Functional clusters  


Information

Type
GO term
Identifier
GO:0003723
Description
RNA binding

Cluster overview

Exact GO match

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SpeciesChromosomeExperimentCluster_idCluster sizeNumber of genesE-value
Malus domestica41CH_mdo_220590.000851046
Malus domestica91CH_mdo_200440.000639121
Medicago truncatula51CH_mtr_3496170.000277627
Selaginella moellendorffiiscaffold_171CH_smo_647190.000080024
Theobroma cacaoTc101CH_tca_4313420.0000000000020624
Theobroma cacaoTc103CH_tca_3613420.0000000000020624
Vitis viniferachr193CH_vvi_113191460.0000156612

Child GO matches

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SpeciesChromosomeExperimentCluster_idCluster sizeNumber of genesE-valueGODescription
Arabidopsis thaliana11CH_ath_130303.88787e-47GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana11CH_ath_110770.000000049184GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana11CH_ath_326289.44342e-38GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana12CH_ath_226285.27892e-37GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana12CH_ath_8770.0000000743772GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana12CH_ath_130302.87186e-46GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana13CH_ath_181814.42908e-135GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana13CH_ath_326289.44342e-38GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana14CH_ath_181811.10644e-132GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana14CH_ath_226285.27892e-37GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana21CH_ath_52990.0000000000201799GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana21CH_ath_22211460.0000571891GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana21CH_ath_272380.000242393GO:0003729mRNA binding
Arabidopsis thaliana21CH_ath_1647100.00000559315GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana22CH_ath_137100.00000842539GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana22CH_ath_1611460.0000497655GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana22CH_ath_7990.0000000000350278GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana23CH_ath_23231270.0000000000516511GO:0030533triplet codon-amino acid adaptor activity
Arabidopsis thaliana24CH_ath_6231270.000000000118498GO:0030533triplet codon-amino acid adaptor activity
Glycine maxGm111CH_gma_222350.000049527GO:0003729mRNA binding
Medicago truncatula11CH_mtr_334380.000208127GO:0003725double-stranded RNA binding
Medicago truncatula31CH_mtr_1026360.000000000307774GO:0003725double-stranded RNA binding
Medicago truncatulaAC235664.41CH_mtr_114330.00000000183894GO:0003727single-stranded RNA binding
Oryza sativa ssp. japonica11CH_osa_286220.000207347GO:00080975S rRNA binding
Oryza sativa ssp. indicaChr011CH_osaindica_291220.000216205GO:00080975S rRNA binding
Oryza sativa ssp. indicaChr111CH_osaindica_279360.000142182GO:0019843rRNA binding
Populus trichocarpascaffold_121CH_ptr_227330.000022946GO:0019843rRNA binding
Populus trichocarpascaffold_191CH_ptr_60550.00000000000698533GO:0003725double-stranded RNA binding
Vitis viniferachr191CH_vvi_1156250.00000000218016GO:0000049tRNA binding
Vitis viniferachr191CH_vvi_179112.49362e-22GO:0000049tRNA binding
Vitis viniferachr193CH_vvi_54132970.0000000000000541693GO:0000049tRNA binding

Functional clusters experiments

Experiment Type Description Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1C_HunterGO230800.001X
2C_HunterGO230800.001V
3C_HunterGO101503000.001X
4C_HunterGO101503000.001V