Pico-PLAZA 3.0 gene overview : ENSMUSG00000102040

Gene: ENSMUSG00000102040 (Mus musculus)

Overview

Gene Identifier: ENSMUSG00000102040
Transcript Identifier: ENSMUST00000184861
Gene Type: Coding gene
Location: 6 : 129463041-129472685 : negative

Family Information

Homologous gene family: HOM03P125552
(orphan gene)
specific family

Descriptions

gene_descr: C-type lectin domain family 7, member a

Identifiers

Type	Value
Uniprot	A0A087WNK9
MGI	1861431

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0001878	IDA	Genome Project	response to yeast
GO:0001879	IDA	Genome Project	detection of yeast
GO:0002221	ISO	Genome Project	pattern recognition receptor signaling pathway
GO:0002238	IDA	Genome Project	response to molecule of fungal origin
GO:0002752	IDA	Genome Project	cell surface pattern recognition receptor signaling pathway
GO:0006910	IDA ISO	Genome Project	phagocytosis, recognition
GO:0006911	IDA	Genome Project	phagocytosis, engulfment
GO:0008037	ISO	Genome Project	cell recognition
GO:0016337	IDA	Genome Project	single organismal cell-cell adhesion
GO:0032760	IDA	Genome Project	positive regulation of tumor necrosis factor production
GO:0050766	IDA	Genome Project	positive regulation of phagocytosis

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0001846	IDA	Genome Project	opsonin binding
GO:0001872	IDA	Genome Project	(1->3)-beta-D-glucan binding
GO:0001874	IDA	Genome Project	(1->3)-beta-D-glucan receptor activity
GO:0008329	ISO	Genome Project	signaling pattern recognition receptor activity
GO:0030246	ISO	Genome Project	carbohydrate binding
GO:0030247	IDA	Genome Project	polysaccharide binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009897	IDA	Genome Project	external side of plasma membrane

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001304	C-type lectin
IPR016186	C-type lectin-like
IPR016187	C-type lectin fold

No MapMan annotations defined for this gene.