Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: PP00389G00030

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00389G00030	Physcomitrella patens	0.0	1298	630	100.00
PP00302G00070	Physcomitrella patens	0.0	728	582	59.62
AT3G54140	Arabidopsis thaliana	0.0	543	569	45.17
PP00014G00620	Physcomitrella patens	1e-180	533	572	45.45
PP00298G00140	Physcomitrella patens	3e-180	531	570	45.61
ATR_00036G01320	Amborella trichopoda	1e-179	530	570	46.49
OS03G51050	Oryza sativa	1e-178	527	559	46.87
ATR_00067G01870	Amborella trichopoda	2e-178	527	570	46.67
AT2G02040	Arabidopsis thaliana	7e-177	522	561	44.92
AT5G01180	Arabidopsis thaliana	4e-176	520	576	43.75
ATR_00256G00010	Amborella trichopoda	1e-175	520	564	47.70
ATR_00067G01930	Amborella trichopoda	2e-174	516	588	45.07
OS03G13240	Oryza sativa	9e-172	509	573	44.50
ATR_00029G03220	Amborella trichopoda	2e-171	509	561	44.21
PP00246G00590	Physcomitrella patens	5e-171	508	606	44.06
ATR_00029G03190	Amborella trichopoda	4e-170	504	561	44.39
ATR_00024G00950	Amborella trichopoda	6e-170	504	560	45.89
AT5G46040	Arabidopsis thaliana	4e-169	502	587	44.29
PP00114G00050	Physcomitrella patens	3e-166	496	617	41.00
OS01G04950	Oryza sativa	1e-165	493	566	43.64
AT5G46050	Arabidopsis thaliana	1e-161	483	573	43.80
AT2G40460	Arabidopsis thaliana	3e-161	482	563	44.76
OS03G04570	Oryza sativa	2e-160	481	579	43.70
ATR_00024G00980	Amborella trichopoda	1e-159	478	594	43.77
OS03G13250	Oryza sativa	3e-159	478	566	42.05
PP00133G00360	Physcomitrella patens	1e-157	474	628	41.08
AT1G62200	Arabidopsis thaliana	1e-157	473	570	41.93
OS10G33210	Oryza sativa	2e-157	473	575	43.65
OS07G01070	Oryza sativa	8e-156	468	558	42.65
OS10G33170	Oryza sativa	2e-155	468	584	43.66
PP00113G00080	Physcomitrella patens	2e-154	467	594	41.58
PP00173G00410	Physcomitrella patens	5e-150	453	574	40.07
AT3G53960	Arabidopsis thaliana	1e-149	452	559	41.68
AT2G02020	Arabidopsis thaliana	4e-149	449	555	41.80
ATR_00054G00270	Amborella trichopoda	5e-148	448	558	43.91
ATR_00165G00370	Amborella trichopoda	8e-148	448	563	43.52
PP00116G00100	Physcomitrella patens	2e-147	448	579	41.45
ATR_00104G00420	Amborella trichopoda	4e-147	446	548	42.15
OS03G60850	Oryza sativa	1e-145	442	582	40.72
AT2G37900	Arabidopsis thaliana	2e-145	441	558	41.22
ATR_00024G00990	Amborella trichopoda	8e-145	439	560	42.86
ATR_00186G00140	Amborella trichopoda	5e-144	437	556	41.37
ATR_00120G00460	Amborella trichopoda	8e-143	435	545	39.82
PP00434G00170	Physcomitrella patens	2e-142	435	579	39.72
PP00071G00970	Physcomitrella patens	2e-140	433	572	40.21
PP00171G00030	Physcomitrella patens	7e-140	426	534	41.20
AT1G12110	Arabidopsis thaliana	1e-139	427	579	40.59
PP00075G00110	Physcomitrella patens	1e-139	427	553	41.23
ATR_00086G00940	Amborella trichopoda	1e-139	426	569	40.60
OS08G05910	Oryza sativa	1e-138	424	568	41.20
PP00400G00020	Physcomitrella patens	6e-138	421	552	38.22
OS10G02220	Oryza sativa	1e-137	421	562	38.61
OS03G13274	Oryza sativa	2e-137	421	574	38.68
OS10G40600	Oryza sativa	5e-137	420	580	40.69
AT3G54450	Arabidopsis thaliana	6e-137	418	568	38.56
OS10G02210	Oryza sativa	1e-135	416	540	40.56
ATR_00019G00590	Amborella trichopoda	1e-135	415	553	43.40
OS10G02260	Oryza sativa	8e-135	414	570	38.07
OS01G67630	Oryza sativa	2e-133	409	579	38.34
OS10G22560	Oryza sativa	4e-133	409	560	39.29
ATR_00067G01530	Amborella trichopoda	3e-132	404	467	44.54
ATR_00002G04270	Amborella trichopoda	3e-130	402	577	36.40
AT2G26690	Arabidopsis thaliana	4e-130	402	566	39.93
AT1G68570	Arabidopsis thaliana	7e-130	402	557	40.22
AT1G22540	Arabidopsis thaliana	6e-129	398	556	39.75
OS05G34010	Oryza sativa	2e-127	395	557	38.42
OS10G02240	Oryza sativa	3e-127	394	577	38.99
OS01G37590	Oryza sativa	5e-127	394	589	40.41
PP00298G00190	Physcomitrella patens	3e-125	390	580	38.45
AT1G22550	Arabidopsis thaliana	1e-124	387	574	37.46
CV00G86190	Coccomyxa subellipsoidea C-169	2e-124	388	542	41.70
OS03G01290	Oryza sativa	3e-124	387	559	39.53
ATR_00156G00390	Amborella trichopoda	6e-124	386	555	39.82
OS02G48570	Oryza sativa	6e-124	386	582	36.94
AT1G72125	Arabidopsis thaliana	2e-123	384	558	37.81
AT1G72140	Arabidopsis thaliana	2e-123	384	577	36.57
AT1G72120	Arabidopsis thaliana	3e-122	380	557	38.78
OS01G65110	Oryza sativa	1e-121	379	555	36.40
AT1G32450	Arabidopsis thaliana	2e-121	380	578	35.99
OS01G65100	Oryza sativa	5e-121	377	559	37.75
ATR_00149G00300	Amborella trichopoda	3e-120	377	559	35.60
AT1G69870	Arabidopsis thaliana	5e-120	377	549	35.15
OS10G02100	Oryza sativa	4e-119	373	590	37.63
AT1G59740	Arabidopsis thaliana	5e-118	371	578	33.74
OS01G68510	Oryza sativa	1e-116	367	569	36.03
OS10G02080	Oryza sativa	6e-116	363	534	38.39
OS07G41250	Oryza sativa	6e-116	368	556	37.05
AT1G22570	Arabidopsis thaliana	2e-115	363	573	38.22
OS10G02340	Oryza sativa	2e-115	363	543	41.25
OS06G49250	Oryza sativa	3e-115	362	532	39.85
AP00G32420	Auxenochlorella protothecoides	3e-115	365	533	37.15
OS06G49220	Oryza sativa	1e-114	361	560	37.32
AT3G21670	Arabidopsis thaliana	2e-114	362	565	37.88
OS05G34030	Oryza sativa	4e-114	361	559	37.92
OS04G50940	Oryza sativa	3e-113	358	554	35.38
OS03G48180	Oryza sativa	4e-113	358	548	34.49
OS06G15370	Oryza sativa	4e-113	358	571	38.18
AT5G13400	Arabidopsis thaliana	1e-112	358	578	34.60
PP00143G00670	Physcomitrella patens	4e-112	361	608	35.53
OS05G35650	Oryza sativa	7e-112	354	572	38.11
ATR_00002G04300	Amborella trichopoda	8e-112	353	562	34.70
PI00G42080	Picochlorum sp. SENEW3 (SE3)	1e-111	358	653	32.62
ATR_00016G00080	Amborella trichopoda	2e-111	356	647	34.93
AT1G33440	Arabidopsis thaliana	5e-111	353	564	36.52
OS10G42870	Oryza sativa	5e-111	352	544	35.85
OS05G33960	Oryza sativa	1e-110	352	582	36.25
CNC64A_010G00890	Chlorella sp NC64A	2e-110	350	544	36.76
AT1G72130	Arabidopsis thaliana	1e-109	347	549	35.88
HE0000G52310	Helicosporidium sp.	2e-109	349	548	35.58
ATR_00099G01020	Amborella trichopoda	3e-109	348	586	34.64
PP00072G00360	Physcomitrella patens	5e-109	349	580	36.38
OS10G42900	Oryza sativa	9e-109	346	551	38.11
AT1G69850	Arabidopsis thaliana	5e-108	344	585	34.19
AT1G27040	Arabidopsis thaliana	2e-107	342	564	34.04
OS02G46460	Oryza sativa	4e-107	343	571	34.15
OS04G50950	Oryza sativa	5e-107	342	551	35.39
AT4G21680	Arabidopsis thaliana	2e-106	340	562	33.27
OS05G27010	Oryza sativa	1e-105	336	465	43.01
OS12G44110	Oryza sativa	2e-105	338	565	35.75
AT5G19640	Arabidopsis thaliana	6e-105	337	553	33.63
ATR_00078G00550	Amborella trichopoda	5e-104	334	585	33.68
OS04G39030	Oryza sativa	2e-103	333	563	38.90
ATR_00169G00300	Amborella trichopoda	1e-102	329	542	35.79
ATR_00022G01870	Amborella trichopoda	9e-102	328	580	36.21
AC00G76010	Asterochloris sp. Cgr-DA1pho v2.0	1e-101	329	570	34.39
AT5G14940	Arabidopsis thaliana	2e-101	326	564	32.80
RCC4223.05g02060	Picochlorum_RCC4223	5e-101	329	574	34.15
OS04G36040	Oryza sativa	1e-100	326	577	34.84
AT1G18880	Arabidopsis thaliana	1e-100	325	561	31.91
OS01G65210	Oryza sativa	1e-100	328	566	34.63
AP00G52100	Auxenochlorella protothecoides	2e-100	324	520	36.35
VC00G30280	Volvox carteri	5e-99	323	567	36.68
CV00G87420	Coccomyxa subellipsoidea C-169	8e-99	321	577	35.88
OS06G38294	Oryza sativa	1e-98	320	572	34.44
OS06G21900	Oryza sativa	3e-98	320	566	35.69
AT1G27080	Arabidopsis thaliana	5e-98	318	568	33.10
AT5G62680	Arabidopsis thaliana	5e-98	319	590	32.03
OS01G54515	Oryza sativa	9e-98	316	535	33.64
OS01G01360	Oryza sativa	1e-97	318	571	38.00
AT1G52190	Arabidopsis thaliana	2e-97	317	550	32.91
AT3G16180	Arabidopsis thaliana	3e-97	316	554	34.48
OS04G50930	Oryza sativa	3e-97	317	581	34.42
OS02G47090	Oryza sativa	7e-97	315	550	35.64
AT3G47960	Arabidopsis thaliana	7e-97	317	550	32.18
PI00G49640	Picochlorum sp. SENEW3 (SE3)	9e-97	316	550	36.73
OS04G56560	Oryza sativa	2e-96	315	596	33.72
OS12G44100	Oryza sativa	2e-96	314	573	33.51
AT5G28470	Arabidopsis thaliana	2e-95	311	539	30.80
ATR_00109G00940	Amborella trichopoda	2e-95	311	546	33.70
RCC4223.18g01160	Picochlorum_RCC4223	3e-95	312	550	36.36
ATR_00088G00540	Amborella trichopoda	6e-95	307	467	36.83
OS06G49240	Oryza sativa	1e-94	305	440	39.77
OS05G35594	Oryza sativa	3e-94	306	544	34.93
HE0000G08520	Helicosporidium sp.	4e-94	310	529	34.03
AT1G69860	Arabidopsis thaliana	2e-93	305	547	33.27
AT5G62730	Arabidopsis thaliana	5e-93	305	571	32.05
OS11G18044	Oryza sativa	5e-91	300	575	32.87
AT3G45650	Arabidopsis thaliana	2e-90	298	575	31.30
ATR_00089G01050	Amborella trichopoda	2e-90	297	573	29.49
OS11G23890	Oryza sativa	3e-90	300	562	32.56
ATR_00055G01460	Amborella trichopoda	3e-89	293	522	32.76
AP00G65500	Auxenochlorella protothecoides	5e-89	295	575	34.61
OS04G59480	Oryza sativa	2e-88	291	556	33.63
OS11G17970	Oryza sativa	3e-87	290	581	32.01
AT3G01350	Arabidopsis thaliana	3e-86	286	560	31.79
ATR_00036G01380	Amborella trichopoda	2e-85	281	442	32.81
ATR_00118G00290	Amborella trichopoda	3e-85	279	407	37.59
AT3G45680	Arabidopsis thaliana	4e-85	283	569	30.76
AT3G45660	Arabidopsis thaliana	5e-84	280	560	30.18
OS06G13210	Oryza sativa	6e-83	277	552	32.61
OS01G65150	Oryza sativa	3e-82	275	553	32.91
AT3G45710	Arabidopsis thaliana	3e-82	276	562	29.89
OS12G12934	Oryza sativa	1e-81	275	568	32.57
OS04G41450	Oryza sativa	1e-81	274	559	30.05
AT3G25260	Arabidopsis thaliana	4e-81	271	539	31.35
OS11G12740	Oryza sativa	7e-81	274	602	33.22
OS01G55600	Oryza sativa	1e-80	272	568	33.45
AT3G45720	Arabidopsis thaliana	9e-80	269	553	30.38
OS04G41400	Oryza sativa	2e-79	269	571	30.82
AT3G25280	Arabidopsis thaliana	2e-79	267	547	29.98
AT3G45700	Arabidopsis thaliana	9e-79	266	548	30.47
ATR_00045G01590	Amborella trichopoda	1e-75	256	470	34.26
OS01G65169	Oryza sativa	1e-74	255	562	32.38
OS06G13200	Oryza sativa	2e-74	254	545	32.66
OS05G27304	Oryza sativa	1e-73	253	567	30.16
OS01G55610	Oryza sativa	3e-72	249	565	31.86
AT3G45690	Arabidopsis thaliana	5e-71	244	548	29.38
ATR_00118G00320	Amborella trichopoda	1e-69	235	261	47.51
OS10G05780	Oryza sativa	4e-69	240	558	32.26
ATR_00112G00370	Amborella trichopoda	1e-66	228	345	35.94
OS11G18110	Oryza sativa	2e-66	234	518	29.15
OS01G67640	Oryza sativa	8e-62	221	624	29.01
ATR_00118G00300	Amborella trichopoda	2e-59	205	255	43.53
ATR_00070G00600	Amborella trichopoda	4e-59	206	296	37.16
OS01G65140	Oryza sativa	2e-57	203	255	41.18
ATR_00162G00100	Amborella trichopoda	4e-56	197	277	38.27
PP00147G00390	Physcomitrella patens	1e-54	193	216	40.74
PP00004G00090	Physcomitrella patens	4e-54	192	278	40.29
AT5G11570	Arabidopsis thaliana	9e-54	196	537	27.75
OS08G41590	Oryza sativa	8e-51	186	429	30.77
OS01G65190	Oryza sativa	9e-47	179	278	35.61
CR04G03930	Chlamydomonas reinhardtii	2e-46	178	232	40.52
OS01G65200	Oryza sativa	4e-45	169	357	33.61
ATR_00070G00590	Amborella trichopoda	5e-45	165	226	42.48
ATR_00023G02330	Amborella trichopoda	8e-45	166	243	39.51
AT2G38100	Arabidopsis thaliana	2e-44	170	518	28.38
ENSG00000139370	Homo sapiens	2e-43	168	561	28.16
OS04G41410	Oryza sativa	8e-43	165	459	26.14
HE0000G42610	Helicosporidium sp.	2e-42	157	207	41.06
CNC64A_007G03700	Chlorella sp NC64A	6e-41	159	208	39.90
ATR_00024G00970	Amborella trichopoda	1e-40	152	266	35.34
ATR_00002G04290	Amborella trichopoda	1e-38	150	345	28.70
OS01G65120	Oryza sativa	7e-38	150	225	40.00
OS05G34000	Oryza sativa	2e-37	150	287	34.15
ATR_00023G02340	Amborella trichopoda	1e-36	143	276	29.71
ENSMUSG00000029416	Mus musculus	2e-36	147	563	27.00
PP00009G01060	Physcomitrella patens	5e-36	145	539	25.05
phs97310	Phytophtora sojae	9e-36	145	563	25.58
Naga_100030g44	Nannochloropsis gaditana	1e-35	146	442	29.41
ATR_00054G00250	Amborella trichopoda	1e-35	136	204	37.75
PP00069G00140	Physcomitrella patens	2e-32	135	510	23.92
ENSMUSG00000022899	Mus musculus	8e-32	135	433	27.48
ATR_00020G00660	Amborella trichopoda	3e-30	124	242	32.64
ATR_00118G00280	Amborella trichopoda	7e-30	121	148	46.62
DDB_G0272550	Dictyostelium discoideum	8e-30	127	461	24.51
AA0009G01620	Aureococcus anophagefferens	9e-30	126	520	25.96
ATR_00067G01540	Amborella trichopoda	2e-28	116	172	38.37
OS05G27050	Oryza sativa	2e-28	115	119	44.54
ENSMUSG00000025557	Mus musculus	5e-28	124	427	24.59
FBgn0028491	Drosophila melanogaster	5e-28	124	411	24.82
phs319720	Phytophtora sojae	6e-28	123	654	23.85
WBGene00003878	Caenorhabditis elegans	4e-27	120	416	27.64
phs89090	Phytophtora sojae	2e-26	118	578	24.57
ATR_00024G00960	Amborella trichopoda	2e-26	110	118	45.76
HE0000G35580	Helicosporidium sp.	3e-26	113	250	31.60
phs42450	Phytophtora sojae	3e-25	114	570	25.61
FC006G04490	Fragilariopsis cylindrus	1e-24	112	528	22.35
FBgn0265575	Drosophila melanogaster	1e-24	113	379	24.54
ENSG00000163406	Homo sapiens	2e-24	112	398	24.62
WBGene00003877	Caenorhabditis elegans	9e-23	107	432	23.84
ATR_00162G00110	Amborella trichopoda	5e-22	99.0	141	34.04
PP00065G01500	Physcomitrella patens	1e-21	102	425	26.12
ES0453G00050	Ectocarpus siliculosus	1e-21	102	281	29.54
OS03G17770	Oryza sativa	4e-21	99.4	130	45.38
WBGene00003876	Caenorhabditis elegans	6e-21	101	435	24.60
FC056G00710	Fragilariopsis cylindrus	5e-20	98.2	529	21.17
ENSG00000188991	Homo sapiens	3e-18	92.4	526	21.10
OS06G49230	Oryza sativa	5e-18	86.7	137	32.85
DDB_G0267874	Dictyostelium discoideum	3e-17	89.7	553	21.16
SPBC13A2.04c	Schizosaccharomyces pombe	5e-17	88.6	533	25.14
phs07850	Phytophtora sojae	7e-17	88.2	566	23.50
DDB_G0272468	Dictyostelium discoideum	2e-16	87.0	531	22.03
OS02G52060	Oryza sativa	5e-15	79.7	95	42.11
ATR_00109G00960	Amborella trichopoda	1e-14	77.0	149	28.86
YKR093W	Saccharomyces cerevisiae strain S288C	2e-14	80.5	488	22.34
phs42430	Phytophtora sojae	4e-13	75.9	446	25.11
phs07890	Phytophtora sojae	5e-13	72.8	165	32.12
AA0005G00440	Aureococcus anophagefferens	9e-13	74.3	204	28.92
ATR_00088G00530	Amborella trichopoda	3e-12	68.9	93	39.78
OS08G41600	Oryza sativa	3e-12	68.9	82	42.68
OS12G13790	Oryza sativa	4e-12	72.8	185	35.14
ATR_00162G00120	Amborella trichopoda	5e-12	68.9	101	34.65
TP04G00530	Thalassiosira pseudonana	5e-12	73.2	224	29.91
OS07G21960	Oryza sativa	2e-11	69.3	283	27.92
gsu136190	Galdieria sulphuraria	3e-11	69.7	157	29.30
FC015G01430	Fragilariopsis cylindrus	3e-11	70.1	531	22.03
OS02G31980	Oryza sativa	4e-11	65.5	74	44.59
PTI_12G03880	Phaeodactylum tricornutum	6e-11	69.7	563	19.36
PTI_12G02910	Phaeodactylum tricornutum	7e-11	69.3	249	26.91
FC011G01070	Fragilariopsis cylindrus	3e-09	63.9	492	21.75
ATR_00020G00670	Amborella trichopoda	3e-09	60.8	108	39.81
OS04G34640	Oryza sativa	1e-08	60.1	95	34.74
ATR_00089G01060	Amborella trichopoda	4e-08	56.6	82	35.37
TP08G01040	Thalassiosira pseudonana	1e-07	58.9	462	22.29
FBgn0037730	Drosophila melanogaster	3e-07	57.8	157	27.39
FC009G05560	Fragilariopsis cylindrus	2e-06	54.7	265	26.04
OS09G16150	Oryza sativa	3e-06	51.6	51	41.18
ES0051G00510	Ectocarpus siliculosus	6e-06	50.4	61	37.70
ATR_00048G01070	Amborella trichopoda	7e-06	50.1	80	32.50
phs239650	Phytophtora sojae	9e-06	52.0	224	23.66

External Sequences (optional)

External Sequences Type

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MSA algorithm
Tree construction algorithm
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