Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
RCC4223.04g05780	Picochlorum_RCC4223	0.0	1327	645	100.00
PI00G68540	Picochlorum sp. SENEW3 (SE3)	0.0	1172	614	92.02
CNC64A_037G00370	Chlorella sp NC64A	0.0	647	603	55.72
AC00G81700	Asterochloris sp. Cgr-DA1pho v2.0	0.0	614	573	51.66
VC00G100730	Volvox carteri	0.0	609	587	51.62
CR12G06760	Chlamydomonas reinhardtii	0.0	603	596	49.66
CV00G70600	Coccomyxa subellipsoidea C-169	0.0	600	592	50.84
ES0003G00250	Ectocarpus siliculosus	4e-167	498	582	46.22
FC007G06160	Fragilariopsis cylindrus	4e-147	446	556	44.24
AA0010G01840	Aureococcus anophagefferens	4e-137	420	565	41.59
emh310600	Emiliania huxleyi	3e-136	419	579	40.24
PTI_02G04580	Phaeodactylum tricornutum	2e-135	417	576	41.84
emh197990	Emiliania huxleyi	3e-132	410	622	40.35
emh706340	Emiliania huxleyi	3e-132	410	622	40.35
Naga_100099g13	Nannochloropsis gaditana	1e-124	405	564	42.20
ccr175760	Chondrus crispus	2e-117	371	566	39.22
CM16G00880	Cyanidioschyzon merolae	2e-110	353	606	38.94
phs197510	Phytophtora sojae	1e-100	326	586	36.01
phs198930	Phytophtora sojae	2e-96	316	611	35.02
phs198830	Phytophtora sojae	1e-95	312	568	35.39
ENSG00000016391	Homo sapiens	1e-88	294	593	32.55
WBGene00007917	Caenorhabditis elegans	1e-82	278	587	32.20
FBgn0001112	Drosophila melanogaster	1e-75	260	585	32.31
FBgn0030598	Drosophila melanogaster	8e-72	250	584	33.22
FBgn0030592	Drosophila melanogaster	2e-70	248	591	32.15
FBgn0030590	Drosophila melanogaster	3e-67	239	588	31.63
TP08G04640	Thalassiosira pseudonana	1e-66	234	528	31.63
Naga_100004g95	Nannochloropsis gaditana	4e-66	234	608	32.07
FBgn0030587	Drosophila melanogaster	9e-66	233	589	31.58
FBgn0266435	Drosophila melanogaster	5e-65	231	593	30.86
FBgn0039415	Drosophila melanogaster	3e-63	226	583	31.39
FBgn0030594	Drosophila melanogaster	3e-63	227	580	30.52
emh610010	Emiliania huxleyi	8e-62	223	623	31.62
FBgn0030588	Drosophila melanogaster	2e-60	218	587	32.03
FBgn0030586	Drosophila melanogaster	3e-59	215	591	28.93
emh381540	Emiliania huxleyi	4e-59	215	624	30.45
FBgn0030593	Drosophila melanogaster	8e-58	211	583	30.36
AA0058G00090	Aureococcus anophagefferens	2e-57	216	569	32.51
FBgn0030589	Drosophila melanogaster	1e-53	199	583	31.73
gsu91210	Galdieria sulphuraria	3e-50	182	304	37.50
FBgn0030596	Drosophila melanogaster	5e-48	182	313	36.42
gsu91190	Galdieria sulphuraria	6e-47	172	194	45.88
ES0089G00140	Ectocarpus siliculosus	7e-44	171	666	26.13
FC027G00320	Fragilariopsis cylindrus	8e-42	163	600	27.50
DDB_G0287229	Dictyostelium discoideum	2e-41	162	586	26.28
Naga_100105g4	Nannochloropsis gaditana	4e-40	160	342	33.92
AA0005G05800	Aureococcus anophagefferens	2e-39	160	590	28.64
phs172930	Phytophtora sojae	6e-36	145	408	28.68
PTI_02G04520	Phaeodactylum tricornutum	9e-36	145	583	25.04
FBgn0037896	Drosophila melanogaster	4e-35	144	595	26.22
ES0475G00020	Ectocarpus siliculosus	9e-35	143	604	27.81
Naga_100225g10	Nannochloropsis gaditana	2e-33	139	597	26.47
FBgn0030597	Drosophila melanogaster	5e-33	139	606	26.07
Naga_100040g2	Nannochloropsis gaditana	1e-32	135	496	26.81
phs157680	Phytophtora sojae	7e-31	132	333	30.33
PP00078G00400	Physcomitrella patens	2e-30	130	586	27.99
PTI_10G02300	Phaeodactylum tricornutum	9e-28	123	682	23.90
ccr36220	Chondrus crispus	2e-25	115	603	26.04
ATR_00036G00190	Amborella trichopoda	6e-25	113	616	25.32
OS08G31030	Oryza sativa	5e-24	110	594	24.92
ATR_00069G01340	Amborella trichopoda	9e-24	110	593	24.45
OS09G19930	Oryza sativa	4e-23	107	591	24.37
AT1G14190	Arabidopsis thaliana	7e-23	106	580	24.31
OS10G38050	Oryza sativa	8e-23	107	586	23.55
AA0002G03300	Aureococcus anophagefferens	8e-23	108	625	23.36
ATR_00025G03910	Amborella trichopoda	1e-22	106	341	31.67
AA0005G05600	Aureococcus anophagefferens	3e-22	99.0	141	41.13
OS02G45530	Oryza sativa	3e-22	105	623	24.56
OS03G02700	Oryza sativa	3e-21	102	583	23.50
PP00078G00390	Physcomitrella patens	4e-20	97.8	324	30.25
AA0058G00110	Aureococcus anophagefferens	1e-19	94.0	188	32.98
emh92480	Emiliania huxleyi	2e-19	92.4	203	35.96
AT1G72970	Arabidopsis thaliana	3e-19	95.5	582	24.05
AT1G14185	Arabidopsis thaliana	4e-19	95.1	326	29.45
ccr51120	Chondrus crispus	1e-18	94.0	335	28.06
OS04G48400	Oryza sativa	6e-18	91.7	597	24.46
AT1G12570	Arabidopsis thaliana	3e-17	89.4	323	30.34
emh222900	Emiliania huxleyi	1e-16	87.4	321	27.41
FC014G01320	Fragilariopsis cylindrus	1e-16	87.4	614	24.10
emh92500	Emiliania huxleyi	1e-16	85.9	327	25.69
AT5G51950	Arabidopsis thaliana	2e-16	87.0	325	28.31
emh223740	Emiliania huxleyi	6e-16	82.0	177	33.90
PP00003G02580	Physcomitrella patens	8e-16	85.1	605	23.47
phs36230	Phytophtora sojae	2e-15	84.3	577	24.61
OS06G44540	Oryza sativa	4e-15	82.8	636	23.43
AT1G73050	Arabidopsis thaliana	3e-14	79.7	306	28.43
AT3G56060	Arabidopsis thaliana	1e-13	78.2	321	27.41
PP00085G00680	Physcomitrella patens	6e-13	75.9	312	28.21
RCC4223.08g04290	Picochlorum_RCC4223	3e-12	73.9	367	24.80
PI00G66040	Picochlorum sp. SENEW3 (SE3)	6e-12	72.8	364	25.55
emh416920	Emiliania huxleyi	7e-12	72.0	157	34.39
AT5G51930	Arabidopsis thaliana	2e-11	71.2	311	27.65
phs176300	Phytophtora sojae	1e-07	59.3	319	26.65

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment