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Gene
GO/InterPro description
Binding site description/sequence
Gene family
All species
Amborella trichopoda
Arabidopsis thaliana
Asterochloris sp. Cgr/DA1pho v2.0
Aureococcus anophagefferens
Auxenochlorella protothecoides
Bathycoccus prasinos
Caenorhabditis elegans
Chlamydomonas reinhardtii
Chlorella sp NC64A
Chondrus crispus
Coccomyxa subellipsoidea C-169
Cyanidioschyzon merolae
Dictyostelium discoideum
Drosophila melanogaster
Ectocarpus siliculosus
Emiliania huxleyi
Fragilariopsis cylindrus
Galdieria sulphuraria
Helicosporidium sp.
Homo sapiens
Micromonas pusilla strain CCMP1545
Micromonas sp RCC299
Mus musculus
Nannochloropsis gaditana
Oryza sativa
Ostreococcus lucimarinus
Ostreococcus mediterraneus
Ostreococcus sp RCC809
Ostreococcus tauri
Paramecium tetraurelia
Phaeodactylum tricornutum
Physcomitrella patens
Phytophtora sojae
Picochlorum sp. SENEW3 (SE3)
Picochlorum_RCC4223
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Thalassiosira pseudonana
Volvox carteri
Pico-PLAZA 3.0
BLAST page
Program
blastn
blastp
blastx
tblastx
tblastn
Database
PLAZA Protein Sequences
PLAZA Transcript Sequences
Amborella trichopoda Genome Sequence
Arabidopsis thaliana Genome Sequence
Asterochloris sp. Cgr/DA1pho v2.0 Genome Sequence
Aureococcus anophagefferens Genome Sequence
Auxenochlorella protothecoides Genome Sequence
Bathycoccus prasinos Genome Sequence
Caenorhabditis elegans Genome Sequence
Chlamydomonas reinhardtii Genome Sequence
Chlorella sp NC64A Genome Sequence
Chondrus crispus Genome Sequence
Coccomyxa subellipsoidea C-169 Genome Sequence
Cyanidioschyzon merolae Genome Sequence
Dictyostelium discoideum Genome Sequence
Drosophila melanogaster Genome Sequence
Ectocarpus siliculosus Genome Sequence
Emiliania huxleyi Genome Sequence
Fragilariopsis cylindrus Genome Sequence
Galdieria sulphuraria Genome Sequence
Helicosporidium sp. Genome Sequence
Homo sapiens Genome Sequence
Micromonas pusilla strain CCMP1545 Genome Sequence
Micromonas sp RCC299 Genome Sequence
Mus musculus Genome Sequence
Nannochloropsis gaditana Genome Sequence
Oryza sativa Genome Sequence
Ostreococcus lucimarinus Genome Sequence
Ostreococcus mediterraneus Genome Sequence
Ostreococcus sp RCC809 Genome Sequence
Ostreococcus tauri Genome Sequence
Paramecium tetraurelia Genome Sequence
Phaeodactylum tricornutum Genome Sequence
Physcomitrella patens Genome Sequence
Phytophtora sojae Genome Sequence
Picochlorum sp. SENEW3 (SE3) Genome Sequence
Picochlorum_RCC4223 Genome Sequence
Saccharomyces cerevisiae strain S288C Genome Sequence
Schizosaccharomyces pombe Genome Sequence
Thalassiosira pseudonana Genome Sequence
Volvox carteri Genome Sequence
Enter sequence below in
FASTA
format
>AT3G28300 ATGGTGCTATCCAAAGAGAATATGTTGAAATACTCGGCACACCTTCGTGCTTACAATTCC GCATGTGGAGACCATCCAGAACTCAAATCCTTTGATTCTGAGCTTCAGCAGAAAACCTCA AATCTGATAAACTCGTTCACCTCTGATGCCAAAACTGGGTTGGTGCCACTGCCCCAACAC GCAGCATACAAGGAGTTCACCAAGCACCTAGCTGAAGTAAACCAACAGGTGTCAGACTAC ATCATTGGATATGGAGAAGTAGTGTGGGAGAACTCAACTCTGAGATCTTTGGTCGAAACC TATTTTGAAAGTGCCAAGAAGACTTTGGACATTGCCGAGAATGTAACAGAATACGTCGAT GAAGCAAAAAGGGGCGAACGTTACATTGTAGCGGCCGTGGCACAGTTTGAAAAAGACAAA GAAAATGATGTTGGCAAAAAAACGAAGAGGTATGAAAATACCTTGAGGGAGCTGAAGAAG TTTGAAGCCATGGGAAATCCTTTTGATGGCGATAAGTTCACGACTCTGTTCAAGTTGATG CACAAGGAGCAAGAATCCCTTCTGGAAAGAGTGAGGGAGACTAAGGAAAAGCTTGATGAG GAACTTAAAAATATTGAGATGGAAATAAGTAGTCGAAAGAAATGGAGTATAATTTCGAAT GTGCTTTTCATCGGTGCGTTTGTTGCTGTTGCCGTCGGATCCATGGTTCTAGTATGTACA GGCGTGGGTGCGGGCGTGGGCGTTGCAGGGCTTCTATCATTACCACTGATTGCGATAGGA TGGGTAGGCGTCCACACTATTTTAGAGAACAAGATTCAAGCTCGAGAGAAACAGGAAGAA GCTCTGAAGAAAGCGCACCGTATAGCAAACGAAATGGATAAGGGTATGGAAACCGACAAA GTAGATATGAATTCCATATCTGGAAAAGTCCACGCGCTAAAAAGCAAGATCACGTCTATG TTGAATGCTGTGAAGGATGCTACTGAGGATGGAGCAAATGAGGTGGACACGAAACAAGTA ATGGAAACCCTTACGGGGGACGTGGTGGAATTAACAGAGGATATCAAAGCAGTTGGTGAT GATGTGGCAAAATATAGCAAAATGATCGAAGAGACGAGTTATCACGTTTTGCAAAAGATC ACTGGTTCTGGAAAATAA
Advanced options
Filter low complexity
On
Off
Expect
1e-10
1e-5
0.001
0.1
1
10
Matrix
PAM30
PAM70
BLOSUM45
BLOSUM62
BLOSUM80
Perform gapped alignment
Query Genetic codes - (T)Blastx only
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Output format
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
XML BLAST output
tabular
tabular with comment lines
Text ASN.1
Binary ASN.1
Comma-seperated values
BLAST archive format (ASN.1)
Descriptions
0
1
10
50
100
250
500
Alignments
0
1
10
50
100
250
500
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench