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Documents and presentations

File Description
PLAZA_PGE_poster.pptx (5.41 MB)Poster for PLAZA 2.5
PLAZA_flyer_2.5.pdf (2.19 MB)Flyer presenting the capabilities of the PLAZA 2.5 platform.
PLAZA_flyer_3.0.pdf (1.22 MB)Flyer presenting the capabilities of the PLAZA 3.0 platform.
PLAZA_presentation.ppt (6.73 MB)Presentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22.

Annotation

Species Annotation GO Annotation Interpro
Arabidopsis thaliana annotation.ath.csv.gz (17.73 MB) go.ath.csv.gz (1.24 MB) interpro.ath.csv.gz (1.30 MB)
Oryza sativa annotation.osa.csv.gz (26.73 MB) go.osa.csv.gz (1.88 MB) interpro.osa.csv.gz (2.94 MB)
Populus trichocarpa annotation.ptr.csv.gz (16.46 MB) go.ptr.csv.gz (1.03 MB) interpro.ptr.csv.gz (2.06 MB)
Vitis vinifera annotation.vvi.csv.gz (12.57 MB) go.vvi.csv.gz (584.76 KB) interpro.vvi.csv.gz (2.02 MB)
Physcomitrella patens annotation.ppa.csv.gz (14.09 MB) go.ppa.csv.gz (382.87 KB) interpro.ppa.csv.gz (1.08 MB)
Chlamydomonas reinhardtii annotation.cre.csv.gz (7.16 MB) go.cre.csv.gz (159.81 KB) interpro.cre.csv.gz (517.85 KB)
Ostreococcus lucimarinus annotation.olu.csv.gz (3.02 MB) go.olu.csv.gz (94.60 KB) interpro.olu.csv.gz (355.58 KB)
Sorghum bicolor annotation.sbi.csv.gz (14.35 MB) go.sbi.csv.gz (396.19 KB) interpro.sbi.csv.gz (1.95 MB)
Carica papaya annotation.cpa.csv.gz (9.15 MB) go.cpa.csv.gz (242.67 KB) interpro.cpa.csv.gz (1.38 MB)
All species annotation.csv.gz (121.24 MB) go.csv.gz (5.04 MB) interpro.csv.gz (13.61 MB)

Fasta data

Species CDS files Protein files
Arabidopsis thaliana cds.ath.tfa.gz (12.47 MB) proteome.ath.tfa.gz (6.33 MB)
Oryza sativa cds.osa.tfa.gz (21.87 MB) proteome.osa.tfa.gz (8.34 MB)
Populus trichocarpa cds.ptr.tfa.gz (12.89 MB) proteome.ptr.tfa.gz (8.17 MB)
Vitis vinifera cds.vvi.tfa.gz (9.91 MB) proteome.vvi.tfa.gz (6.29 MB)
Physcomitrella patens cds.ppa.tfa.gz (11.10 MB) proteome.ppa.tfa.gz (7.16 MB)
Chlamydomonas reinhardtii cds.cre.tfa.gz (5.44 MB) proteome.cre.tfa.gz (3.66 MB)
Ostreococcus lucimarinus cds.olu.tfa.gz (2.64 MB) proteome.olu.tfa.gz (1.68 MB)
Sorghum bicolor cds.sbi.tfa.gz (11.46 MB) proteome.sbi.tfa.gz (7.27 MB)
Carica papaya cds.cpa.tfa.gz (7.14 MB) proteome.cpa.tfa.gz (4.72 MB)
All species cds.tfa.gz (91.40 MB) proteome.tfa.gz (53.61 MB)

Intra-species block duplicates

Species Anchorpoints
Arabidopsis thaliana anchorpoints.ath.csv.gz (44.17 KB)
Oryza sativa anchorpoints.osa.csv.gz (47.02 KB)
Populus trichocarpa anchorpoints.ptr.csv.gz (173.63 KB)
Vitis vinifera anchorpoints.vvi.csv.gz (29.44 KB)
Physcomitrella patens anchorpoints.ppa.csv.gz (28.66 KB)
Chlamydomonas reinhardtii anchorpoints.cre.csv.gz (1.59 KB)
Ostreococcus lucimarinus anchorpoints.olu.csv.gz (1.42 KB)
Sorghum bicolor anchorpoints.sbi.csv.gz (64.71 KB)
Carica papaya anchorpoints.cpa.csv.gz (8.76 KB)
All species anchorpoints.csv.gz (419.62 KB)
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