Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00036G00370	Physcomitrella patens	0.0	1123	539	100.00
PP00065G00990	Physcomitrella patens	0.0	1065	539	93.69
PP00036G01070	Physcomitrella patens	0.0	1052	539	92.39
ATR_00040G02570	Amborella trichopoda	0.0	766	530	66.42
AT5G03760	Arabidopsis thaliana	0.0	748	542	64.02
AT5G22740	Arabidopsis thaliana	0.0	717	523	61.95
OS06G42020	Oryza sativa	0.0	713	534	61.99
AT1G23480	Arabidopsis thaliana	0.0	695	534	61.24
OS02G09930	Oryza sativa	0.0	690	521	62.19
AT4G13410	Arabidopsis thaliana	0.0	658	531	56.50
AT2G35650	Arabidopsis thaliana	0.0	646	518	58.88
AT1G24070	Arabidopsis thaliana	0.0	637	511	57.34
OS03G07350	Oryza sativa	0.0	614	524	55.53
AT3G56000	Arabidopsis thaliana	0.0	611	512	56.84
OS08G33740	Oryza sativa	0.0	598	539	52.32
AT5G16190	Arabidopsis thaliana	0.0	589	456	60.96
OS02G51060	Oryza sativa	0.0	590	528	52.27
OS03G26044	Oryza sativa	0.0	565	526	51.52
OS07G43710	Oryza sativa	0.0	563	525	50.86
OS10G26630	Oryza sativa	0.0	557	515	52.43
OS06G12460	Oryza sativa	0.0	543	506	54.15
AT4G16590	Arabidopsis thaliana	2e-172	500	404	57.43
ATR_00072G01360	Amborella trichopoda	4e-169	489	314	70.38
PP00224G00220	Physcomitrella patens	3e-145	441	550	42.18
PP00373G00150	Physcomitrella patens	7e-145	440	453	47.02
AT4G31590	Arabidopsis thaliana	9e-145	440	533	42.59
AT3G28180	Arabidopsis thaliana	3e-144	438	438	48.63
AT2G24630	Arabidopsis thaliana	7e-144	437	467	46.04
PP00019G01110	Physcomitrella patens	2e-143	437	444	47.75
OS07G03260	Oryza sativa	2e-143	436	551	41.02
ATR_00019G01680	Amborella trichopoda	7e-143	435	471	45.44
ATR_00065G00270	Amborella trichopoda	1e-141	432	439	46.01
AT3G07330	Arabidopsis thaliana	1e-141	431	541	41.22
PP00015G00680	Physcomitrella patens	1e-140	429	432	46.76
PP00162G00740	Physcomitrella patens	2e-140	429	432	48.61
PP00089G01080	Physcomitrella patens	3e-140	429	541	41.40
OS01G56130	Oryza sativa	2e-138	424	536	43.28
OS09G25900	Oryza sativa	2e-137	421	470	43.83
OS08G15420	Oryza sativa	3e-137	422	432	45.60
PP00164G00010	Physcomitrella patens	5e-137	420	432	46.53
OS05G43530	Oryza sativa	5e-136	417	530	42.08
OS03G56060	Oryza sativa	2e-135	408	455	44.84
AT4G07960	Arabidopsis thaliana	4e-134	412	538	41.45
ATR_00013G02120	Amborella trichopoda	2e-130	402	531	41.43
MRCC299_10G04230	Micromonas sp RCC299	2e-129	394	495	41.41
CV00G12800	Coccomyxa subellipsoidea C-169	4e-128	393	501	41.32
BPRRCC1105_06G01240	Bathycoccus prasinos	6e-128	395	445	42.70
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	6e-127	389	503	40.36
PI00G51280	Picochlorum sp. SENEW3 (SE3)	2e-126	391	429	44.06
OM_17G00960	Ostreococcus mediterraneus	8e-126	388	530	37.36
MP16G01280	Micromonas pusilla strain CCMP1545	2e-124	381	445	41.57
RCC4223.04g03450	Picochlorum_RCC4223	2e-123	383	437	43.02
OT_17G00830	Ostreococcus tauri	1e-122	378	504	37.50
AP00G21430	Auxenochlorella protothecoides	5e-122	379	503	39.96
CV00G12810	Coccomyxa subellipsoidea C-169	2e-121	371	365	48.49
OL16G00900	Ostreococcus lucimarinus	3e-118	366	530	37.36
HE0000G41170	Helicosporidium sp.	2e-112	354	503	38.37
ORCC809_16G01780	Ostreococcus sp RCC809	2e-109	344	522	35.82
CNC64A_025G01180	Chlorella sp NC64A	3e-102	328	508	37.99
OS09G26770	Oryza sativa	8e-98	312	320	50.31
VC00G68920	Volvox carteri	2e-71	245	375	35.73
CR06G04470	Chlamydomonas reinhardtii	7e-71	245	443	34.76
emh181270	Emiliania huxleyi	3e-55	195	329	38.30
emh488170	Emiliania huxleyi	3e-55	195	329	38.30
PP00435G00020	Physcomitrella patens	1e-39	145	112	70.54
ORCC809_20G02860	Ostreococcus sp RCC809	2e-30	130	244	32.38
OL20G02910	Ostreococcus lucimarinus	4e-28	122	263	31.18
OM_13G00450	Ostreococcus mediterraneus	7e-28	122	263	29.66
OT_14G02980	Ostreococcus tauri	1e-23	109	245	28.57
Naga_100049g27	Nannochloropsis gaditana	4e-14	79.3	264	27.27
PP00372G00370	Physcomitrella patens	5e-13	75.5	263	28.52
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	1e-12	74.3	256	25.78
emh647580	Emiliania huxleyi	1e-12	74.7	265	26.04
ccr13740	Chondrus crispus	1e-11	71.2	295	25.42
PI00G60790	Picochlorum sp. SENEW3 (SE3)	4e-11	70.1	280	24.64
Naga_100079g22	Nannochloropsis gaditana	2e-10	67.4	339	23.30
ES0200G00060	Ectocarpus siliculosus	2e-10	67.4	241	26.56
ES0097G00210	Ectocarpus siliculosus	4e-09	63.5	169	28.40
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	4e-09	63.5	345	24.06
ES0097G00300	Ectocarpus siliculosus	4e-09	63.5	169	28.40
CM20G02670	Cyanidioschyzon merolae	9e-09	61.6	277	24.19
ES0185G00090	Ectocarpus siliculosus	9e-09	62.4	311	26.05
PI00G46760	Picochlorum sp. SENEW3 (SE3)	1e-08	62.4	303	23.10
CV00G83580	Coccomyxa subellipsoidea C-169	1e-08	62.0	294	26.19
RCC4223.10g01020	Picochlorum_RCC4223	2e-08	61.6	302	23.84
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	3e-08	60.8	311	24.44
CV00G40830	Coccomyxa subellipsoidea C-169	2e-07	57.8	294	23.47
CV00G13860	Coccomyxa subellipsoidea C-169	6e-07	56.6	322	22.67
CV00G28250	Coccomyxa subellipsoidea C-169	9e-07	56.2	326	23.01
DDB_G0269124	Dictyostelium discoideum	9e-07	55.8	164	24.39
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	1e-06	55.5	288	23.26
AC00G15120	Asterochloris sp. Cgr-DA1pho v2.0	1e-06	55.5	296	25.34
AP00G07320	Auxenochlorella protothecoides	1e-06	55.5	278	23.38
AC00G28500	Asterochloris sp. Cgr-DA1pho v2.0	2e-06	55.1	236	26.27
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	8e-06	52.8	196	27.04
CV00G01670	Coccomyxa subellipsoidea C-169	9e-06	52.8	366	23.22

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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