Gene: AT2G13540 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G13540
Transcript Identifier
AT2G13540.1
Gene Type
Coding gene
Location
2 : 5637053-5642813 : positive

Family Information

Homologous gene family
HOM03P002784
(34 genes in 31 species)
specific family

Descriptions

Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
ISS
Gene Ontologytranslation1
GO:0009887
NAS
Gene Ontologyorgan morphogenesis2
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid3 4
GO:0048574
IMP
Gene Ontologylong-day photoperiodism, flowering5 6
GO:0000394
IMP
RCA
Gene OntologyRNA splicing, via endonucleolytic cleavage and ligation7 8 9 10
GO:0031053
IMP
Gene Ontologyprimary miRNA processing7 8
GO:0000226
RCA
Gene Ontologymicrotubule cytoskeleton organization9 10
GO:0000398
RCA
Gene OntologymRNA splicing, via spliceosome9 10
GO:0000911
RCA
Gene Ontologycytokinesis by cell plate formation9 10
GO:0006306
RCA
Gene OntologyDNA methylation9 10
GO:0006342
RCA
Gene Ontologychromatin silencing9 10
GO:0006366
RCA
Gene Ontologytranscription from RNA polymerase II promoter9 10
GO:0009086
RCA
Gene Ontologymethionine biosynthetic process9 10
GO:0009640
RCA
Gene Ontologyphotomorphogenesis9 10
GO:0009793
RCA
Gene Ontologyembryo development ending in seed dormancy9 10
GO:0009845
RCA
Gene Ontologyseed germination9 10
GO:0009909
RCA
Gene Ontologyregulation of flower development9 10
GO:0009933
RCA
Gene Ontologymeristem structural organization9 10
GO:0010162
RCA
Gene Ontologyseed dormancy process9 10
GO:0010182
RCA
Gene Ontologysugar mediated signaling pathway9 10
GO:0010228
RCA
Gene Ontologyvegetative to reproductive phase transition of meristem9 10
GO:0016567
RCA
Gene Ontologyprotein ubiquitination9 10
GO:0019915
RCA
Gene Ontologylipid storage9 10
GO:0031047
RCA
Gene Ontologygene silencing by RNA9 10
GO:0050826
RCA
Gene Ontologyresponse to freezing9 10
GO:0051567
RCA
Gene Ontologyhistone H3-K9 methylation9 10

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IDA
Gene OntologyRNA cap binding3 4
GO:0005515
IPI
Gene Ontologyprotein binding11 12

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus13 14 15
GO:0005829
RCA
Gene Ontologycytosol16 17

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003890MIF4G-like, type 3
IPR015172MIF4G-like, type 1
IPR015174MIF4G-like, type 2
IPR016021MIF4G-like domain
IPR016024Armadillo-type fold
IPR027159Nuclear cap-binding protein subunit 1

No MapMan annotations defined for this gene.