Download section
Documents and presentations
File | Description |
---|---|
PLAZA_PGE_poster.pptx | Poster for PLAZA 2.5 |
PLAZA_flyer_2.5.pdf | Flyer presenting the capabilities of the PLAZA 2.5 platform. |
PLAZA_flyer_3.0.pdf | Flyer presenting the capabilities of the PLAZA 3.0 platform. |
PLAZA_presentation.ppt | Presentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22. |
Annotation
Fasta data
Intra-species block duplicates
Gene family data
Data type | Gene families (HOM) | Sub families (ORTH) |
---|---|---|
genefamily_data | genefamily_data.hom.csv.gz (3.28 MB) | genefamily_data.orth.csv.gz (3.76 MB) |
genefamily_enrichment | genefamily_enrichment.hom.csv.gz (3.16 MB) | genefamily_enrichment.orth.csv.gz (12.86 MB) |
Integrative Orthology data
Orthology type | Description | Data file |
---|---|---|
BHIF | Orthologs detected through best-BLAST hits | integrative_orthology.BHIF.csv.gz (64.89 MB) |
ORTHO | Orthologs detected through OrthoMCL clustering | integrative_orthology.ORTHO.csv.gz (52.41 MB) |
TROG | Orthologs detected through phylogenetic trees | integrative_orthology.TROG.csv.gz (53.86 MB) |
anchor_point | Orthologs detected through colinearity information | integrative_orthology.anchor_point.csv.gz (13.44 MB) |