InterPro domain page  


InterPro id
IPR019559
Description
Cullin protein, neddylation domain
Number of genes
154

InterPro distribution

aly
Arabidopsis lyrata(5 genes)
ath
Arabidopsis thaliana(6 genes)
bdi
Brachypodium distachyon(7 genes)
cpa
Carica papaya(5 genes)
cre
Chlamydomonas reinhardtii(3 genes)
gma
Glycine max(16 genes)
lja
Lotus japonicus(4 genes)
mdo
Malus domestica(16 genes)
mes
Manihot esculenta(11 genes)
mrcc299
Micromonas sp. RCC299(3 genes)
mtr
Medicago truncatula(11 genes)
olu
Ostreococcus lucimarinus(3 genes)
osa
Oryza sativa ssp. japonica(8 genes)
osaindica
Oryza sativa ssp. indica(8 genes)
ota
Ostreococcus tauri(3 genes)
ppa
Physcomitrella patens(7 genes)
ptr
Populus trichocarpa(8 genes)
rco
Ricinus communis(4 genes)
sbi
Sorghum bicolor(6 genes)
smo
Selaginella moellendorffii(8 genes)
vca
Volvox carteri(3 genes)
vvi
Vitis vinifera(5 genes)
zma
Zea mays(4 genes)
 
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 154 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AL6G38800 aly name=scaffold_604014.1;pid=911957;prot=eq;tid=943470 - scaffold_6 coding
AL8G02070 aly name=scaffold_800214.1;pid=916814;prot=eq;tid=948327 + scaffold_8 coding
AL2G17930 aly name=fgenesh2_kg.2__1230__AT1G69670.1;pid=476100;prot=eq;tid=476100 - scaffold_2 coding
AL1G02260 aly name=fgenesh1_pm.C_scaffold_1000178;pid=311398;prot=eq;tid=311398 + scaffold_1 coding
AL1G26600 aly name=fgenesh2_kg.1__2664__AT1G26830.1;pid=472710;prot=eq;tid=472710 + scaffold_1 coding
AT4G02570 ath Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.;ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding transcript=eq;prot=eq; + 4 coding
AT1G69670 ath cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.;CUL3B (CULLIN 3B); protein binding / ubiquitin-protein ligase transcript=eq;prot=eq; - 1 coding
AT1G26830 ath Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.;ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase transcript=eq;prot=eq; + 1 coding
AT1G02980 ath encodes an Arabidopsis cullin;CUL2 (CULLIN 2); ubiquitin protein ligase binding transcript=eq;prot=eq; + 1 coding
AT1G43140 ath ubiquitin protein ligase binding; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, cullin-RING ubiquitin ligase complex; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL2 (CULLIN 2); ubiquitin protein ligase binding (TAIR:AT1G02980.1).;ubiquitin protein ligase binding transcript=eq;prot=eq; + 1 coding
AT5G46210 ath Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.;CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase transcript=eq;prot=eq; - 5 coding
BD2G12970 bdi name=Bradi2g12970.1;transcript=eq;prot=eq + Bd2 coding
BD3G15900 bdi name=Bradi3g15900.1;transcript=eq;prot=eq + Bd3 coding
BD1G06390 bdi name=Bradi1g06390.1;transcript=eq;prot=eq - Bd1 coding
BD2G35830 bdi name=Bradi2g35830.1;transcript=eq;prot=eq + Bd2 coding
BD2G35820 bdi name=Bradi2g35820.1;transcript=eq;prot=eq + Bd2 coding
BD5G23650 bdi name=Bradi5g23650.1;transcript=eq;prot=eq + Bd5 coding
BD3G59330 bdi name=Bradi3g59330.1;transcript=eq;prot=eq + Bd3 coding
CP00166G00010 cpa name=evm.TU.supercontig_166.1;pid=evm.TU.supercontig_166.1;prot=eq;transcript=eq + supercontig_166 coding
CP00128G00100 cpa name=evm.TU.supercontig_128.10;pid=evm.TU.supercontig_128.10;prot=eq;transcript=eq + supercontig_128 coding
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