Gene: AT5G60600 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G60600
Transcript Identifier
AT5G60600.1
Gene Type
Coding gene
Location
5 : 24359447-24363274 : positive

Family Information

Homologous gene family
HOM03P002647
(35 genes in 30 species)
specific family

Descriptions

Identifiers

Type Value

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008299
ISS
Gene Ontologyisoprenoid biosynthetic process1
GO:0019288
RCA
TAS
Gene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2 3 4 5
GO:0009617
IMP
Gene Ontologyresponse to bacterium6 7
GO:0009862
IMP
RCA
Gene Ontologysystemic acquired resistance, salicylic acid mediated signaling pathway4 5 6 7
GO:0000096
RCA
Gene Ontologysulfur amino acid metabolic process4 5
GO:0000165
RCA
Gene OntologyMAPK cascade4 5
GO:0006098
RCA
Gene Ontologypentose-phosphate shunt4 5
GO:0006417
RCA
Gene Ontologyregulation of translation4 5
GO:0006546
RCA
Gene Ontologyglycine catabolic process4 5
GO:0006612
RCA
Gene Ontologyprotein targeting to membrane4 5
GO:0006636
RCA
Gene Ontologyunsaturated fatty acid biosynthetic process4 5
GO:0006655
RCA
Gene Ontologyphosphatidylglycerol biosynthetic process4 5
GO:0006733
RCA
Gene Ontologyoxidoreduction coenzyme metabolic process4 5
GO:0006766
RCA
Gene Ontologyvitamin metabolic process4 5
GO:0008652
RCA
Gene Ontologycellular amino acid biosynthetic process4 5
GO:0009072
RCA
Gene Ontologyaromatic amino acid family metabolic process4 5
GO:0009106
RCA
Gene Ontologylipoate metabolic process4 5
GO:0009108
RCA
Gene Ontologycoenzyme biosynthetic process4 5
GO:0009117
RCA
Gene Ontologynucleotide metabolic process4 5
GO:0009409
RCA
Gene Ontologyresponse to cold4 5
GO:0009416
RCA
Gene Ontologyresponse to light stimulus4 5
GO:0009595
RCA
Gene Ontologydetection of biotic stimulus4 5
GO:0009637
RCA
Gene Ontologyresponse to blue light4 5
GO:0009644
RCA
Gene Ontologyresponse to high light intensity4 5
GO:0009657
RCA
Gene Ontologyplastid organization4 5
GO:0009695
RCA
Gene Ontologyjasmonic acid biosynthetic process4 5
GO:0009697
RCA
Gene Ontologysalicylic acid biosynthetic process4 5
GO:0009744
RCA
Gene Ontologyresponse to sucrose4 5
GO:0009814
RCA
Gene Ontologydefense response, incompatible interaction4 5
GO:0009867
RCA
Gene Ontologyjasmonic acid mediated signaling pathway4 5
GO:0010114
RCA
Gene Ontologyresponse to red light4 5
GO:0010155
RCA
Gene Ontologyregulation of proton transport4 5
GO:0010200
RCA
Gene Ontologyresponse to chitin4 5
GO:0010218
RCA
Gene Ontologyresponse to far red light4 5
GO:0010304
RCA
Gene OntologyPSII associated light-harvesting complex II catabolic process4 5
GO:0010310
RCA
Gene Ontologyregulation of hydrogen peroxide metabolic process4 5
GO:0010363
RCA
Gene Ontologyregulation of plant-type hypersensitive response4 5
GO:0015994
RCA
Gene Ontologychlorophyll metabolic process4 5
GO:0015995
RCA
Gene Ontologychlorophyll biosynthetic process4 5
GO:0016117
RCA
Gene Ontologycarotenoid biosynthetic process4 5
GO:0019216
RCA
Gene Ontologyregulation of lipid metabolic process4 5
GO:0019252
RCA
Gene Ontologystarch biosynthetic process4 5
GO:0019684
RCA
Gene Ontologyphotosynthesis, light reaction4 5
GO:0019748
RCA
Gene Ontologysecondary metabolic process4 5
GO:0019760
RCA
Gene Ontologyglucosinolate metabolic process4 5
GO:0031348
RCA
Gene Ontologynegative regulation of defense response4 5
GO:0031408
RCA
Gene Ontologyoxylipin biosynthetic process4 5
GO:0042742
RCA
Gene Ontologydefense response to bacterium4 5
GO:0043900
RCA
Gene Ontologyregulation of multi-organism process4 5
GO:0044272
RCA
Gene Ontologysulfur compound biosynthetic process4 5
GO:0045893
RCA
Gene Ontologypositive regulation of transcription, DNA-templated4 5
GO:0050832
RCA
Gene Ontologydefense response to fungus4 5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046429
IDA, IGI
ISS
Gene Ontology4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity1 2 3 8 9
GO:0051539
IDA
Gene Ontology4 iron, 4 sulfur cluster binding2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus10
GO:0009507
IDA
Gene Ontologychloroplast8 9 11 12 13 14
GO:0009941
IDA
Gene Ontologychloroplast envelope15 16
GO:0009570
IDA
Gene Ontologychloroplast stroma17 18 19 20 21 22

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR0045884-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
IPR0171784-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical

No MapMan annotations defined for this gene.