating signaling pathway |
| Medicago truncatula | 6 | 1 | CH_mtr_342 | 3 | 7 | 0.000210561 | GO:0002764 | immune response-regulating signaling pathway |
| Medicago truncatula | 7 | 1 | CH_mtr_275 | 7 | 17 | 0.0000479443 | GO:0007165 | signal transduction |
| Medicago truncatula | 8 | 1 | CH_mtr_170 | 4 | 14 | 0.000000393617 | GO:0032312 | regulation of ARF GTPase activity |
| Medicago truncatula | 8 | 1 | CH_mtr_198 | 4 | 25 | 0.00000221567 | GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| Medicago truncatula | 8 | 1 | CH_mtr_223 | 3 | 3 | 0.00000746609 | GO:0006306 | DNA methylation |
| Medicago truncatula | 8 | 1 | CH_mtr_239 | 3 | 7 | 0.0000141521 | GO:0010337 | regulation of salicylic acid metabolic process |
| Medicago truncatula | AC140545.26 | 1 | CH_mtr_396 | 3 | 4 | 0.000603727 | GO:0007264 | small GTPase mediated signal transduction |
| Medicago truncatula | CU013523.3 | 1 | CH_mtr_112 | 8 | 9 | 0.00000000142264 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Oryza sativa ssp. japonica | 1 | 1 | CH_osa_168 | 4 | 28 | 0.00000145105 | GO:0006306 | DNA methylation |
| Oryza sativa ssp. japonica | 3 | 1 | CH_osa_43 | 8 | 40 | 0.0000000000000407581 | GO:0017148 | negative regulation of translation |
| Oryza sativa ssp. japonica | 3 | 1 | CH_osa_146 | 4 | 6 | 0.000000393007 | GO:0009734 | auxin mediated signaling pathway |
| Oryza sativa ssp. japonica | 3 | 1 | CH_osa_326 | 2 | 2 | 0.000518367 | GO:0048015 | phosphoinositide-mediated signaling |
| Oryza sativa ssp. japonica | 3 | 1 | CH_osa_130 | 9 | 20 | 0.000000080173 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Oryza sativa ssp. japonica | 3 | 3 | CH_osa_36 | 11 | 88 | 0.000000000000219285 | GO:0051246 | regulation of protein metabolic process |
| Oryza sativa ssp. japonica | 3 | 3 | CH_osa_74 | 12 | 33 | 0.000000792834 | GO:0045449 | regulation of cellular transcription |
| Oryza sativa ssp. japonica | 4 | 3 | CH_osa_115 | 10 | 30 | 0.000110408 | GO:0045449 | regulation of cellular transcription |
| Oryza sativa ssp. japonica | 7 | 1 | CH_osa_51 | 9 | 23 | 0.000000000000509095 | GO:0007242 | intracellular signaling cascade |
| Oryza sativa ssp. japonica | 7 | 3 | CH_osa_51 | 10 | 92 | 0.0000000103562 | GO:0007242 | intracellular signaling cascade |
| Oryza sativa ssp. japonica | 8 | 1 | CH_osa_268 | 4 | 29 | 0.000134917 | GO:0017148 | negative regulation of translation |
| Oryza sativa ssp. japonica | 9 | 1 | CH_osa_2 | 17 | 22 | 3.84098e-45 | GO:0009734 | auxin mediated signaling pathway |
| Oryza sativa ssp. japonica | 9 | 2 | CH_osa_23 | 9 | 56 | 0.000372851 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Oryza sativa ssp. japonica | 9 | 3 | CH_osa_2 | 17 | 22 | 3.84098e-45 | GO:0009734 | auxin mediated signaling pathway |
| Oryza sativa ssp. indica | Chr01 | 1 | CH_osaindica_214 | 4 | 39 | 0.000015663 | GO:0006306 | DNA methylation |
| Oryza sativa ssp. indica | Chr03 | 1 | CH_osaindica_198 | 9 | 29 | 0.0000115181 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Oryza sativa ssp. indica | Chr03 | 1 | CH_osaindica_212 | 3 | 3 | 0.0000151338 | GO:0009734 | auxin mediated signaling pathway |
| Oryza sativa ssp. indica | Chr03 | 1 | CH_osaindica_38 | 8 | 37 | 0.0000000000000330756 | GO:0017148 | negative regulation of translation |
| Oryza sativa ssp. indica | Chr03 | 3 | CH_osaindica_129 | 10 | 32 | 0.000800952 | GO:0045449 | regulation of cellular transcription |
| Oryza sativa ssp. indica | Chr03 | 3 | CH_osaindica_76 | 10 | 298 | 0.00000709414 | GO:0051246 | regulation of protein metabolic process |
| Oryza sativa ssp. indica | Chr04 | 1 | CH_osaindica_337 | 9 | 20 | 0.000520804 | GO:0050794 | regulation of cellular process |
| Oryza sativa ssp. indica | Chr05 | 1 | CH_osaindica_308 | 7 | 48 | 0.000320486 | GO:0007165 | signal transduction |
| Oryza sativa ssp. indica | Chr07 | 1 | CH_osaindica_146 | 5 | 7 | 0.000000294645 | GO:0007242 | intracellular signaling cascade |
| Oryza sativa ssp. indica | Chr08 | 1 | CH_osaindica_323 | 12 | 47 | 0.000375327 | GO:0045449 | regulation of cellular transcription |
| Oryza sativa ssp. indica | Chr08 | 1 | CH_osaindica_232 | 2 | 2 | 0.0000360341 | GO:0045980 | negative regulation of nucleotide metabolic process |
| Oryza sativa ssp. indica | Chr08 | 2 | CH_osaindica_5 | 2 | 2 | 0.0000394003 | GO:0045980 | negative regulation of nucleotide metabolic process |
| Oryza sativa ssp. indica | Chr08 | 3 | CH_osaindica_117 | 12 | 47 | 0.000375327 | GO:0045449 | regulation of cellular transcription |
| Oryza sativa ssp. indica | Chr09 | 1 | CH_osaindica_372 | 3 | 4 | 0.000977184 | GO:0007264 | small GTPase mediated signal transduction |
| Oryza sativa ssp. indica | Chr09 | 1 | CH_osaindica_2 | 14 | 19 | 1.30426e-37 | GO:0009734 | auxin mediated signaling pathway |
| Oryza sativa ssp. indica | Chr09 | 3 | CH_osaindica_3 | 14 | 19 | 1.30426e-37 | GO:0009734 | auxin mediated signaling pathway |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_293 | 6 | 7 | 0.000220359 | GO:0045449 | regulation of cellular transcription |
| Oryza sativa ssp. indica | Chr12 | 3 | CH_osaindica_124 | 25 | 212 | 0.000644422 | GO:0080090 | regulation of primary metabolic process |
| Populus trichocarpa | scaffold_1 | 1 | CH_ptr_326 | 2 | 2 | 0.00030336 | GO:0010371 | regulation of gibberellin biosynthetic process |
| Populus trichocarpa | scaffold_10 | 1 | CH_ptr_190 | 3 | 10 | 0.00000459944 | GO:0080050 | regulation of seed development |
| Populus trichocarpa | scaffold_11 | 1 | CH_ptr_189 | 3 | 3 | 0.0000043714 | GO:0002764 | immune response-regulating signaling pathway |
| Populus trichocarpa | scaffold_12 | 1 | CH_ptr_136 | 9 | 12 | 0.000000223764 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_12 | 3 | CH_ptr_83 | 10 | 13 | 0.000162521 | GO:0050794 | regulation of cellular process |
| Populus trichocarpa | scaffold_15 | 1 | CH_ptr_62 | 11 | 12 | 0.0000000000124588 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_15 | 3 | CH_ptr_37 | 11 | 12 | 0.0000000000124588 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_17 | 1 | CH_ptr_253 | 2 | 2 | 0.00005056 | GO:0048209 | regulation of vesicle targeting, to, from or within Golgi |
| Populus trichocarpa | scaffold_17 | 1 | CH_ptr_261 | 3 | 4 | 0.0000622398 | GO:0032313 | regulation of Rab GTPase activity |
| Populus trichocarpa | scaffold_3 | 1 | CH_ptr_296 | 2 | 2 | 0.00015168 | GO:0042306 | regulation of protein import into nucleus |
| Populus trichocarpa | scaffold_3 | 1 | CH_ptr_120 | 8 | 8 | 0.0000000356115 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_3 | 1 | CH_ptr_350 | 14 | 66 | 0.000538529 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_3 | 3 | CH_ptr_90 | 14 | 66 | 0.000538529 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_4 | 1 | CH_ptr_306 | 2 | 2 | 0.00015168 | GO:0048586 | regulation of long-day photoperiodism, flowering |
| Populus trichocarpa | scaffold_4 | 1 | CH_ptr_244 | 7 | 9 | 0.0000389755 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_5 | 1 | CH_ptr_26 | 5 | 5 | 4.90178e-17 | GO:0031540 | regulation of anthocyanin biosynthetic process |
| Populus trichocarpa | scaffold_5 | 3 | CH_ptr_91 | 23 | 94 | 0.000638195 | GO:0080090 | regulation of primary metabolic process |
| Populus trichocarpa | scaffold_6 | 1 | CH_ptr_292 | 2 | 3 | 0.000151676 | GO:0009649 | entrainment of circadian clock |
| Populus trichocarpa | scaffold_7 | 1 | CH_ptr_241 | 6 | 6 | 0.0000367322 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Populus trichocarpa | scaffold_7 | 1 | CH_ptr_252 | 2 | 2 | 0.00005056 | GO:0010670 | positive regulation of oxygen and reactive oxygen species metabolic process |
| Populus trichocarpa | scaffold_8 | 1 | CH_ptr_219 | 3 | 4 | 0.0000174795 | GO:0002764 | immune response-regulating signaling pathway |
| Ricinus communis | 29813 | 1 | CH_rco_142 | 2 | 2 | 0.0000981981 | GO:0080050 | regulation of seed development |
| Ricinus communis | 30174 | 1 | CH_rco_171 | 5 | 5 | 0.000314473 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Ricinus communis | 30190 | 1 | CH_rco_139 | 2 | 2 | 0.0000981981 | GO:0042306 | regulation of protein import into nucleus |
| Sorghum bicolor | chr_1 | 1 | CH_sbi_29 | 13 | 14 | 0.00000000000000267014 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Sorghum bicolor | chr_1 | 1 | CH_sbi_225 | 3 | 4 | 0.000232752 | GO:0009734 | auxin mediated signaling pathway |
| Sorghum bicolor | chr_1 | 3 | CH_sbi_16 | 13 | 14 | 0.00000000000000267014 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Sorghum bicolor | chr_2 | 1 | CH_sbi_2 | 14 | 16 | 5.87808e-36 | GO:0009734 | auxin mediated signaling pathway |
| Sorghum bicolor | chr_2 | 3 | CH_sbi_2 | 14 | 16 | 5.87808e-36 | GO:0009734 | auxin mediated signaling pathway |
| Sorghum bicolor | chr_2 | 4 | CH_sbi_1 | 10 | 38 | 0.000341374 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Sorghum bicolor | chr_6 | 1 | CH_sbi_212 | 2 | 3 | 0.000174459 | GO:0045926 | negative regulation of growth |
| Sorghum bicolor | chr_7 | 1 | CH_sbi_43 | 12 | 17 | 0.0000000000386536 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Sorghum bicolor | chr_7 | 3 | CH_sbi_25 | 12 | 17 | 0.0000000000386536 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Sorghum bicolor | chr_8 | 1 | CH_sbi_157 | 8 | 12 | 0.00000547416 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Sorghum bicolor | chr_8 | 3 | CH_sbi_53 | 10 | 14 | 0.00000960792 | GO:0050794 | regulation of cellular process |
| Sorghum bicolor | scaffold_13 | 1 | CH_sbi_138 | 3 | 5 | 0.00000177518 | GO:0045941 | positive regulation of cellular transcription |
| Selaginella moellendorffii | scaffold_111 | 1 | CH_smo_109 | 5 | 5 | 0.000810074 | GO:0045449 | regulation of cellular transcription |
| Selaginella moellendorffii | scaffold_39 | 1 | CH_smo_95 | 7 | 16 | 0.000398589 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Selaginella moellendorffii | scaffold_43 | 1 | CH_smo_72 | 5 | 28 | 0.00011392 | GO:0007264 | small GTPase mediated signal transduction |
| Selaginella moellendorffii | scaffold_51 | 1 | CH_smo_2 | 7 | 7 | 5.97371e-19 | GO:0045926 | negative regulation of growth |
| Selaginella moellendorffii | scaffold_55 | 1 | CH_smo_4 | 6 | 6 | 0.00000000000000127927 | GO:0045926 | negative regulation of growth |
| Selaginella moellendorffii | scaffold_75 | 1 | CH_smo_97 | 3 | 5 | 0.000427637 | GO:0006306 | DNA methylation |
| Theobroma cacao | Tc00 | 1 | CH_tca_88 | 10 | 19 | 0.00000000424758 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Theobroma cacao | Tc00 | 1 | CH_tca_230 | 9 | 31 | 0.0000482076 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Theobroma cacao | Tc00 | 1 | CH_tca_167 | 6 | 10 | 0.00000140266 | GO:0007242 | intracellular signaling cascade |
| Theobroma cacao | Tc00 | 3 | CH_tca_79 | 10 | 19 | 0.00000000424758 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Theobroma cacao | Tc01 | 1 | CH_tca_241 | 17 | 79 | 0.000068824 | GO:0019222 | regulation of metabolic process |
| Theobroma cacao | Tc01 | 1 | CH_tca_260 | 16 | 57 | 0.000109952 | GO:0050794 | regulation of cellular process |
| Theobroma cacao | Tc01 | 1 | CH_tca_121 | 7 | 8 | 0.000000101475 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Theobroma cacao | Tc01 | 1 | CH_tca_284 | 3 | 11 | 0.000210051 | GO:0031348 | negative regulation of defense response |
| Theobroma cacao | Tc02 | 1 | CH_tca_42 | 12 | 20 | 0.00000000000148755 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Theobroma cacao | Tc02 | 1 | CH_tca_187 | 15 | 56 | 0.00000857409 | GO:0010468 | regulation of gene expression |
| Theobroma cacao | Tc02 | 2 | CH_tca_22 | 15 | 83 | 0.000214567 | GO:0019222 | regulation of metabolic process |
| Theobroma cacao | Tc02 | 3 | CH_tca_34 | 12 | 20 | 0.00000000000148755 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Theobroma cacao | Tc03 | 1 | CH_tca_342 | 2 | 2 | 0.000907735 | GO:0019722 | calcium-mediated signaling |
| Theobroma cacao | Tc03 | 1 | CH_tca_249 | 6 | 17 | 0.0000791495 | GO:0007242 | intracellular signaling cascade |
| Theobroma cacao | Tc05 | 1 | CH_tca_89 | 8 | 16 | 0.0000000043248 | GO:0007242 | intracellular signaling cascade |
| Theobroma cacao | Tc05 | 3 | CH_tca_148 | 12 | 157 | 0.000107014 | GO:0007242 | intracellular signaling cascade |
| Theobroma cacao | Tc06 | 1 | CH_tca_74 | 12 | 42 | 0.00000000112198 | GO:0007165 | signal transduction |
| Theobroma cacao | Tc06 | 3 | CH_tca_70 | 12 | 42 | 0.00000000112198 | GO:0007165 | signal transduction |
| Theobroma cacao | Tc07 | 1 | CH_tca_213 | 3 | 7 | 0.0000280347 | GO:0042752 | regulation of circadian rhythm |
| Theobroma cacao | Tc08 | 2 | CH_tca_20 | 11 | 39 | 0.0000626039 | GO:0080090 | regulation of primary metabolic process |
| Theobroma cacao | Tc10 | 1 | CH_tca_91 | 20 | 55 | 0.00000000467062 | GO:0050794 | regulation of cellular process |
| Theobroma cacao | Tc10 | 1 | CH_tca_12 | 9 | 45 | 1.74251e-19 | GO:0002764 | immune response-regulating signaling pathway |
| Volvox carteri | scaffold_8 | 1 | CH_vca_29 | 2 | 4 | 0.000839396 | GO:0006275 | regulation of DNA replication |
| Vitis vinifera | chr1 | 1 | CH_vvi_86 | 4 | 5 | 0.0000000000319093 | GO:0080050 | regulation of seed development |
| Vitis vinifera | chr1 | 2 | CH_vvi_118 | 12 | 34 | 0.00086461 | GO:0080090 | regulation of primary metabolic process |
| Vitis vinifera | chr1 | 4 | CH_vvi_51 | 12 | 34 | 0.00086461 | GO:0080090 | regulation of primary metabolic process |
| Vitis vinifera | chr12 | 1 | CH_vvi_92 | 5 | 10 | 0.0000000000478457 | GO:0051090 | regulation of transcription factor activity |
| Vitis vinifera | chr12 | 1 | CH_vvi_254 | 3 | 5 | 0.0000186567 | GO:0051090 | regulation of transcription factor activity |
| Vitis vinifera | chr12 | 1 | CH_vvi_280 | 4 | 14 | 0.0000518111 | GO:0006306 | DNA methylation |
| Vitis vinifera | chr12 | 2 | CH_vvi_65 | 3 | 10 | 0.0000173288 | GO:0051090 | regulation of transcription factor activity |
| Vitis vinifera | chr14 | 1 | CH_vvi_126 | 3 | 3 | 0.00000000848527 | GO:0031540 | regulation of anthocyanin biosynthetic process |
| Vitis vinifera | chr16 | 1 | CH_vvi_103 | 11 | 16 | 0.00000000016068 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Vitis vinifera | chr16 | 3 | CH_vvi_73 | 11 | 16 | 0.00000000016068 | GO:0006355 | regulation of cellular transcription, DNA-dependent |
| Vitis vinifera | chr17 | 1 | CH_vvi_174 | 4 | 18 | 0.000000272814 | GO:0010310 | regulation of hydrogen peroxide metabolic process |
| Vitis vinifera | chr17 | 1 | CH_vvi_379 | 20 | 70 | 0.000556504 | GO:0080090 | regulation of primary metabolic process |
| Vitis vinifera | chr17 | 3 | CH_vvi_157 | 20 | 70 | 0.000556504 | GO:0080090 | regulation of primary metabolic process |
| Vitis vinifera | chr2 | 1 | CH_vvi_204 | 9 | 10 | 0.0000042005 | GO:0045449 | regulation of cellular transcription |
| Vitis vinifera | chr2 | 3 | CH_vvi_140 | 10 | 16 | 0.000158307 | GO:0045449 | regulation of cellular transcription |
| Vitis vinifera | chr3 | 1 | CH_vvi_26 | 8 | 9 | 6.03016e-20 | GO:0006808 | regulation of nitrogen utilization |
| Vitis vinifera | chr3 | 2 | CH_vvi_8 | 7 | 8 | 1.59187e-17 | GO:0006808 | regulation of nitrogen utilization |
| Vitis vinifera | chr3 | 3 | CH_vvi_138 | 11 | 18 | 0.000134615 | GO:0019222 | regulation of metabolic process |
| Vitis vinifera | chr3 | 4 | CH_vvi_38 | 10 | 18 | 0.0000835896 | GO:0019222 | regulation of metabolic process |
| Vitis vinifera | chr6 | 1 | CH_vvi_179 | 3 | 3 | 0.000000475175 | GO:0006275 | regulation of DNA replication |
| Vitis vinifera | chr6 | 2 | CH_vvi_41 | 3 | 3 | 0.000000103231 | GO:0006275 | regulation of DNA replication |
| Vitis vinifera | chr7 | 1 | CH_vvi_142 | 3 | 4 | 0.0000000339398 | GO:0006792 | regulation of sulfur utilization |
| Zea mays | 1 | 1 | CH_zma_62 | 11 | 17 | 0.00000081053 | GO:0045449 | regulation of cellular transcription |
| Zea mays | 1 | 1 | CH_zma_125 | 3 | 4 | 0.000129043 | GO:0009734 | auxin mediated signaling pathway |
| Zea mays | 1 | 3 | CH_zma_18 | 11 | 17 | 0.00000081053 | GO:0045449 | regulation of cellular transcription |
| Zea mays | 2 | 1 | CH_zma_106 | 2 | 2 | 0.0000505089 | GO:0045926 | negative regulation of growth |
| Zea mays | 2 | 1 | CH_zma_3 | 9 | 11 | 5.3797e-22 | GO:0009734 | auxin mediated signaling pathway |
| Zea mays | 5 | 1 | CH_zma_22 | 5 | 7 | 0.0000000000158842 | GO:0008064 | regulation of actin polymerization or depolymerization |
| Zea mays | 7 | 1 | CH_zma_43 | 4 | 4 | 0.0000000285366 | GO:0009734 | auxin mediated signaling pathway |
| Zea mays | 9 | 1 | CH_zma_173 | 2 | 4 | 0.000909083 | GO:0006446 | regulation of translational initiation |
Functional clusters experiments
| Experiment | Type | Description | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | X |
| 2 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | V |
| 3 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | X |
| 4 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | V |