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Documents and presentations

File Description
PLAZA_PGE_poster.pptx (5.41 MB)Poster for PLAZA 2.5
PLAZA_flyer_2.5.pdf (2.19 MB)Flyer presenting the capabilities of the PLAZA 2.5 platform.
PLAZA_flyer_3.0.pdf (1.22 MB)Flyer presenting the capabilities of the PLAZA 3.0 platform.
PLAZA_presentation.ppt (6.73 MB)Presentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22.

Annotation

Species Annotation GO Annotation Interpro
Arabidopsis thaliana annotation.ath.csv.gz (18.88 MB) go.ath.csv.gz (2.41 MB) interpro.ath.csv.gz (2.11 MB)
Carica papaya annotation.cpa.csv.gz (9.24 MB) go.cpa.csv.gz (402.49 KB) interpro.cpa.csv.gz (1.41 MB)
Chlamydomonas reinhardtii annotation.cre.csv.gz (8.70 MB) go.cre.csv.gz (146.29 KB) interpro.cre.csv.gz (779.12 KB)
Ostreococcus lucimarinus annotation.olu.csv.gz (3.05 MB) go.olu.csv.gz (85.24 KB) interpro.olu.csv.gz (541.20 KB)
Oryza sativa ssp. japonica annotation.osa.csv.gz (26.64 MB) go.osa.csv.gz (910.44 KB) interpro.osa.csv.gz (2.26 MB)
Physcomitrella patens annotation.ppa.csv.gz (14.17 MB) go.ppa.csv.gz (293.62 KB) interpro.ppa.csv.gz (1.58 MB)
Populus trichocarpa annotation.ptr.csv.gz (16.96 MB) go.ptr.csv.gz (643.96 KB) interpro.ptr.csv.gz (2.83 MB)
Sorghum bicolor annotation.sbi.csv.gz (14.26 MB) go.sbi.csv.gz (486.75 KB) interpro.sbi.csv.gz (2.28 MB)
Vitis vinifera annotation.vvi.csv.gz (10.93 MB) go.vvi.csv.gz (553.90 KB) interpro.vvi.csv.gz (1.91 MB)
Arabidopsis lyrata annotation.aly.csv.gz (13.06 MB) go.aly.csv.gz (816.45 KB) interpro.aly.csv.gz (2.07 MB)
Brachypodium distachyon annotation.bdi.csv.gz (11.75 MB) go.bdi.csv.gz (365.52 KB) interpro.bdi.csv.gz (1.76 MB)
Glycine max annotation.gma.csv.gz (20.84 MB) go.gma.csv.gz (818.69 KB) interpro.gma.csv.gz (3.63 MB)
Malus domestica annotation.mdo.csv.gz (39.33 MB) go.mdo.csv.gz (1.15 MB) interpro.mdo.csv.gz (3.83 MB)
Manihot esculenta annotation.mes.csv.gz (14.79 MB) go.mes.csv.gz (649.69 KB) interpro.mes.csv.gz (2.55 MB)
Micromonas sp. RCC299 annotation.mrcc299.csv.gz (4.71 MB) go.mrcc299.csv.gz (112.61 KB) interpro.mrcc299.csv.gz (709.67 KB)
Oryza sativa ssp. indica annotation.osaindica.csv.gz (24.63 MB) go.osaindica.csv.gz (614.38 KB) interpro.osaindica.csv.gz (2.64 MB)
Ostreococcus tauri annotation.ota.csv.gz (3.48 MB) go.ota.csv.gz (63.00 KB) interpro.ota.csv.gz (503.28 KB)
Ricinus communis annotation.rco.csv.gz (11.52 MB) go.rco.csv.gz (464.78 KB) interpro.rco.csv.gz (1.96 MB)
Selaginella moellendorffii annotation.smo.csv.gz (14.54 MB) go.smo.csv.gz (381.20 KB) interpro.smo.csv.gz (2.60 MB)
Volvox carteri annotation.vca.csv.gz (9.02 MB) go.vca.csv.gz (101.84 KB) interpro.vca.csv.gz (724.80 KB)
Zea mays annotation.zma.csv.gz (12.87 MB) go.zma.csv.gz (485.49 KB) interpro.zma.csv.gz (2.09 MB)
Lotus japonicus annotation.lja.csv.gz (20.89 MB) go.lja.csv.gz (421.33 KB) interpro.lja.csv.gz (1.73 MB)
Medicago truncatula annotation.mtr.csv.gz (14.73 MB) go.mtr.csv.gz (552.86 KB) interpro.mtr.csv.gz (2.01 MB)
All species annotation.csv.gz (338.99 MB) go.csv.gz (9.48 MB) interpro.csv.gz (44.57 MB)

Fasta data

Species CDS files Protein files
Arabidopsis thaliana cds.ath.tfa.gz (12.56 MB) proteome.ath.tfa.gz (6.38 MB)
Carica papaya cds.cpa.tfa.gz (7.14 MB) proteome.cpa.tfa.gz (4.72 MB)
Chlamydomonas reinhardtii cds.cre.tfa.gz (6.74 MB) proteome.cre.tfa.gz (4.51 MB)
Ostreococcus lucimarinus cds.olu.tfa.gz (2.64 MB) proteome.olu.tfa.gz (1.68 MB)
Oryza sativa ssp. japonica cds.osa.tfa.gz (21.78 MB) proteome.osa.tfa.gz (8.24 MB)
Physcomitrella patens cds.ppa.tfa.gz (11.10 MB) proteome.ppa.tfa.gz (6.09 MB)
Populus trichocarpa cds.ptr.tfa.gz (13.13 MB) proteome.ptr.tfa.gz (8.64 MB)
Sorghum bicolor cds.sbi.tfa.gz (11.54 MB) proteome.sbi.tfa.gz (7.29 MB)
Vitis vinifera cds.vvi.tfa.gz (8.23 MB) proteome.vvi.tfa.gz (5.47 MB)
Arabidopsis lyrata cds.aly.tfa.gz (10.05 MB) proteome.aly.tfa.gz (6.79 MB)
Brachypodium distachyon cds.bdi.tfa.gz (9.38 MB) proteome.bdi.tfa.gz (6.09 MB)
Glycine max cds.gma.tfa.gz (16.53 MB) proteome.gma.tfa.gz (11.10 MB)
Malus domestica cds.mdo.tfa.gz (32.74 MB) proteome.mdo.tfa.gz (13.74 MB)
Manihot esculenta cds.mes.tfa.gz (12.66 MB) proteome.mes.tfa.gz (8.53 MB)
Micromonas sp. RCC299 cds.mrcc299.tfa.gz (4.08 MB) proteome.mrcc299.tfa.gz (2.69 MB)
Oryza sativa ssp. indica cds.osaindica.tfa.gz (20.59 MB) proteome.osaindica.tfa.gz (10.55 MB)
Ostreococcus tauri cds.ota.tfa.gz (2.87 MB) proteome.ota.tfa.gz (1.93 MB)
Ricinus communis cds.rco.tfa.gz (8.98 MB) proteome.rco.tfa.gz (6.06 MB)
Selaginella moellendorffii cds.smo.tfa.gz (11.59 MB) proteome.smo.tfa.gz (7.81 MB)
Volvox carteri cds.vca.tfa.gz (7.19 MB) proteome.vca.tfa.gz (4.74 MB)
Zea mays cds.zma.tfa.gz (9.97 MB) proteome.zma.tfa.gz (6.72 MB)
Lotus japonicus cds.lja.tfa.gz (17.54 MB) proteome.lja.tfa.gz (3.97 MB)
Medicago truncatula cds.mtr.tfa.gz (11.18 MB) proteome.mtr.tfa.gz (7.48 MB)
All species Not Available proteome.tfa.gz (150.90 MB)

Intra-species block duplicates

Species Anchorpoints
Arabidopsis thaliana anchorpoints.ath.csv.gz (2.23 MB)
Carica papaya anchorpoints.cpa.csv.gz (1.46 MB)
Chlamydomonas reinhardtii anchorpoints.cre.csv.gz (41.06 KB)
Ostreococcus lucimarinus anchorpoints.olu.csv.gz (55.60 KB)
Oryza sativa ssp. japonica anchorpoints.osa.csv.gz (1.84 MB)
Physcomitrella patens anchorpoints.ppa.csv.gz (16.06 KB)
Populus trichocarpa anchorpoints.ptr.csv.gz (3.37 MB)
Sorghum bicolor anchorpoints.sbi.csv.gz (1.25 MB)
Vitis vinifera anchorpoints.vvi.csv.gz (2.06 MB)
Arabidopsis lyrata anchorpoints.aly.csv.gz (2.18 MB)
Brachypodium distachyon anchorpoints.bdi.csv.gz (1.18 MB)
Glycine max anchorpoints.gma.csv.gz (4.85 MB)
Malus domestica anchorpoints.mdo.csv.gz (2.06 MB)
Manihot esculenta anchorpoints.mes.csv.gz (2.36 MB)
Micromonas sp. RCC299 anchorpoints.mrcc299.csv.gz (178.00 B)
Oryza sativa ssp. indica anchorpoints.osaindica.csv.gz (407.07 KB)
Ostreococcus tauri anchorpoints.ota.csv.gz (52.44 KB)
Ricinus communis anchorpoints.rco.csv.gz (1.71 MB)
Selaginella moellendorffii anchorpoints.smo.csv.gz (174.10 KB)
Volvox carteri anchorpoints.vca.csv.gz (61.32 KB)
Zea mays anchorpoints.zma.csv.gz (1.10 MB)
Lotus japonicus anchorpoints.lja.csv.gz (568.27 KB)
Medicago truncatula anchorpoints.mtr.csv.gz (1.25 MB)
All species anchorpoints.csv.gz (15.82 MB)
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