Gene: AT5G20320 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G20320
Transcript Identifier
AT5G20320.1
Gene Type
Coding gene
Location
5 : 6859571-6869068 : negative

Family Information

Homologous gene family
HOM03P000904
(66 genes in 21 species)
specific family
Orthologous gene family
ORTHO03P006954
(12 genes in 9 species)
specific family

Descriptions

Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
ISS, RCA
Gene OntologyRNA processing1 2 3
GO:0010050
IMP
RCA
Gene Ontologyvegetative phase change2 3 4 5
GO:0010267
IMP
RCA
Gene Ontologyproduction of ta-siRNAs involved in RNA interference2 3 4 5 6 7
GO:0010216
IMP
Gene Ontologymaintenance of DNA methylation6 7
GO:0030422
IMP
RCA
Gene Ontologyproduction of siRNA involved in RNA interference2 3 8 9
GO:0051607
IMP
RCA
Gene Ontologydefense response to virus2 3 8 9
GO:0035196
IGI
RCA
Gene Ontologyproduction of miRNAs involved in gene silencing by miRNA2 3 10 11
GO:0009616
IGI
RCA
Gene Ontologyvirus induced gene silencing2 3 12 13
GO:0010599
IMP
Gene Ontologyproduction of lsiRNA involved in RNA interference14 15
GO:0006353
IMP
Gene OntologyDNA-templated transcription, termination16 17
GO:0000278
RCA
Gene Ontologymitotic cell cycle2 3
GO:0000398
RCA
Gene OntologymRNA splicing, via spliceosome2 3
GO:0006306
RCA
Gene OntologyDNA methylation2 3
GO:0006342
RCA
Gene Ontologychromatin silencing2 3
GO:0006355
RCA
Gene Ontologyregulation of transcription, DNA-templated2 3
GO:0007267
RCA
Gene Ontologycell-cell signaling2 3
GO:0009640
RCA
Gene Ontologyphotomorphogenesis2 3
GO:0009793
RCA
Gene Ontologyembryo development ending in seed dormancy2 3
GO:0009845
RCA
Gene Ontologyseed germination2 3
GO:0009909
RCA
Gene Ontologyregulation of flower development2 3
GO:0009933
RCA
Gene Ontologymeristem structural organization2 3
GO:0010162
RCA
Gene Ontologyseed dormancy process2 3
GO:0010182
RCA
Gene Ontologysugar mediated signaling pathway2 3
GO:0010228
RCA
Gene Ontologyvegetative to reproductive phase transition of meristem2 3
GO:0016567
RCA
Gene Ontologyprotein ubiquitination2 3
GO:0016569
RCA
Gene Ontologycovalent chromatin modification2 3
GO:0019915
RCA
Gene Ontologylipid storage2 3
GO:0031047
RCA
Gene Ontologygene silencing by RNA2 3
GO:0043687
RCA
Gene Ontologypost-translational protein modification2 3
GO:0045893
RCA
Gene Ontologypositive regulation of transcription, DNA-templated2 3
GO:0050826
RCA
Gene Ontologyresponse to freezing2 3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
ISS
Gene OntologyRNA binding1
GO:0004525
ISS
Gene Ontologyribonuclease III activity1
GO:0005515
IPI
Gene Ontologyprotein binding18 19

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus18 19 20

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000999Ribonuclease III domain
IPR001650Helicase, C-terminal
IPR003100PAZ domain
IPR005034Dicer dimerisation domain
IPR011545DEAD/DEAH box helicase domain
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR014720Double-stranded RNA-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.