Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
YLR213C	Saccharomyces cerevisiae strain S288C	0.0	881	423	100.00
YEL040W	Saccharomyces cerevisiae strain S288C	3e-67	227	355	37.18
YGR189C	Saccharomyces cerevisiae strain S288C	2e-28	120	205	35.12
AT4G30290	Arabidopsis thaliana	1e-16	83.2	207	35.27
PP00024G01140	Physcomitrella patens	3e-16	84.7	254	27.56
AT4G30270	Arabidopsis thaliana	1e-15	80.5	258	29.07
OS08G13920	Oryza sativa	1e-15	80.5	204	31.86
AT5G57560	Arabidopsis thaliana	2e-15	80.1	183	33.88
AT4G25820	Arabidopsis thaliana	2e-15	80.1	208	31.73
AT4G25810	Arabidopsis thaliana	3e-15	79.3	183	33.88
AT5G48070	Arabidopsis thaliana	1e-14	77.4	190	34.74
AT1G65310	Arabidopsis thaliana	3e-14	76.6	190	35.79
AT4G30280	Arabidopsis thaliana	3e-14	76.6	168	38.10
AT4G14130	Arabidopsis thaliana	3e-14	76.6	206	30.58
AT2G18800	Arabidopsis thaliana	4e-14	76.6	188	31.91
ATR_00062G00050	Amborella trichopoda	4e-14	75.9	207	31.88
ATR_00062G00020	Amborella trichopoda	1e-13	74.7	207	32.85
AT5G57540	Arabidopsis thaliana	2e-13	74.3	199	30.15
AT5G65730	Arabidopsis thaliana	2e-13	73.9	207	30.43
AT5G57550	Arabidopsis thaliana	3e-13	73.6	207	30.92
ATR_00019G03570	Amborella trichopoda	3e-13	73.6	206	32.52
AT5G57530	Arabidopsis thaliana	9e-13	72.0	196	30.10
AT4G13080	Arabidopsis thaliana	9e-13	72.0	172	31.98
ATR_00024G00080	Amborella trichopoda	1e-12	72.0	165	30.30
OS02G17880	Oryza sativa	2e-12	71.6	177	31.64
PP00353G00180	Physcomitrella patens	2e-12	70.5	138	33.33
AT4G13090	Arabidopsis thaliana	2e-12	71.2	203	32.02
OS06G48160	Oryza sativa	3e-12	70.9	178	29.78
AT3G25050	Arabidopsis thaliana	3e-12	70.5	169	33.73
OS04G51520	Oryza sativa	3e-12	71.2	172	33.14
PP00037G01500	Physcomitrella patens	3e-12	72.4	178	29.78
OS06G48200	Oryza sativa	4e-12	70.5	194	30.41
OS03G63760	Oryza sativa	4e-12	71.2	245	24.08
OS06G48180	Oryza sativa	6e-12	69.7	199	28.14
PP00195G00150	Physcomitrella patens	6e-12	70.1	199	30.15
ATR_00026G01160	Amborella trichopoda	6e-12	69.7	201	29.35
PP00309G00230	Physcomitrella patens	8e-12	69.3	204	31.86
AT4G37800	Arabidopsis thaliana	9e-12	69.3	200	28.00
ATR_00019G03550	Amborella trichopoda	2e-11	68.2	209	30.62
AT3G23730	Arabidopsis thaliana	2e-11	68.2	198	29.29
ATR_00065G01770	Amborella trichopoda	4e-11	67.4	217	29.49
OS06G13040	Oryza sativa	5e-11	67.4	207	29.95
AT4G18990	Arabidopsis thaliana	5e-11	67.8	180	29.44
OS10G02770	Oryza sativa	6e-11	67.4	217	26.73
ATR_00019G03590	Amborella trichopoda	8e-11	66.6	226	27.43
OS03G13570	Oryza sativa	9e-11	67.0	206	27.18
OS06G48170	Oryza sativa	1e-10	66.2	141	33.33
ATR_00069G00950	Amborella trichopoda	2e-10	64.7	170	28.24
ATR_00065G01750	Amborella trichopoda	2e-10	65.5	207	29.95
OS10G42670	Oryza sativa	3e-10	65.1	155	30.32
PP00618G00010	Physcomitrella patens	6e-10	64.7	174	31.03
OS02G46910	Oryza sativa	7e-10	64.3	163	28.22
AT4G28850	Arabidopsis thaliana	1e-09	63.2	180	28.33
AT1G14720	Arabidopsis thaliana	1e-09	63.2	161	31.68
AT2G06850	Arabidopsis thaliana	1e-09	62.8	199	31.66
OS09G23220	Oryza sativa	2e-09	62.8	190	27.37
ATR_00019G03580	Amborella trichopoda	2e-09	60.5	113	35.40
OS06G22919	Oryza sativa	2e-09	62.4	183	27.87
OS10G39840	Oryza sativa	2e-09	62.4	124	37.90
AT2G01850	Arabidopsis thaliana	3e-09	62.4	163	30.67
AT1G10550	Arabidopsis thaliana	3e-09	62.0	157	29.30
PP00168G00160	Physcomitrella patens	4e-09	61.6	231	29.00
ATR_00013G00910	Amborella trichopoda	4e-09	60.1	136	30.15
AT1G32170	Arabidopsis thaliana	5e-09	61.6	151	29.80
PP00272G00150	Physcomitrella patens	5e-09	60.8	194	26.80
ATR_00026G01130	Amborella trichopoda	6e-09	59.3	167	31.14
OS07G29750	Oryza sativa	8e-09	60.5	163	33.13
PP00309G00200	Physcomitrella patens	9e-09	59.3	170	28.82
ATR_00082G00420	Amborella trichopoda	1e-08	60.1	152	31.58
OS02G17900	Oryza sativa	1e-08	59.7	230	25.65
OS08G13980	Oryza sativa	2e-08	59.7	248	27.02
PP00026G00650	Physcomitrella patens	2e-08	59.7	188	27.13
ATR_00048G00580	Amborella trichopoda	2e-08	59.3	175	28.00
PP00309G00220	Physcomitrella patens	2e-08	59.3	126	33.33
OS11G33270	Oryza sativa	3e-08	58.9	154	35.71
PP00004G00260	Physcomitrella patens	4e-08	58.5	172	29.65
ATR_00004G02430	Amborella trichopoda	5e-08	58.2	221	27.15
ATR_00026G01110	Amborella trichopoda	7e-08	56.6	152	32.24
ATR_00026G01070	Amborella trichopoda	1e-07	57.0	170	30.00
PP00005G00910	Physcomitrella patens	1e-07	57.4	218	27.98
OS02G03550	Oryza sativa	1e-07	57.0	178	25.84
ATR_00109G01360	Amborella trichopoda	1e-07	55.5	134	32.84
ATR_00016G02940	Amborella trichopoda	1e-07	56.6	196	30.10
OS03G01800	Oryza sativa	2e-07	56.6	114	36.84
AT3G44990	Arabidopsis thaliana	5e-07	55.1	156	28.21
PP00074G00080	Physcomitrella patens	5e-07	55.5	169	29.59
AT1G11545	Arabidopsis thaliana	6e-07	54.7	181	30.39
PP00309G00140	Physcomitrella patens	7e-07	54.7	119	33.61
AT4G03210	Arabidopsis thaliana	2e-06	53.1	190	27.37
PP00122G00290	Physcomitrella patens	2e-06	53.1	235	22.98
PP00081G01240	Physcomitrella patens	3e-06	52.8	167	26.35
PP00486G00100	Physcomitrella patens	3e-06	52.4	141	31.91
PP00486G00080	Physcomitrella patens	3e-06	52.4	141	31.91
OS08G14200	Oryza sativa	4e-06	52.4	214	24.77
PP00089G00910	Physcomitrella patens	4e-06	52.0	156	29.49
AT2G36870	Arabidopsis thaliana	5e-06	52.0	152	29.61
OS02G57770	Oryza sativa	6e-06	52.0	153	30.07
OS04G51460	Oryza sativa	1e-05	50.8	214	25.23

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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