Gene family  

Sub-families
ORTHO029940 (3 genes in 2 species)
ORTHO042020 (2 genes in 2 species)
ORTHO043456 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (7 genes)
mtr
Medicago truncatula (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family HOM006450 has 20 genes in 4 species (0 outlier genes).
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G08740 aly name=fgenesh2_kg.457__2__AT2G35310.1;pid=497432;prot=eq;tid=497432 - scaffold_457 No
AL3G18280 aly name=fgenesh1_pm.C_scaffold_3001481;pid=318465;prot=eq;tid=318465 + scaffold_3 No
AL3G35320 aly name=Al_scaffold_0003_3435;pid=874794;prot=eq;tid=906307 - scaffold_3 No
AL3G40130 aly name=scaffold_304250.1;pid=900280;prot=eq;tid=931793 - scaffold_3 No
AL3G40150 aly name=fgenesh2_kg.3__3493__AT2G16210.1;pid=480792;prot=eq;tid=480792 - scaffold_3 No
AL4G20660 aly name=fgenesh2_kg.4__1555__AT2G35310.1;pid=482495;prot=eq;tid=482495 + scaffold_4 No
AL5G19840 aly name=Al_scaffold_0005_1886;pid=866407;prot=eq;tid=897920 - scaffold_5 No
AL6G09430 aly name=Al_scaffold_0006_879;pid=861370;prot=eq;tid=892883 - scaffold_6 No
AL6G17960 aly name=fgenesh1_pg.C_scaffold_6001499;pid=350906;prot=eq;tid=350906 - scaffold_6 No
AL6G18100 aly name=fgenesh2_kg.6__1808__AT5G18090.1;pid=488674;prot=eq;tid=488674 + scaffold_6 No
AL8G01210 aly name=fgenesh1_pm.C_scaffold_8000081;pid=330738;prot=eq;tid=330738 + scaffold_8 No
AT2G16210 ath transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G35310.1); Has 149 Blast hits to 142 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;transcriptional factor B3 family protein transcript=eq;prot=eq; - 2 No
AT2G35310 ath transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G16210.1); Has 136 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;transcriptional factor B3 family protein transcript=eq;prot=eq; + 2 No
AT3G17010 ath transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.;transcriptional factor B3 family protein transcript=eq;prot=eq; + 3 No
AT5G09780 ath transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G16210.1); Has 157 Blast hits to 147 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;transcriptional factor B3 family protein transcript=eq;prot=eq; - 5 No
AT5G18000 ath transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G18090.1); Has 261 Blast hits to 236 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 238; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).;transcriptional factor B3 family protein transcript=eq;prot=eq; - 5 No
AT5G18090 ath transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G18000.1); Has 144 Blast hits to 134 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;transcriptional factor B3 family protein transcript=eq;prot=eq; + 5 No
AT5G46915 ath transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G16210.1); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;transcriptional factor B3 family protein transcript=eq;prot=eq; - 5 No
MT4G30060 mtr Transcriptional factor B3 transcript=eq;prot=eq;pid=Medtr4g092800.1; + 4 No
VV03G07610 vvi name=GSVIVG01031850001; transcript=eq;prot=eq;name=GSVIVG01031850001;pid=GSVIVG01031850001;tid=GSVIVT01031850001; + chr3 No
<< previous
next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier