Gene family  

Sub-families
ORTHO005899 (24 genes in 16 species)
ORTHO011439 (15 genes in 8 species)
ORTHO026441 (4 genes in 3 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (8 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (6 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM001484 has 73 genes in 17 species (1 outlier gene).
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 73 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G39780 aly name=fgenesh1_pm.C_scaffold_3002827;pid=319811;prot=eq;tid=319811 + scaffold_3 No
AL5G11790 aly name=fgenesh2_kg.5__826__AT3G48650.1;pid=484834;prot=eq;tid=484834 - scaffold_5 No
AL5G27490 aly name=scaffold_502873.1;pid=907169;prot=eq;tid=938682 - scaffold_5 No
AL7G06640 aly name=fgenesh1_pg.C_scaffold_7000564;pid=353391;prot=eq;tid=353391 - scaffold_7 No
AL7G06650 aly name=fgenesh2_kg.7__666__AT4G34320.1;pid=491233;prot=eq;tid=491233 - scaffold_7 No
AL7G35000 aly name=scaffold_703677.1;pid=915935;prot=eq;tid=947448 - scaffold_7 Yes
AL8G33970 aly name=fgenesh2_kg.8__2750__AT5G66675.1;pid=496934;prot=eq;tid=496934 + scaffold_8 No
AL8G33980 aly name=scaffold_803458.1;pid=920058;prot=eq;tid=951571 + scaffold_8 No
AL8G33990 aly name=scaffold_803459.1;pid=920059;prot=eq;tid=951572 + scaffold_8 No
AT2G18630 ath unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, peroxisome, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66675.1); Has 156 Blast hits to 156 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 13; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
AT3G28270 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT3G28290 ath Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.;AT14A transcript=eq;prot=eq; + 3 No
AT3G28300 ath Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.;AT14A transcript=eq;prot=eq; + 3 No
AT3G57100 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34320.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT4G34320 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, hypocotyl, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34330.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). transcript=eq;prot=eq; + 4 No
AT4G34330 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34320.1); Has 96 Blast hits to 96 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 4 No
AT5G66660 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66670.2); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
AT5G66670 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66660.1); Has 108 Blast hits to 108 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
AT5G66675 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18630.1); Has 135 Blast hits to 135 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
BD1G71240 bdi name=Bradi1g71240.1;transcript=eq;prot=eq - Bd1 No
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