Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00224G00220	Physcomitrella patens	0.0	1429	695	100.00
PP00089G01080	Physcomitrella patens	0.0	1308	698	91.98
PP00162G00740	Physcomitrella patens	0.0	1051	702	73.08
PP00019G01110	Physcomitrella patens	0.0	1045	701	72.47
PP00373G00150	Physcomitrella patens	0.0	1038	701	72.33
PP00015G00680	Physcomitrella patens	0.0	945	702	67.52
PP00164G00010	Physcomitrella patens	0.0	921	702	66.52
ATR_00019G01680	Amborella trichopoda	0.0	917	698	66.19
AT2G24630	Arabidopsis thaliana	0.0	888	699	64.23
AT4G31590	Arabidopsis thaliana	0.0	887	699	64.81
ATR_00065G00270	Amborella trichopoda	0.0	875	714	64.43
OS08G15420	Oryza sativa	0.0	818	739	58.19
ATR_00013G02120	Amborella trichopoda	0.0	810	672	62.95
AT4G07960	Arabidopsis thaliana	0.0	804	704	62.22
AT3G07330	Arabidopsis thaliana	0.0	797	694	57.20
OS07G03260	Oryza sativa	0.0	796	686	61.95
AT3G28180	Arabidopsis thaliana	0.0	792	690	60.72
OS05G43530	Oryza sativa	0.0	786	677	61.89
OS09G25900	Oryza sativa	0.0	783	686	61.81
OS01G56130	Oryza sativa	0.0	776	690	61.45
OS03G56060	Oryza sativa	0.0	691	469	74.63
PP00065G00990	Physcomitrella patens	2e-146	444	540	42.59
ATR_00040G02570	Amborella trichopoda	2e-146	444	538	42.57
PP00036G01070	Physcomitrella patens	1e-145	443	540	42.41
PP00036G00370	Physcomitrella patens	4e-145	441	550	42.18
AT5G03760	Arabidopsis thaliana	2e-143	437	540	41.11
OS02G09930	Oryza sativa	6e-140	427	549	40.44
AT5G22740	Arabidopsis thaliana	9e-140	427	547	41.32
OS06G42020	Oryza sativa	4e-136	417	556	38.49
AT1G23480	Arabidopsis thaliana	5e-136	418	540	41.11
AT4G13410	Arabidopsis thaliana	3e-135	416	538	39.41
AT1G24070	Arabidopsis thaliana	2e-134	414	534	39.33
AT2G35650	Arabidopsis thaliana	3e-134	414	450	44.44
OS03G07350	Oryza sativa	9e-133	410	473	42.49
OS08G33740	Oryza sativa	6e-131	406	500	41.40
OS07G43710	Oryza sativa	3e-130	404	560	38.57
AT3G56000	Arabidopsis thaliana	3e-129	400	542	39.67
AT5G16190	Arabidopsis thaliana	9e-129	395	481	42.00
OS03G26044	Oryza sativa	1e-127	397	548	39.23
OS10G26630	Oryza sativa	1e-127	395	477	42.35
OS02G51060	Oryza sativa	2e-125	390	553	37.07
MRCC299_10G04230	Micromonas sp RCC299	4e-124	385	521	40.12
MP16G01280	Micromonas pusilla strain CCMP1545	4e-123	382	502	39.64
OM_17G00960	Ostreococcus mediterraneus	1e-122	385	477	40.67
PI00G51280	Picochlorum sp. SENEW3 (SE3)	1e-118	376	434	41.71
BPRRCC1105_06G01240	Bathycoccus prasinos	5e-117	372	448	42.19
RCC4223.04g03450	Picochlorum_RCC4223	4e-116	369	427	41.69
OT_17G00830	Ostreococcus tauri	9e-116	365	427	41.45
ATR_00072G01360	Amborella trichopoda	2e-115	357	304	54.28
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	2e-115	364	545	36.33
AP00G21430	Auxenochlorella protothecoides	8e-115	365	536	38.62
CV00G12800	Coccomyxa subellipsoidea C-169	2e-114	363	530	36.79
OS06G12460	Oryza sativa	2e-112	359	532	37.97
OL16G00900	Ostreococcus lucimarinus	2e-110	351	425	41.18
HE0000G41170	Helicosporidium sp.	5e-110	353	435	41.38
CV00G12810	Coccomyxa subellipsoidea C-169	2e-108	342	364	43.96
AT4G16590	Arabidopsis thaliana	2e-105	333	431	39.91
ORCC809_16G01780	Ostreococcus sp RCC809	2e-100	326	424	39.39
CNC64A_025G01180	Chlorella sp NC64A	1e-87	294	425	36.47
VC00G68920	Volvox carteri	9e-74	255	364	38.19
CR06G04470	Chlamydomonas reinhardtii	6e-72	252	371	38.81
OS09G26770	Oryza sativa	3e-62	221	339	37.17
emh181270	Emiliania huxleyi	7e-48	177	248	40.32
emh488170	Emiliania huxleyi	7e-48	177	248	40.32
OM_13G00450	Ostreococcus mediterraneus	9e-27	120	312	28.53
OT_14G02980	Ostreococcus tauri	3e-25	115	246	30.08
ORCC809_20G02860	Ostreococcus sp RCC809	6e-25	114	253	29.64
OL20G02910	Ostreococcus lucimarinus	7e-25	114	250	30.00
PP00168G00010	Physcomitrella patens	9e-21	92.0	55	74.55
ATR_00067G00360	Amborella trichopoda	2e-20	93.6	134	52.24
ES0097G00300	Ectocarpus siliculosus	1e-17	91.7	303	28.38
ES0097G00210	Ectocarpus siliculosus	3e-17	90.5	249	29.72
DDB_G0269124	Dictyostelium discoideum	2e-15	84.7	247	29.55
Naga_100079g22	Nannochloropsis gaditana	7e-15	82.4	288	24.65
ES0200G00060	Ectocarpus siliculosus	1e-14	81.6	322	25.16
OS11G13650	Oryza sativa	3e-14	77.4	200	31.50
Naga_100049g27	Nannochloropsis gaditana	1e-12	75.5	282	24.82
ES0185G00090	Ectocarpus siliculosus	6e-12	73.2	335	25.97
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	3e-11	70.9	237	26.58
ES0097G00120	Ectocarpus siliculosus	8e-11	69.3	202	30.69
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	1e-10	68.6	266	25.94
ccr13740	Chondrus crispus	2e-10	68.2	287	24.39
PP00372G00370	Physcomitrella patens	2e-10	67.8	247	23.48
PI00G46760	Picochlorum sp. SENEW3 (SE3)	7e-10	67.0	275	22.91
emh647580	Emiliania huxleyi	3e-09	64.3	247	24.29
RCC4223.10g01020	Picochlorum_RCC4223	4e-09	64.3	275	22.91
CV00G83580	Coccomyxa subellipsoidea C-169	4e-08	60.8	167	27.54
ccr65060	Chondrus crispus	5e-08	60.5	326	23.01
AP00G07320	Auxenochlorella protothecoides	2e-07	58.9	205	23.41
CV00G28250	Coccomyxa subellipsoidea C-169	5e-07	57.4	299	23.75
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	1e-06	55.8	291	24.74
CV00G13860	Coccomyxa subellipsoidea C-169	2e-06	55.5	238	24.79
CV00G40830	Coccomyxa subellipsoidea C-169	5e-06	53.9	344	21.22
ES0231G00120	Ectocarpus siliculosus	6e-06	53.9	246	24.39
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	7e-06	53.1	208	23.56

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment