InterPro domain page  


InterPro id
IPR003034
Description
DNA-binding SAP
Number of genes
301

InterPro distribution

aly
Arabidopsis lyrata(10 genes)
ath
Arabidopsis thaliana(9 genes)
bdi
Brachypodium distachyon(14 genes)
cpa
Carica papaya(6 genes)
cre
Chlamydomonas reinhardtii(10 genes)
gma
Glycine max(19 genes)
lja
Lotus japonicus(8 genes)
mdo
Malus domestica(16 genes)
mes
Manihot esculenta(21 genes)
mrcc299
Micromonas sp. RCC299(26 genes)
mtr
Medicago truncatula(9 genes)
olu
Ostreococcus lucimarinus(11 genes)
osa
Oryza sativa ssp. japonica(14 genes)
osaindica
Oryza sativa ssp. indica(16 genes)
ota
Ostreococcus tauri(12 genes)
ppa
Physcomitrella patens(10 genes)
ptr
Populus trichocarpa(19 genes)
rco
Ricinus communis(10 genes)
sbi
Sorghum bicolor(13 genes)
smo
Selaginella moellendorffii(15 genes)
vca
Volvox carteri(11 genes)
vvi
Vitis vinifera(10 genes)
zma
Zea mays(12 genes)
 
Click an area on the pie-chart to view associated genes.
This page uses the Flash plugin.

Toolbox


Index of genes with 1 constraints:

Page 1 of 16, showing 20 records out of 301 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AL8G30010 aly name=scaffold_803034.1;pid=919634;prot=eq;tid=951147 - scaffold_8 coding
AL7G01870 aly name=scaffold_700193.1;pid=912451;prot=eq;tid=943964 - scaffold_7 coding
AL8G26610 aly name=fgenesh2_kg.8__2005__AT5G60410.5;pid=496189;prot=eq;tid=496189 + scaffold_8 coding
AL3G03830 aly name=fgenesh2_kg.3__387__AT3G04260.1;pid=477686;prot=eq;tid=477686 - scaffold_3 coding
AL6G39020 aly name=scaffold_604038.1;pid=911981;prot=eq;tid=943494 - scaffold_6 coding
AL5G13430 aly name=Al_scaffold_0005_1290;pid=865811;prot=eq;tid=897324 - scaffold_5 coding
AL5G02290 aly name=fgenesh1_pg.C_scaffold_5000166;pid=346774;prot=eq;tid=346774 + scaffold_5 coding
AL1G17840 aly name=fgenesh2_kg.1__1852__AT1G16970.1;pid=471898;prot=eq;tid=471898 - scaffold_1 coding
AL5G02160 aly name=Al_scaffold_0005_195;pid=864716;prot=eq;tid=896229 + scaffold_5 coding
AL8G33740 aly name=Al_scaffold_0008_3238;pid=886974;prot=eq;tid=918487 + scaffold_8 coding
AT4G02390 ath Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .;APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE); NAD+ ADP-ribosyltransferase/ nucleic acid binding transcript=eq;prot=eq; + 4 coding
AT5G63460 ath SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).;SAP domain-containing protein transcript=eq;prot=eq; - 5 coding
AT2G41460 ath apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.;ARP; DNA-(apurinic or apyrimidinic site) lyase transcript=eq;prot=eq; + 2 coding
AT3G04260 ath PLASTID TRANSCRIPTIONALLY ACTIVE3 (PTAC3); FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G31400.1); Has 10915 Blast hits to 7140 proteins in 338 species: Archae - 17; Bacteria - 223; Metazoa - 4524; Fungi - 999; Plants - 2168; Viruses - 215; Other Eukaryotes - 2769 (source: NCBI BLink).;PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding / nucleic acid binding transcript=eq;prot=eq; - 3 coding
AT5G66840 ath SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 8987 Blast hits to 4530 proteins in 373 species: Archae - 8; Bacteria - 765; Metazoa - 3139; Fungi - 1008; Plants - 580; Viruses - 290; Other Eukaryotes - 3197 (source: NCBI BLink).;SAP domain-containing protein transcript=eq;prot=eq; - 5 coding
AT4G39680 ath SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 10132 Blast hits to 6217 proteins in 537 species: Archae - 24; Bacteria - 931; Metazoa - 3852; Fungi - 1124; Plants - 2077; Viruses - 539; Other Eukaryotes - 1585 (source: NCBI BLink).;SAP domain-containing protein transcript=eq;prot=eq; - 4 coding
AT5G25060 ath RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942), SWAP/Surp (InterPro:IPR000061), DNA-binding SAP (InterPro:IPR003034), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G10800.1); Has 20992 Blast hits to 12473 proteins in 454 species: Archae - 5; Bacteria - 476; Metazoa - 11422; Fungi - 2912; Plants - 1731; Viruses - 39; Other Eukaryotes - 4407 (source: NCBI BLink).;RNA recognition motif (RRM)-containing protein transcript=eq;prot=eq; - 5 coding
AT1G16970 ath Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.;KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding transcript=eq;prot=eq; - 1 coding
AT5G60410 ath Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.;SIZ1; DNA binding / SUMO ligase transcript=eq;prot=eq; + 5 coding
BD2G38030 bdi name=Bradi2g38030.1;transcript=eq;prot=eq + Bd2 coding
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
type