Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_ath_122
Cluster type
GO
Species
Arabidopsis thaliana
Chromosome
3
E-value
0.000000427199
GO label
GO:0008305
GO description
integrin complex
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0014847310317

Gene information

In cluster Gene id Description Gene type Gene family
V AT3G28270FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink).Coding geneHOM001484 ORTHO024672
X AT3G28280FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 37 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM002589 ORTHO030402
V AT3G28290Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.;AT14ACoding geneHOM001484 ORTHO045246
X AT3G28291unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).Coding genesingleton
X AT3G28295gypsy-like retrotransposon family, has a 6.4e-29 P-value blast match to aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);rna_type=other_rna;transposable element geneTransposon
V AT3G28300Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.;AT14ACoding geneHOM001484 ORTHO045246