Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00373G00150	Physcomitrella patens	0.0	1446	696	100.00
PP00019G01110	Physcomitrella patens	0.0	1290	696	90.37
PP00162G00740	Physcomitrella patens	0.0	1224	699	85.84
PP00224G00220	Physcomitrella patens	0.0	1057	701	72.33
PP00089G01080	Physcomitrella patens	0.0	1045	702	73.22
PP00015G00680	Physcomitrella patens	0.0	985	704	69.03
PP00164G00010	Physcomitrella patens	0.0	966	705	68.51
ATR_00065G00270	Amborella trichopoda	0.0	942	729	67.35
ATR_00019G01680	Amborella trichopoda	0.0	940	702	67.52
AT4G31590	Arabidopsis thaliana	0.0	921	702	66.52
AT2G24630	Arabidopsis thaliana	0.0	912	702	65.53
AT4G07960	Arabidopsis thaliana	0.0	846	723	62.66
ATR_00013G02120	Amborella trichopoda	0.0	843	678	65.19
OS08G15420	Oryza sativa	0.0	844	741	59.78
AT3G07330	Arabidopsis thaliana	0.0	840	696	60.34
OS07G03260	Oryza sativa	0.0	834	688	64.53
AT3G28180	Arabidopsis thaliana	0.0	825	690	62.46
OS05G43530	Oryza sativa	0.0	815	684	63.45
OS01G56130	Oryza sativa	0.0	801	694	62.39
OS09G25900	Oryza sativa	0.0	788	695	61.01
OS03G56060	Oryza sativa	0.0	723	472	76.27
PP00065G00990	Physcomitrella patens	4e-148	449	539	43.23
PP00036G00370	Physcomitrella patens	2e-145	442	542	42.44
PP00036G01070	Physcomitrella patens	3e-145	441	542	42.25
AT5G22740	Arabidopsis thaliana	3e-143	436	558	41.04
OS02G09930	Oryza sativa	2e-142	434	554	40.97
AT5G03760	Arabidopsis thaliana	4e-142	433	541	41.59
ATR_00040G02570	Amborella trichopoda	4e-142	433	549	41.17
OS06G42020	Oryza sativa	4e-138	423	556	39.03
AT2G35650	Arabidopsis thaliana	6e-138	423	536	41.04
AT1G24070	Arabidopsis thaliana	1e-136	420	533	40.15
OS07G43710	Oryza sativa	8e-136	419	554	39.89
AT1G23480	Arabidopsis thaliana	2e-135	417	448	44.64
OS08G33740	Oryza sativa	2e-135	418	498	41.37
AT4G13410	Arabidopsis thaliana	3e-134	413	537	39.29
OS02G51060	Oryza sativa	5e-133	410	544	38.79
AT3G56000	Arabidopsis thaliana	6e-132	407	539	39.33
OS03G26044	Oryza sativa	2e-131	407	547	39.85
AT5G16190	Arabidopsis thaliana	1e-130	400	479	42.80
MRCC299_10G04230	Micromonas sp RCC299	2e-129	399	518	40.73
MP16G01280	Micromonas pusilla strain CCMP1545	6e-129	398	500	41.40
OS03G07350	Oryza sativa	1e-128	399	469	41.15
OM_17G00960	Ostreococcus mediterraneus	3e-125	392	542	38.56
OS10G26630	Oryza sativa	1e-124	388	476	42.02
PI00G51280	Picochlorum sp. SENEW3 (SE3)	5e-119	377	437	41.65
RCC4223.04g03450	Picochlorum_RCC4223	1e-117	374	550	36.36
OT_17G00830	Ostreococcus tauri	7e-117	368	430	41.86
BPRRCC1105_06G01240	Bathycoccus prasinos	8e-117	371	469	40.72
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	2e-116	367	469	38.38
AP00G21430	Auxenochlorella protothecoides	6e-116	369	547	38.39
HE0000G41170	Helicosporidium sp.	5e-114	363	547	37.29
CV00G12800	Coccomyxa subellipsoidea C-169	4e-113	359	529	36.48
OL16G00900	Ostreococcus lucimarinus	7e-112	354	446	41.03
ATR_00072G01360	Amborella trichopoda	2e-110	344	309	51.13
CV00G12810	Coccomyxa subellipsoidea C-169	3e-108	342	367	44.41
AT4G16590	Arabidopsis thaliana	8e-108	340	430	41.40
OS06G12460	Oryza sativa	9e-105	339	421	40.86
ORCC809_16G01780	Ostreococcus sp RCC809	7e-104	335	443	39.73
CNC64A_025G01180	Chlorella sp NC64A	2e-91	305	533	33.40
VC00G68920	Volvox carteri	6e-73	253	378	37.30
CR06G04470	Chlamydomonas reinhardtii	9e-69	243	378	37.30
OS09G26770	Oryza sativa	1e-59	214	337	35.01
emh181270	Emiliania huxleyi	3e-47	175	248	40.73
emh488170	Emiliania huxleyi	3e-47	175	248	40.73
OM_13G00450	Ostreococcus mediterraneus	2e-27	123	330	28.48
OL20G02910	Ostreococcus lucimarinus	7e-25	114	245	31.84
ATR_00067G00360	Amborella trichopoda	2e-24	105	132	58.33
ORCC809_20G02860	Ostreococcus sp RCC809	3e-24	112	253	30.43
OT_14G02980	Ostreococcus tauri	2e-23	110	246	29.27
DDB_G0269124	Dictyostelium discoideum	1e-19	98.2	256	30.47
ES0097G00210	Ectocarpus siliculosus	2e-18	94.4	296	28.72
ES0097G00300	Ectocarpus siliculosus	3e-18	93.6	333	28.83
Naga_100079g22	Nannochloropsis gaditana	6e-18	92.0	337	26.11
Naga_100049g27	Nannochloropsis gaditana	4e-17	89.7	255	26.67
ccr13740	Chondrus crispus	2e-16	87.0	282	26.95
ES0200G00060	Ectocarpus siliculosus	3e-16	86.7	322	27.02
ES0185G00090	Ectocarpus siliculosus	2e-14	81.6	341	26.10
OS11G13650	Oryza sativa	4e-14	77.0	223	30.49
PP00372G00370	Physcomitrella patens	1e-13	78.2	255	27.06
emh647580	Emiliania huxleyi	2e-13	78.2	249	25.70
PI00G46760	Picochlorum sp. SENEW3 (SE3)	5e-12	73.6	302	24.50
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	1e-11	72.0	272	26.84
RCC4223.10g01020	Picochlorum_RCC4223	1e-11	72.4	302	24.83
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	5e-11	70.1	232	27.16
CV00G83580	Coccomyxa subellipsoidea C-169	1e-10	68.9	296	26.69
ES0097G00120	Ectocarpus siliculosus	2e-09	65.1	200	30.50
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	4e-09	64.3	272	26.47
CV00G28250	Coccomyxa subellipsoidea C-169	2e-08	61.6	251	25.50
AP00G07320	Auxenochlorella protothecoides	4e-08	60.8	270	22.22
CV00G13860	Coccomyxa subellipsoidea C-169	1e-07	59.7	239	25.52
AC00G15120	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	59.3	247	25.91
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	2e-07	58.2	268	22.76
CV00G40830	Coccomyxa subellipsoidea C-169	3e-07	58.2	218	25.69
CV00G01670	Coccomyxa subellipsoidea C-169	3e-07	58.2	171	25.73
ES0231G00120	Ectocarpus siliculosus	4e-07	57.8	223	26.01
ccr65060	Chondrus crispus	5e-07	57.4	196	26.53
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	9e-07	56.6	225	24.44
PP00168G00010	Physcomitrella patens	4e-06	50.1	55	43.64
ES0231G00040	Ectocarpus siliculosus	7e-06	53.5	207	26.09

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment