Gene family  

Sub-families
ORTHO000576 (51 genes in 23 species)
ORTHO026465 (4 genes in 3 species)
ORTHO046029 (2 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (9 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (2 genes)



The gene family HOM001428 has 76 genes in 23 species (2 outlier genes).
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G09360 aly name=fgenesh2_kg.3__936__AT3G09200.1;pid=478235;prot=eq;tid=478235 - scaffold_3 No
AL3G11660 aly name=fgenesh2_kg.3__1166__AT3G11250.1;pid=478465;prot=eq;tid=478465 + scaffold_3 No
AL4G26680 aly name=fgenesh2_kg.4__2101__AT2G40010.1;pid=483041;prot=eq;tid=483041 - scaffold_4 No
AT2G40010 ath 60S acidic ribosomal protein P0 (RPP0A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0B) (TAIR:AT3G09200.1); Has 1215 Blast hits to 1213 proteins in 358 species: Archae - 223; Bacteria - 4; Metazoa - 421; Fungi - 185; Plants - 112; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).;60S acidic ribosomal protein P0 (RPP0A) transcript=eq;prot=eq; - 2 No
AT3G09200 ath 60S acidic ribosomal protein P0 (RPP0B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, response to cold, translation; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 1212 Blast hits to 1209 proteins in 357 species: Archae - 223; Bacteria - 1; Metazoa - 420; Fungi - 182; Plants - 109; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).;60S acidic ribosomal protein P0 (RPP0B) transcript=eq;prot=eq; - 3 No
AT3G11250 ath 60S acidic ribosomal protein P0 (RPP0C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, translation; LOCATED IN: cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0B) (TAIR:AT3G09200.1); Has 1503 Blast hits to 1500 proteins in 380 species: Archae - 223; Bacteria - 1; Metazoa - 578; Fungi - 277; Plants - 141; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).;60S acidic ribosomal protein P0 (RPP0C) transcript=eq;prot=eq; + 3 No
BD3G14340 bdi name=Bradi3g14340.1;transcript=eq;prot=eq - Bd3 No
BD3G19390 bdi name=Bradi3g19390.1;transcript=eq;prot=eq - Bd3 No
BD5G15650 bdi name=Bradi5g15650.1;transcript=eq;prot=eq + Bd5 No
CP00019G02040 cpa name=evm.TU.supercontig_19.205;pid=evm.TU.supercontig_19.205;prot=eq;transcript=eq - supercontig_19 No
CP00040G00170 cpa name=evm.TU.supercontig_40.17;pid=evm.TU.supercontig_40.17;prot=eq;transcript=eq + supercontig_40 No
CP00112G00400 cpa name=evm.TU.supercontig_112.40;pid=evm.TU.supercontig_112.40;prot=eq;transcript=eq + supercontig_112 No
CP28202G00010 cpa name=evm.TU.contig_28202.1;pid=evm.TU.contig_28202.1;prot=eq;transcript=eq + contig_28202 No
CR12G07700 cre name=fgenesh2_kg.C_scaffold_31000058;pid=164097;prot=eq;tid=164097;transcript=eq + chromosome_12 No
GM02G42260 gma 02 pid=16249891;transcript=eq;prot=eq;name=Glyma02g42260.1 - Gm02 No
GM02G42270 gma 02 pid=16249893;transcript=eq;prot=eq;name=Glyma02g42270.1 - Gm02 No
GM09G24800 gma 09 pid=16276164;transcript=eq;prot=eq;name=Glyma09g24800.1 - Gm09 No
GM11G35060 gma 11 pid=16285434;transcript=eq;prot=eq;name=Glyma11g35060.1 - Gm11 No
GM11G35070 gma 11 pid=16285435;transcript=eq;prot=eq;name=Glyma11g35070.1 - Gm11 No
GM14G06620 gma 14 pid=16294596;transcript=eq;prot=eq;name=Glyma14g06620.1 + Gm14 No
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