Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00065G00990	Physcomitrella patens	0.0	1122	539	100.00
PP00036G00370	Physcomitrella patens	0.0	1065	539	93.69
PP00036G01070	Physcomitrella patens	0.0	1045	539	91.84
ATR_00040G02570	Amborella trichopoda	0.0	771	525	67.62
AT5G03760	Arabidopsis thaliana	0.0	749	522	65.52
AT5G22740	Arabidopsis thaliana	0.0	718	523	63.10
OS06G42020	Oryza sativa	0.0	716	544	61.95
AT1G23480	Arabidopsis thaliana	0.0	701	524	62.60
OS02G09930	Oryza sativa	0.0	696	534	61.80
AT4G13410	Arabidopsis thaliana	0.0	664	513	58.48
AT2G35650	Arabidopsis thaliana	0.0	656	518	60.04
AT1G24070	Arabidopsis thaliana	0.0	644	511	58.32
AT3G56000	Arabidopsis thaliana	0.0	615	512	57.03
OS03G07350	Oryza sativa	0.0	613	524	55.73
AT5G16190	Arabidopsis thaliana	0.0	597	456	61.62
OS08G33740	Oryza sativa	0.0	594	539	52.32
OS02G51060	Oryza sativa	0.0	588	524	52.67
OS10G26630	Oryza sativa	0.0	559	515	52.82
OS07G43710	Oryza sativa	0.0	560	516	51.16
OS03G26044	Oryza sativa	0.0	554	524	50.76
AT4G16590	Arabidopsis thaliana	2e-173	503	404	56.93
ATR_00072G01360	Amborella trichopoda	9e-168	486	314	70.06
OS06G12460	Oryza sativa	8e-166	491	396	59.09
PP00373G00150	Physcomitrella patens	7e-147	446	454	47.58
PP00224G00220	Physcomitrella patens	1e-146	444	540	42.59
AT3G07330	Arabidopsis thaliana	7e-146	442	528	42.99
AT2G24630	Arabidopsis thaliana	8e-146	442	469	46.06
AT4G31590	Arabidopsis thaliana	1e-144	439	533	42.59
PP00019G01110	Physcomitrella patens	2e-144	439	443	47.63
AT3G28180	Arabidopsis thaliana	2e-142	434	430	48.84
PP00015G00680	Physcomitrella patens	3e-142	434	431	47.33
OS07G03260	Oryza sativa	5e-142	432	540	42.04
PP00162G00740	Physcomitrella patens	2e-141	431	432	48.61
PP00089G01080	Physcomitrella patens	3e-141	431	541	41.40
ATR_00019G01680	Amborella trichopoda	4e-140	428	431	47.10
OS01G56130	Oryza sativa	1e-139	427	531	42.56
ATR_00065G00270	Amborella trichopoda	6e-139	426	551	41.20
OS05G43530	Oryza sativa	9e-139	424	528	42.80
PP00164G00010	Physcomitrella patens	2e-138	424	432	46.99
OS08G15420	Oryza sativa	1e-137	423	432	45.60
OS09G25900	Oryza sativa	2e-136	419	533	40.53
OS03G56060	Oryza sativa	5e-135	407	455	45.05
AT4G07960	Arabidopsis thaliana	2e-134	414	527	42.50
ATR_00013G02120	Amborella trichopoda	3e-133	409	531	41.81
BPRRCC1105_06G01240	Bathycoccus prasinos	3e-130	400	445	43.37
MRCC299_10G04230	Micromonas sp RCC299	4e-129	393	495	40.81
PI00G51280	Picochlorum sp. SENEW3 (SE3)	2e-128	396	508	41.14
OM_17G00960	Ostreococcus mediterraneus	6e-128	394	522	38.12
CV00G12800	Coccomyxa subellipsoidea C-169	2e-127	391	501	41.12
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	8e-127	388	503	39.96
MP16G01280	Micromonas pusilla strain CCMP1545	1e-125	384	445	41.80
AP00G21430	Auxenochlorella protothecoides	5e-125	387	503	40.95
RCC4223.04g03450	Picochlorum_RCC4223	9e-125	387	437	43.71
OT_17G00830	Ostreococcus tauri	2e-124	382	504	37.50
CV00G12810	Coccomyxa subellipsoidea C-169	6e-121	370	365	48.22
OL16G00900	Ostreococcus lucimarinus	9e-120	370	507	38.66
HE0000G41170	Helicosporidium sp.	1e-114	360	503	38.57
ORCC809_16G01780	Ostreococcus sp RCC809	7e-112	351	522	36.59
CNC64A_025G01180	Chlorella sp NC64A	1e-103	332	509	38.31
OS09G26770	Oryza sativa	2e-96	308	320	49.69
VC00G68920	Volvox carteri	2e-73	250	378	36.24
CR06G04470	Chlamydomonas reinhardtii	5e-72	248	443	34.76
emh181270	Emiliania huxleyi	2e-54	192	288	39.58
emh488170	Emiliania huxleyi	2e-54	192	288	39.58
PP00435G00020	Physcomitrella patens	3e-40	146	112	71.43
ORCC809_20G02860	Ostreococcus sp RCC809	2e-29	127	263	30.42
OM_13G00450	Ostreococcus mediterraneus	2e-27	120	263	28.90
OL20G02910	Ostreococcus lucimarinus	6e-27	119	263	30.04
OT_14G02980	Ostreococcus tauri	8e-24	109	259	27.03
Naga_100049g27	Nannochloropsis gaditana	3e-14	79.3	264	26.89
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	8e-13	75.1	255	25.88
ccr13740	Chondrus crispus	2e-12	73.9	297	24.92
emh647580	Emiliania huxleyi	4e-12	72.8	299	24.08
PP00372G00370	Physcomitrella patens	9e-12	71.6	263	27.38
Naga_100079g22	Nannochloropsis gaditana	7e-11	68.9	367	22.89
ES0200G00060	Ectocarpus siliculosus	1e-10	68.2	243	27.16
PI00G60790	Picochlorum sp. SENEW3 (SE3)	3e-10	67.0	261	23.75
ES0097G00300	Ectocarpus siliculosus	4e-10	67.0	261	28.35
ES0097G00210	Ectocarpus siliculosus	8e-10	65.9	280	25.71
CV00G83580	Coccomyxa subellipsoidea C-169	4e-09	63.5	300	25.67
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	4e-09	63.5	350	23.43
CV00G40830	Coccomyxa subellipsoidea C-169	5e-09	63.2	269	25.65
PI00G46760	Picochlorum sp. SENEW3 (SE3)	2e-08	61.6	250	24.80
RCC4223.10g01020	Picochlorum_RCC4223	2e-08	61.6	250	25.60
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	2e-08	61.6	309	24.27
CM20G02670	Cyanidioschyzon merolae	4e-08	59.7	265	23.77
ES0185G00090	Ectocarpus siliculosus	2e-07	58.2	312	25.00
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	2e-07	57.8	242	24.38
AP00G07320	Auxenochlorella protothecoides	2e-07	57.8	245	23.67
CV00G13860	Coccomyxa subellipsoidea C-169	2e-07	57.8	326	23.01
CV00G28250	Coccomyxa subellipsoidea C-169	3e-07	57.8	326	22.70
DDB_G0269124	Dictyostelium discoideum	9e-07	55.8	182	23.63
AC00G28500	Asterochloris sp. Cgr-DA1pho v2.0	6e-06	53.1	236	26.27
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	6e-06	53.1	292	23.63

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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