Gene family  

Id
HOM000372
Method
BLASTP E_value=1e-05 MCL_I=2
Sub-families
ORTHO000696 (19 genes in 9 species)
ORTHO001091 (16 genes in 9 species)
ORTHO002702 (12 genes in 9 species)
View all sub-families (5)
Keywords


Overview of gene family content



The gene family HOM000372 has 71 genes in 9 species (0 outlier genes).
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 71 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT1G02980 ath encodes an Arabidopsis cullin;CUL2 (cullin 2) encodes an Arabidopsis cullin;CUL2 (cullin 2) + 1 No
AT1G26830 ath Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.;ATCUL3/ATCUL3A/CUL3/CUL3A (Cullin 3A); protein binding / ubiquitin-protein ligase Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.;ATCUL3/ATCUL3A/CUL3/CUL3A (Cullin 3A); protein binding / ubiquitin-protein ligase + 1 No
AT1G59790 ath similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.3); similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.2); similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70971.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373);cullin-related similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.3); similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.2); similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70971.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373);cullin-related + 1 No
AT1G59800 ath similar to cullin-related [Arabidopsis thaliana] (TAIR:AT1G59790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70971.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373);cullin-related similar to cullin-related [Arabidopsis thaliana] (TAIR:AT1G59790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70971.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373);cullin-related + 1 No
AT1G69670 ath cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.;ATCUL3B/CUL3B (Cullin 3B); protein binding / ubiquitin-protein ligase cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.;ATCUL3B/CUL3B (Cullin 3B); protein binding / ubiquitin-protein ligase - 1 No
AT3G46910 ath similar to CUL4 (CULLIN4), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G46210.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75926.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40323.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373) similar to CUL4 (CULLIN4), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G46210.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75926.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40323.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373) + 3 No
AT4G02570 ath Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.;ATCUL1 (CULLIN 1) Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.;ATCUL1 (CULLIN 1) + 4 No
AT4G12100 ath similar to CUL4 (CULLIN4), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G46210.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75926.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40323.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373) similar to CUL4 (CULLIN4), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G46210.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75926.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40323.1); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterPro:IPR001373) - 4 No
AT5G46210 ath Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.;CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.;CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase - 5 No
CP00009G01820 cpa - supercontig_9 No
CP00128G00090 cpa + supercontig_128 No
CP00128G00100 cpa + supercontig_128 No
CP00166G00010 cpa + supercontig_166 No
CP00878G00010 cpa - supercontig_878 No
CP34818G00010 cpa - contig_34818 No
CP41778G00010 cpa - contig_41778 No
CR00006G03230 cre + scaffold_6 No
CR00018G01890 cre + scaffold_18 No
CR00089G00260 cre + scaffold_89 No
OL03G02820 olu NULL NULL - Chr_3 No
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