Functional clusters 
Information
- Type
- GO term
- Identifier
- GO:0032502
- Description
- developmental process
Cluster overview
Exact GO match
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 4 | CH_aly_3 | 27 | 130 | 0.0000347474 |
| Arabidopsis thaliana | 2 | 2 | CH_ath_21 | 21 | 84 | 0.000139844 |
| Arabidopsis thaliana | 2 | 3 | CH_ath_69 | 26 | 91 | 0.0000434642 |
| Arabidopsis thaliana | 2 | 4 | CH_ath_11 | 29 | 136 | 0.00001754 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_161 | 3 | 4 | 0.000745834 |
| Fragaria vesca | scf0513158 | 1 | CH_fve_234 | 13 | 58 | 0.000274653 |
| Fragaria vesca | scf0513158 | 3 | CH_fve_58 | 13 | 58 | 0.000274653 |
| Lotus japonicus | chr3 | 3 | CH_lja_24 | 13 | 86 | 0.000104443 |
| Medicago truncatula | 3 | 1 | CH_mtr_395 | 7 | 19 | 0.000601435 |
| Theobroma cacao | Tc02 | 1 | CH_tca_248 | 12 | 54 | 0.0000782894 |
Child GO matches
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value | GO | Description |
|---|---|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_99 | 4 | 5 | 0.000000174961 | GO:0048527 | lateral root development |
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_42 | 10 | 38 | 0.0000000000119386 | GO:0009555 | pollen development |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_136 | 7 | 24 | 0.00000360053 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_185 | 4 | 4 | 0.0000488454 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_104 | 5 | 5 | 0.000000302257 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_26 | 15 | 75 | 0.0000000000000188452 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_103 | 10 | 64 | 0.000000285879 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_186 | 4 | 4 | 0.0000488454 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_10 | 23 | 287 | 0.0000000000000323325 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_15 | 20 | 254 | 0.00000000000791956 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_4 | 35 | 258 | 9.79911e-32 | GO:0009561 | megagametogenesis |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_11 | 7 | 49 | 0.000832324 | GO:0007275 | multicellular organismal development |
| Arabidopsis lyrata | scaffold_4 | 3 | CH_aly_62 | 10 | 165 | 0.000962216 | GO:0048229 | gametophyte development |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_135 | 4 | 4 | 0.00000347217 | GO:0009860 | pollen tube growth |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_108 | 4 | 8 | 0.000000385912 | GO:0010584 | pollen exine formation |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_45 | 10 | 159 | 0.000110965 | GO:0000904 | cell morphogenesis involved in differentiation |
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_216 | 3 | 3 | 0.000165756 | GO:0009845 | seed germination |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_156 | 4 | 4 | 0.00000831348 | GO:0009555 | pollen development |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_146 | 3 | 4 | 0.00000526082 | GO:0010162 | seed dormancy |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_31 | 9 | 10 | 0.000000000000106952 | GO:0007275 | multicellular organismal development |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_183 | 8 | 20 | 0.0000458479 | GO:0009790 | embryonic development |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_50 | 8 | 11 | 0.00000000019864 | GO:0007275 | multicellular organismal development |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_7 | 5 | 13 | 0.000294623 | GO:0007275 | multicellular organismal development |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_13 | 10 | 16 | 0.00000000000071728 | GO:0007275 | multicellular organismal development |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_226 | 2 | 2 | 0.000189412 | GO:0045604 | regulation of epidermal cell differentiation |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_283 | 2 | 2 | 0.000631373 | GO:0048439 | flower morphogenesis |
| Arabidopsis thaliana | 1 | 1 | CH_ath_286 | 2 | 2 | 0.000357122 | GO:0010072 | primary shoot apical meristem specification |
| Arabidopsis thaliana | 1 | 1 | CH_ath_61 | 7 | 11 | 0.000000000127334 | GO:0009555 | pollen development |
| Arabidopsis thaliana | 1 | 1 | CH_ath_86 | 5 | 8 | 0.00000000345977 | GO:0048527 | lateral root development |
| Arabidopsis thaliana | 1 | 3 | CH_ath_57 | 15 | 182 | 0.00000974049 | GO:0007275 | multicellular organismal development |
| Arabidopsis thaliana | 2 | 1 | CH_ath_123 | 3 | 3 | 0.000000185995 | GO:0080050 | regulation of seed development |
| Arabidopsis thaliana | 2 | 1 | CH_ath_197 | 7 | 46 | 0.0000184241 | GO:0009555 | pollen development |
| Arabidopsis thaliana | 2 | 3 | CH_ath_43 | 10 | 115 | 0.00000101026 | GO:0009555 | pollen development |
| Arabidopsis thaliana | 3 | 1 | CH_ath_119 | 4 | 7 | 0.000000161748 | GO:0010584 | pollen exine formation |
| Arabidopsis thaliana | 4 | 1 | CH_ath_161 | 3 | 4 | 0.00000467537 | GO:0010162 | seed dormancy |
| Arabidopsis thaliana | 4 | 1 | CH_ath_178 | 14 | 71 | 0.0000104787 | GO:0009793 | embryonic development ending in seed dormancy |
| Arabidopsis thaliana | 4 | 1 | CH_ath_56 | 10 | 12 | 0.0000000000426587 | GO:0009793 | embryonic development ending in seed dormancy |
| Arabidopsis thaliana | 4 | 1 | CH_ath_169 | 4 | 4 | 0.00000741238 | GO:0009555 | pollen development |
| Arabidopsis thaliana | 4 | 3 | CH_ath_22 | 10 | 12 | 0.0000000000426587 | GO:0009793 | embryonic development ending in seed dormancy |
| Arabidopsis thaliana | 4 | 3 | CH_ath_48 | 16 | 87 | 0.00000172213 | GO:0009793 | embryonic development ending in seed dormancy |
| Arabidopsis thaliana | 5 | 1 | CH_ath_260 | 2 | 2 | 0.000178561 | GO:0045604 | regulation of epidermal cell differentiation |
| Arabidopsis thaliana | 5 | 1 | CH_ath_285 | 2 | 2 | 0.000357122 | GO:0048439 | flower morphogenesis |
| Arabidopsis thaliana | 5 | 1 | CH_ath_268 | 3 | 3 | 0.000200981 | GO:0009845 | seed germination |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_130 | 3 | 5 | 0.000194072 | GO:0007275 | multicellular organismal development |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_34 | 5 | 10 | 0.00000000317582 | GO:0007275 | multicellular organismal development |
| Brachypodium distachyon | Bd3 | 1 | CH_bdi_114 | 2 | 2 | 0.0000750497 | GO:0048657 | tapetal cell differentiation |
| Carica papaya | supercontig_10 | 1 | CH_cpa_49 | 5 | 13 | 0.000000919413 | GO:0009555 | pollen development |
| Carica papaya | supercontig_103 | 1 | CH_cpa_76 | 3 | 3 | 0.0000367595 | GO:0007568 | aging |
| Carica papaya | supercontig_12 | 1 | CH_cpa_35 | 4 | 6 | 0.0000000135811 | GO:0009561 | megagametogenesis |
| Carica papaya | supercontig_183 | 1 | CH_cpa_117 | 2 | 2 | 0.000291248 | GO:0009955 | adaxial/abaxial pattern formation |
| Carica papaya | supercontig_27 | 1 | CH_cpa_44 | 3 | 7 | 0.000000494743 | GO:0009960 | endosperm development |
| Carica papaya | supercontig_7 | 1 | CH_cpa_41 | 3 | 3 | 0.000000141383 | GO:0010022 | meristem determinacy |
| Fragaria vesca | LG2 | 1 | CH_fve_16 | 6 | 6 | 0.0000000000000664987 | GO:0009845 | seed germination |
| Fragaria vesca | LG2 | 1 | CH_fve_184 | 2 | 2 | 0.0000598784 | GO:0048658 | tapetal layer development |
| Fragaria vesca | LG4 | 1 | CH_fve_292 | 2 | 2 | 0.000898177 | GO:0010016 | shoot morphogenesis |
| Fragaria vesca | scf0513158 | 1 | CH_fve_77 | 3 | 4 | 0.0000000860483 | GO:0080050 | regulation of seed development |
| Glycine max | Gm01 | 1 | CH_gma_271 | 3 | 3 | 0.000257128 | GO:0009860 | pollen tube growth |
| Glycine max | Gm02 | 1 | CH_gma_248 | 2 | 2 | 0.000129578 | GO:0048446 | petal morphogenesis |
| Glycine max | Gm04 | 1 | CH_gma_285 | 2 | 2 | 0.000259157 | GO:0010623 | developmental programmed cell death |
| Glycine max | Gm06 | 1 | CH_gma_160 | 3 | 4 | 0.00000134309 | GO:0009955 | adaxial/abaxial pattern formation |
| Glycine max | Gm06 | 1 | CH_gma_286 | 2 | 2 | 0.000259157 | GO:0010623 | developmental programmed cell death |
| Glycine max | Gm10 | 1 | CH_gma_247 | 2 | 2 | 0.000129578 | GO:0010054 | trichoblast differentiation |
| Glycine max | Gm12 | 1 | CH_gma_311 | 2 | 2 | 0.000431928 | GO:0010260 | organ senescence |
| Glycine max | Gm14 | 1 | CH_gma_22 | 7 | 8 | 6.30213e-16 | GO:0048527 | lateral root development |
| Glycine max | Gm16 | 1 | CH_gma_270 | 3 | 3 | 0.000257128 | GO:0009860 | pollen tube growth |
| Glycine max | Gm20 | 1 | CH_gma_39 | 4 | 4 | 0.0000000000012088 | GO:0080050 | regulation of seed development |
| Lotus japonicus | chr0 | 1 | CH_lja_169 | 2 | 2 | 0.000685848 | GO:0048653 | anther development |
| Lotus japonicus | chr0 | 1 | CH_lja_59 | 5 | 29 | 0.00000190531 | GO:0048580 | regulation of post-embryonic development |
| Lotus japonicus | chr2 | 1 | CH_lja_26 | 4 | 5 | 0.00000000484305 | GO:0007568 | aging |
| Lotus japonicus | chr3 | 2 | CH_lja_33 | 3 | 3 | 0.000581907 | GO:0009653 | anatomical structure morphogenesis |
| Lotus japonicus | chr5 | 1 | CH_lja_124 | 2 | 3 | 0.000205747 | GO:0010073 | meristem maintenance |
| Lotus japonicus | chr5 | 1 | CH_lja_77 | 3 | 15 | 0.0000128328 | GO:0009835 | ripening |
| Malus domestica | 3 | 1 | CH_mdo_174 | 2 | 2 | 0.000276951 | GO:0010054 | trichoblast differentiation |
| Malus domestica | 5 | 1 | CH_mdo_124 | 4 | 4 | 0.0000499715 | GO:0009790 | embryonic development |
| Manihot esculenta | scaffold04890 | 1 | CH_mes_62 | 4 | 7 | 0.00000245304 | GO:0007568 | aging |
| Medicago truncatula | 1 | 1 | CH_mtr_105 | 4 | 20 | 0.000000000623738 | GO:0010054 | trichoblast differentiation |
| Medicago truncatula | 1 | 1 | CH_mtr_272 | 3 | 4 | 0.0000439981 | GO:0009845 | seed germination |
| Medicago truncatula | 3 | 1 | CH_mtr_228 | 3 | 21 | 0.00000977776 | GO:0048439 | flower morphogenesis |
| Medicago truncatula | 5 | 1 | CH_mtr_69 | 10 | 68 | 0.00000000000575899 | GO:0007275 | multicellular organismal development |
| Medicago truncatula | 5 | 3 | CH_mtr_44 | 10 | 68 | 0.00000000000575899 | GO:0007275 | multicellular organismal development |
| Medicago truncatula | 6 | 1 | CH_mtr_78 | 7 | 33 | 0.0000000000196891 | GO:0009860 | pollen tube growth |
| Medicago truncatula | AC235748.8 | 1 | CH_mtr_271 | 3 | 5 | 0.0000422697 | GO:0010051 | xylem and phloem pattern formation |
| Ostreococcus lucimarinus | Chr_1 | 1 | CH_olu_15 | 2 | 2 | 0.000256246 | GO:0007275 | multicellular organismal development |
| Ostreococcus lucimarinus | Chr_1 | 2 | CH_olu_1 | 2 | 2 | 0.000266987 | GO:0007275 | multicellular organismal development |
| Oryza sativa ssp. japonica | 1 | 1 | CH_osa_12 | 10 | 30 | 1.25642e-22 | GO:0007275 | multicellular organismal development |
| Oryza sativa ssp. japonica | 5 | 1 | CH_osa_106 | 4 | 5 | 0.0000000108614 | GO:0007275 | multicellular organismal development |
| Oryza sativa ssp. indica | Chr01 | 1 | CH_osaindica_8 | 11 | 31 | 6.61624e-25 | GO:0007275 | multicellular organismal development |
| Oryza sativa ssp. indica | Chr01 | 3 | CH_osaindica_9 | 11 | 31 | 6.61624e-25 | GO:0007275 | multicellular organismal development |
| Oryza sativa ssp. indica | Chr05 | 1 | CH_osaindica_117 | 4 | 5 | 0.0000000192271 | GO:0007275 | multicellular organismal development |
| Physcomitrella patens | scaffold_63 | 1 | CH_ppa_41 | 2 | 3 | 0.000534241 | GO:0007530 | sex determination |
| Populus trichocarpa | scaffold_1 | 1 | CH_ptr_370 | 2 | 2 | 0.000758399 | GO:0009955 | adaxial/abaxial pattern formation |
| Populus trichocarpa | scaffold_10 | 1 | CH_ptr_190 | 3 | 10 | 0.00000459944 | GO:0080050 | regulation of seed development |
| Populus trichocarpa | scaffold_10 | 1 | CH_ptr_353 | 5 | 8 | 0.000571293 | GO:0048856 | anatomical structure development |
| Populus trichocarpa | scaffold_14 | 1 | CH_ptr_316 | 3 | 4 | 0.000189141 | GO:0010051 | xylem and phloem pattern formation |
| Populus trichocarpa | scaffold_14 | 1 | CH_ptr_183 | 3 | 3 | 0.00000371569 | GO:0048767 | root hair elongation |
| Populus trichocarpa | scaffold_15 | 1 | CH_ptr_379 | 2 | 3 | 0.000910025 | GO:0045165 | cell fate commitment |
| Populus trichocarpa | scaffold_16 | 1 | CH_ptr_13 | 11 | 44 | 1.43959e-22 | GO:0009561 | megagametogenesis |
| Populus trichocarpa | scaffold_16 | 3 | CH_ptr_12 | 11 | 44 | 1.43959e-22 | GO:0009561 | megagametogenesis |
| Populus trichocarpa | scaffold_2 | 1 | CH_ptr_304 | 2 | 2 | 0.00015168 | GO:0009835 | ripening |
| Populus trichocarpa | scaffold_2 | 1 | CH_ptr_364 | 2 | 2 | 0.000758399 | GO:0010054 | trichoblast differentiation |
| Populus trichocarpa | scaffold_2 | 1 | CH_ptr_209 | 3 | 3 | 0.0000112161 | GO:0048527 | lateral root development |
| Populus trichocarpa | scaffold_4 | 1 | CH_ptr_349 | 2 | 2 | 0.0005056 | GO:0080006 | internode patterning |
| Populus trichocarpa | scaffold_4 | 1 | CH_ptr_306 | 2 | 2 | 0.00015168 | GO:0048586 | regulation of long-day photoperiodism, flowering |
| Populus trichocarpa | scaffold_4 | 2 | CH_ptr_7 | 2 | 2 | 0.000168322 | GO:0080006 | internode patterning |
| Populus trichocarpa | scaffold_8 | 1 | CH_ptr_201 | 7 | 15 | 0.00000906117 | GO:0048856 | anatomical structure development |
| Populus trichocarpa | scaffold_9 | 1 | CH_ptr_348 | 2 | 2 | 0.0005056 | GO:0080006 | internode patterning |
| Ricinus communis | 29813 | 1 | CH_rco_142 | 2 | 2 | 0.0000981981 | GO:0080050 | regulation of seed development |
| Ricinus communis | 29869 | 1 | CH_rco_73 | 3 | 6 | 0.000000289257 | GO:0048658 | tapetal layer development |
| Ricinus communis | 29986 | 1 | CH_rco_59 | 3 | 3 | 0.00000005786 | GO:0010054 | trichoblast differentiation |
| Ricinus communis | 30005 | 1 | CH_rco_131 | 3 | 3 | 0.000078921 | GO:0009845 | seed germination |
| Ricinus communis | 30076 | 1 | CH_rco_45 | 4 | 4 | 0.00000000203142 | GO:0048767 | root hair elongation |
| Ricinus communis | 30147 | 1 | CH_rco_60 | 4 | 4 | 0.0000000674801 | GO:0009860 | pollen tube growth |
| Sorghum bicolor | chr_3 | 1 | CH_sbi_1 | 21 | 37 | 8.47562e-49 | GO:0007275 | multicellular organismal development |
| Sorghum bicolor | chr_3 | 3 | CH_sbi_1 | 21 | 37 | 8.47562e-49 | GO:0007275 | multicellular organismal development |
| Sorghum bicolor | chr_9 | 1 | CH_sbi_42 | 6 | 10 | 0.0000000000293267 | GO:0007275 | multicellular organismal development |
| Selaginella moellendorffii | scaffold_39 | 1 | CH_smo_62 | 3 | 5 | 0.0000594482 | GO:0030582 | fruiting body development |
| Theobroma cacao | Tc00 | 1 | CH_tca_330 | 3 | 12 | 0.000701045 | GO:0048527 | lateral root development |
| Theobroma cacao | Tc00 | 1 | CH_tca_311 | 2 | 2 | 0.000432255 | GO:0010054 | trichoblast differentiation |
| Theobroma cacao | Tc02 | 1 | CH_tca_180 | 3 | 6 | 0.0000047069 | GO:0048440 | carpel development |
| Theobroma cacao | Tc10 | 1 | CH_tca_18 | 7 | 10 | 4.13957e-16 | GO:0009561 | megagametogenesis |
| Theobroma cacao | Tc10 | 1 | CH_tca_243 | 3 | 4 | 0.0000733357 | GO:0009561 | megagametogenesis |
| Vitis vinifera | chr1 | 1 | CH_vvi_168 | 4 | 6 | 0.000000169339 | GO:0048316 | seed development |
| Vitis vinifera | chr1 | 1 | CH_vvi_86 | 4 | 5 | 0.0000000000319093 | GO:0080050 | regulation of seed development |
| Vitis vinifera | chr1 | 1 | CH_vvi_247 | 4 | 9 | 0.0000131568 | GO:0009860 | pollen tube growth |
| Vitis vinifera | chr10 | 3 | CH_vvi_103 | 10 | 177 | 0.00000630193 | GO:0048364 | root development |
| Vitis vinifera | chr12 | 1 | CH_vvi_162 | 5 | 16 | 0.000000123434 | GO:0007568 | aging |
| Vitis vinifera | chr13 | 1 | CH_vvi_292 | 2 | 2 | 0.0000752106 | GO:0009830 | cell wall modification during abscission |
| Vitis vinifera | chr15 | 1 | CH_vvi_250 | 4 | 4 | 0.000014053 | GO:0007275 | multicellular organismal development |
| Vitis vinifera | chr16 | 1 | CH_vvi_296 | 2 | 2 | 0.0000752106 | GO:0048730 | epidermis morphogenesis |
| Vitis vinifera | chr16 | 1 | CH_vvi_158 | 4 | 4 | 0.00000010499 | GO:0009860 | pollen tube growth |
| Vitis vinifera | chr18 | 1 | CH_vvi_297 | 2 | 2 | 0.0000752106 | GO:0007569 | cell aging |
| Vitis vinifera | chr7 | 1 | CH_vvi_127 | 3 | 3 | 0.00000000848527 | GO:0010054 | trichoblast differentiation |
Functional clusters experiments
| Experiment | Type | Description | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | X |
| 2 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | V |
| 3 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | X |
| 4 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | V |