InterPro domain page  


InterPro id
IPR001813
Description
Ribosomal protein 60S
Number of genes
275

InterPro distribution

aly
Arabidopsis lyrata(19 genes)
ath
Arabidopsis thaliana(14 genes)
bdi
Brachypodium distachyon(10 genes)
cpa
Carica papaya(10 genes)
cre
Chlamydomonas reinhardtii(3 genes)
gma
Glycine max(17 genes)
lja
Lotus japonicus(7 genes)
mdo
Malus domestica(52 genes)
mes
Manihot esculenta(22 genes)
mrcc299
Micromonas sp. RCC299(3 genes)
mtr
Medicago truncatula(5 genes)
olu
Ostreococcus lucimarinus(3 genes)
osa
Oryza sativa ssp. japonica(12 genes)
osaindica
Oryza sativa ssp. indica(12 genes)
ota
Ostreococcus tauri(2 genes)
ppa
Physcomitrella patens(14 genes)
ptr
Populus trichocarpa(11 genes)
rco
Ricinus communis(9 genes)
sbi
Sorghum bicolor(9 genes)
smo
Selaginella moellendorffii(12 genes)
vca
Volvox carteri(3 genes)
vvi
Vitis vinifera(12 genes)
zma
Zea mays(14 genes)
 
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Index of genes with 1 constraints:

Page 1 of 14, showing 20 records out of 275 total, starting on record 1, ending on 20

gene_id species description comment strand chr type
AL7G16210 aly name=fgenesh2_kg.7__1661__AT4G25890.1;pid=492228;prot=eq;tid=492228 + scaffold_7 coding
AL1G01270 aly name=fgenesh1_pm.C_scaffold_1000104;pid=311324;prot=eq;tid=311324 + scaffold_1 coding
AL6G24580 aly name=fgenesh2_kg.6__2447__AT5G24510.1;pid=489313;prot=eq;tid=489313 - scaffold_6 coding
AL7G37950 aly name=fgenesh2_kg.7__3414__AT5G40040.1;pid=493981;prot=eq;tid=493981 + scaffold_7 coding
AL8G00180 aly name=fgenesh1_pm.C_scaffold_8000008;pid=330665;prot=eq;tid=330665 + scaffold_8 coding
AL6G40820 aly name=fgenesh2_kg.6__3618__AT4G00810.1;pid=490484;prot=eq;tid=490484 + scaffold_6 coding
AL5G12370 aly name=fgenesh2_kg.5__862__AT3G44590.1;pid=484870;prot=eq;tid=484870 + scaffold_5 coding
AL5G07840 aly name=fgenesh2_kg.5__617__AT3G28500.1;pid=484625;prot=eq;tid=484625 + scaffold_5 coding
AL0G07790 aly name=fgenesh2_kg.352__1__AT3G28500.1;pid=497404;prot=eq;tid=497404 + scaffold_352 coding
AL3G11660 aly name=fgenesh2_kg.3__1166__AT3G11250.1;pid=478465;prot=eq;tid=478465 + scaffold_3 coding
AL4G12440 aly name=Al_scaffold_0004_1217;pid=869054;prot=eq;tid=900567 - scaffold_4 coding
AL4G12450 aly name=Al_scaffold_0004_1218;pid=869055;prot=eq;tid=900568 - scaffold_4 coding
AL4G12470 aly name=Al_scaffold_0004_1219;pid=869056;prot=eq;tid=900569 - scaffold_4 coding
AL4G26680 aly name=fgenesh2_kg.4__2101__AT2G40010.1;pid=483041;prot=eq;tid=483041 - scaffold_4 coding
AL3G09360 aly name=fgenesh2_kg.3__936__AT3G09200.1;pid=478235;prot=eq;tid=478235 - scaffold_3 coding
AL5G18580 aly name=scaffold_501929.1;pid=906225;prot=eq;tid=937738 - scaffold_5 coding
AL5G18590 aly name=scaffold_501931.1;pid=906227;prot=eq;tid=937740 - scaffold_5 coding
AL5G18620 aly name=fgenesh1_pm.C_scaffold_5001073;pid=323529;prot=eq;tid=323529 - scaffold_5 coding
AL8G23030 aly name=scaffold_802301.1;pid=918901;prot=eq;tid=950414 - scaffold_8 coding
AT5G47700 ath 60S acidic ribosomal protein P1 (RPP1C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1A) (TAIR:AT1G01100.4); Has 1683 Blast hits to 1682 proteins in 292 species: Archae - 49; Bacteria - 5; Metazoa - 682; Fungi - 360; Plants - 319; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).;60S acidic ribosomal protein P1 (RPP1C) transcript=eq;prot=eq; - 5 coding
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