Functional clusters 
Information
- Type
- GO term
- Identifier
- GO:0016021
- Description
- integral to membrane
Cluster overview
Exact GO match
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | 1 | 1 | CH_ath_271 | 10 | 35 | 0.000234664 |
| Arabidopsis thaliana | 1 | 3 | CH_ath_81 | 10 | 35 | 0.000234664 |
| Arabidopsis thaliana | 5 | 3 | CH_ath_61 | 10 | 27 | 0.0000128543 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_8 | 5 | 6 | 0.000985241 |
| Lotus japonicus | chr6 | 1 | CH_lja_134 | 11 | 70 | 0.000304202 |
| Lotus japonicus | chr6 | 3 | CH_lja_23 | 14 | 115 | 0.0000941414 |
| Manihot esculenta | scaffold01701 | 1 | CH_mes_151 | 5 | 5 | 0.000575197 |
| Manihot esculenta | scaffold08799 | 1 | CH_mes_150 | 5 | 5 | 0.000575197 |
| Manihot esculenta | scaffold10173 | 1 | CH_mes_149 | 5 | 5 | 0.000575197 |
| Medicago truncatula | 3 | 1 | CH_mtr_421 | 5 | 8 | 0.000993077 |
| Medicago truncatula | 5 | 1 | CH_mtr_142 | 12 | 47 | 0.0000000307443 |
| Medicago truncatula | 5 | 3 | CH_mtr_74 | 12 | 47 | 0.0000000307443 |
| Theobroma cacao | Tc05 | 1 | CH_tca_118 | 7 | 8 | 0.000000083885 |
| Vitis vinifera | chr14 | 1 | CH_vvi_272 | 8 | 11 | 0.000041464 |
| Vitis vinifera | chr14 | 1 | CH_vvi_47 | 28 | 70 | 4.05737e-16 |
| Vitis vinifera | chr14 | 3 | CH_vvi_151 | 10 | 23 | 0.000347036 |
| Vitis vinifera | chr14 | 3 | CH_vvi_43 | 28 | 70 | 4.05737e-16 |
Child GO matches
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value | GO | Description |
|---|---|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_92 | 3 | 3 | 0.000000119593 | GO:0008305 | integrin complex |
| Arabidopsis thaliana | 3 | 1 | CH_ath_166 | 3 | 6 | 0.00000594933 | GO:0008305 | integrin complex |
| Arabidopsis thaliana | 5 | 1 | CH_ath_129 | 3 | 3 | 0.000000297592 | GO:0008305 | integrin complex |
| Fragaria vesca | LG3 | 1 | CH_fve_136 | 4 | 36 | 0.00000792371 | GO:0008076 | voltage-gated potassium channel complex |
| Malus domestica | 3 | 1 | CH_mdo_15 | 4 | 7 | 0.000000000154877 | GO:0008076 | voltage-gated potassium channel complex |
| Physcomitrella patens | scaffold_12 | 1 | CH_ppa_14 | 3 | 5 | 0.00000634098 | GO:0008076 | voltage-gated potassium channel complex |
| Populus trichocarpa | scaffold_7 | 1 | CH_ptr_344 | 2 | 2 | 0.0005056 | GO:0008305 | integrin complex |
| Ricinus communis | 29646 | 1 | CH_rco_199 | 2 | 3 | 0.00088371 | GO:0008305 | integrin complex |
Functional clusters experiments
| Experiment | Type | Description | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | X |
| 2 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | V |
| 3 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | X |
| 4 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | V |