Functional clusters 
Information
- Type
- GO term
- Identifier
- GO:0003723
- Description
- RNA binding
Cluster overview
Exact GO match
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Malus domestica | 4 | 1 | CH_mdo_220 | 5 | 9 | 0.000851046 |
| Malus domestica | 9 | 1 | CH_mdo_200 | 4 | 4 | 0.000639121 |
| Medicago truncatula | 5 | 1 | CH_mtr_349 | 6 | 17 | 0.000277627 |
| Selaginella moellendorffii | scaffold_17 | 1 | CH_smo_64 | 7 | 19 | 0.000080024 |
| Theobroma cacao | Tc10 | 1 | CH_tca_43 | 13 | 42 | 0.0000000000020624 |
| Theobroma cacao | Tc10 | 3 | CH_tca_36 | 13 | 42 | 0.0000000000020624 |
| Vitis vinifera | chr19 | 3 | CH_vvi_113 | 19 | 146 | 0.0000156612 |
Child GO matches
Click table-header(s) to enable sorting
| Species | Chromosome | Experiment | Cluster_id | Cluster size | Number of genes | E-value | GO | Description |
|---|---|---|---|---|---|---|---|---|
| Arabidopsis thaliana | 1 | 1 | CH_ath_1 | 30 | 30 | 3.88787e-47 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 1 | CH_ath_110 | 7 | 7 | 0.000000049184 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 1 | CH_ath_3 | 26 | 28 | 9.44342e-38 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 2 | CH_ath_2 | 26 | 28 | 5.27892e-37 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 2 | CH_ath_8 | 7 | 7 | 0.0000000743772 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 2 | CH_ath_1 | 30 | 30 | 2.87186e-46 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 3 | CH_ath_1 | 81 | 81 | 4.42908e-135 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 3 | CH_ath_3 | 26 | 28 | 9.44342e-38 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 4 | CH_ath_1 | 81 | 81 | 1.10644e-132 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 1 | 4 | CH_ath_2 | 26 | 28 | 5.27892e-37 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 1 | CH_ath_52 | 9 | 9 | 0.0000000000201799 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 1 | CH_ath_222 | 11 | 46 | 0.0000571891 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 1 | CH_ath_272 | 3 | 8 | 0.000242393 | GO:0003729 | mRNA binding |
| Arabidopsis thaliana | 2 | 1 | CH_ath_164 | 7 | 10 | 0.00000559315 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 2 | CH_ath_13 | 7 | 10 | 0.00000842539 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 2 | CH_ath_16 | 11 | 46 | 0.0000497655 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 2 | CH_ath_7 | 9 | 9 | 0.0000000000350278 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 3 | CH_ath_23 | 23 | 127 | 0.0000000000516511 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Arabidopsis thaliana | 2 | 4 | CH_ath_6 | 23 | 127 | 0.000000000118498 | GO:0030533 | triplet codon-amino acid adaptor activity |
| Glycine max | Gm11 | 1 | CH_gma_222 | 3 | 5 | 0.000049527 | GO:0003729 | mRNA binding |
| Medicago truncatula | 1 | 1 | CH_mtr_334 | 3 | 8 | 0.000208127 | GO:0003725 | double-stranded RNA binding |
| Medicago truncatula | 3 | 1 | CH_mtr_102 | 6 | 36 | 0.000000000307774 | GO:0003725 | double-stranded RNA binding |
| Medicago truncatula | AC235664.4 | 1 | CH_mtr_114 | 3 | 3 | 0.00000000183894 | GO:0003727 | single-stranded RNA binding |
| Oryza sativa ssp. japonica | 1 | 1 | CH_osa_286 | 2 | 2 | 0.000207347 | GO:0008097 | 5S rRNA binding |
| Oryza sativa ssp. indica | Chr01 | 1 | CH_osaindica_291 | 2 | 2 | 0.000216205 | GO:0008097 | 5S rRNA binding |
| Oryza sativa ssp. indica | Chr11 | 1 | CH_osaindica_279 | 3 | 6 | 0.000142182 | GO:0019843 | rRNA binding |
| Populus trichocarpa | scaffold_12 | 1 | CH_ptr_227 | 3 | 3 | 0.000022946 | GO:0019843 | rRNA binding |
| Populus trichocarpa | scaffold_19 | 1 | CH_ptr_60 | 5 | 5 | 0.00000000000698533 | GO:0003725 | double-stranded RNA binding |
| Vitis vinifera | chr19 | 1 | CH_vvi_115 | 6 | 25 | 0.00000000218016 | GO:0000049 | tRNA binding |
| Vitis vinifera | chr19 | 1 | CH_vvi_17 | 9 | 11 | 2.49362e-22 | GO:0000049 | tRNA binding |
| Vitis vinifera | chr19 | 3 | CH_vvi_54 | 13 | 297 | 0.0000000000000541693 | GO:0000049 | tRNA binding |
Functional clusters experiments
| Experiment | Type | Description | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | X |
| 2 | C_Hunter | GO | 2 | 30 | 80 | 0.001 | V |
| 3 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | X |
| 4 | C_Hunter | GO | 10 | 150 | 300 | 0.001 | V |