Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00008G00780	Physcomitrella patens	0.0	1644	785	100.00
PP00112G00250	Physcomitrella patens	0.0	1465	784	93.11
PP00030G00170	Physcomitrella patens	0.0	1160	789	74.27
PP00029G01150	Physcomitrella patens	0.0	1139	793	71.37
ATR_00022G00640	Amborella trichopoda	0.0	1100	794	70.15
PP00090G01250	Physcomitrella patens	0.0	1091	800	68.38
OS07G24190	Oryza sativa	0.0	1087	791	69.28
OS03G62090	Oryza sativa	0.0	1073	790	67.85
OS07G14850	Oryza sativa	0.0	1036	797	66.62
ATR_00017G02090	Amborella trichopoda	0.0	1007	793	66.83
ATR_00081G00760	Amborella trichopoda	0.0	1004	799	63.58
ATR_00137G00140	Amborella trichopoda	0.0	989	786	64.38
ATR_00103G00760	Amborella trichopoda	0.0	971	785	63.31
AT2G21770	Arabidopsis thaliana	0.0	965	794	61.34
AT5G64740	Arabidopsis thaliana	0.0	964	792	62.75
AT4G39350	Arabidopsis thaliana	0.0	961	795	64.78
AT4G32410	Arabidopsis thaliana	0.0	959	796	60.43
AT5G09870	Arabidopsis thaliana	0.0	957	790	61.14
OS05G08370	Oryza sativa	0.0	950	792	61.49
OS09G25490	Oryza sativa	0.0	944	801	62.17
AT5G17420	Arabidopsis thaliana	0.0	936	785	61.78
AT2G25540	Arabidopsis thaliana	0.0	930	795	57.86
AT5G05170	Arabidopsis thaliana	0.0	927	773	61.19
OS07G10770	Oryza sativa	0.0	926	774	62.02
PP00213G00010	Physcomitrella patens	0.0	922	616	72.24
OS03G59340	Oryza sativa	0.0	921	775	62.45
AT5G44030	Arabidopsis thaliana	0.0	865	773	56.53
ATR_00067G02090	Amborella trichopoda	0.0	850	768	57.94
ATR_00170G00010	Amborella trichopoda	0.0	774	575	66.09
OS10G32980	Oryza sativa	0.0	764	626	61.66
AT4G18780	Arabidopsis thaliana	0.0	744	591	61.42
OS01G54620	Oryza sativa	0.0	730	580	62.93
ATR_00002G02960	Amborella trichopoda	0.0	714	528	63.64
ATR_00045G01550	Amborella trichopoda	0.0	701	578	59.86
OS06G39970	Oryza sativa	0.0	563	545	52.48
ATR_00048G00590	Amborella trichopoda	3e-169	526	841	39.95
PP00243G00060	Physcomitrella patens	6e-165	516	808	41.58
OS06G02180	Oryza sativa	6e-165	515	846	39.24
AT3G03050	Arabidopsis thaliana	8e-165	514	652	45.25
AT5G16910	Arabidopsis thaliana	2e-164	513	861	39.26
PP00111G00180	Physcomitrella patens	4e-164	513	813	40.84
OS10G42750	Oryza sativa	1e-163	511	828	38.77
PP00057G00480	Physcomitrella patens	1e-162	509	827	39.78
PP00111G00250	Physcomitrella patens	3e-162	508	604	47.02
OS12G36890	Oryza sativa	3e-162	509	614	45.77
PP00269G00120	Physcomitrella patens	2e-160	503	803	39.98
AT1G02730	Arabidopsis thaliana	2e-159	501	608	47.70
PP00310G00070	Physcomitrella patens	4e-159	500	653	43.95
PP00243G00010	Physcomitrella patens	7e-159	499	616	46.43
AT4G38190	Arabidopsis thaliana	5e-156	490	707	42.15
ATR_00022G01210	Amborella trichopoda	3e-155	489	653	45.02
AT2G33100	Arabidopsis thaliana	4e-152	478	719	41.31
ATR_00019G03800	Amborella trichopoda	5e-150	473	597	46.57
OS08G25710	Oryza sativa	1e-148	471	602	44.52
AT1G32180	Arabidopsis thaliana	5e-148	466	608	44.24
OS06G22980	Oryza sativa	3e-141	449	605	42.48
PP00068G00840	Physcomitrella patens	2e-137	442	599	43.74
PP00059G01570	Physcomitrella patens	1e-132	412	299	67.89
PP00189G00480	Physcomitrella patens	1e-129	406	280	75.36
PP00189G00510	Physcomitrella patens	1e-129	406	280	75.36
OS07G36630	Oryza sativa	4e-123	397	563	40.50
OS08G06380	Oryza sativa	9e-123	398	459	45.53
OS07G36690	Oryza sativa	3e-122	395	447	45.64
OS07G36700	Oryza sativa	2e-120	390	446	45.52
PP00059G01580	Physcomitrella patens	2e-120	370	249	74.30
OS07G36610	Oryza sativa	1e-117	383	439	44.87
OS07G36740	Oryza sativa	3e-116	379	440	46.36
OS07G36750	Oryza sativa	5e-110	362	434	44.01
OS10G20260	Oryza sativa	3e-101	338	435	42.30
ATR_00061G02350	Amborella trichopoda	6e-90	305	378	44.18
OS09G30120	Oryza sativa	7e-86	294	344	42.73
OS09G30130	Oryza sativa	1e-83	288	344	42.44
AT1G55850	Arabidopsis thaliana	8e-82	283	392	39.03
OS02G49332	Oryza sativa	4e-81	281	379	39.84
ATR_00017G00080	Amborella trichopoda	4e-80	277	330	43.03
ATR_00017G01730	Amborella trichopoda	6e-80	278	499	34.87
AT2G32530	Arabidopsis thaliana	3e-78	274	369	40.65
ATR_00057G00930	Amborella trichopoda	4e-76	263	390	43.33
ATR_00021G02120	Amborella trichopoda	2e-74	262	340	42.06
AT2G32540	Arabidopsis thaliana	4e-74	262	342	40.35
AT2G32620	Arabidopsis thaliana	8e-74	261	358	39.66
OS10G20090	Oryza sativa	1e-72	258	339	39.82
PP00189G00490	Physcomitrella patens	3e-72	243	265	50.19
AT4G15290	Arabidopsis thaliana	7e-72	256	342	39.47
AT2G32610	Arabidopsis thaliana	3e-71	254	373	38.07
AT4G24010	Arabidopsis thaliana	3e-71	254	390	37.95
AT4G23990	Arabidopsis thaliana	4e-70	251	351	39.32
AT4G24000	Arabidopsis thaliana	2e-68	245	391	37.60
ATR_00057G00940	Amborella trichopoda	4e-68	242	286	46.85
AT4G15320	Arabidopsis thaliana	3e-64	235	475	33.26
ATR_00017G00110	Amborella trichopoda	7e-60	217	268	43.66
OS04G35020	Oryza sativa	2e-50	192	354	33.62
PP00015G00170	Physcomitrella patens	1e-48	172	102	80.39
OS12G29300	Oryza sativa	1e-44	166	146	54.79
OS04G35030	Oryza sativa	2e-43	166	362	30.39
PP00213G00020	Physcomitrella patens	3e-42	156	163	50.92
ATR_00061G02330	Amborella trichopoda	4e-39	156	187	43.32
PP00189G00520	Physcomitrella patens	2e-37	143	95	67.37
PP00120G00840	Physcomitrella patens	2e-29	119	85	68.24
OS09G30105	Oryza sativa	5e-22	102	103	45.63
ATR_00061G02320	Amborella trichopoda	1e-19	90.1	75	52.00
ATR_00067G02080	Amborella trichopoda	2e-16	82.4	45	75.56
OS07G36680	Oryza sativa	1e-14	79.0	83	50.60
ccr65060	Chondrus crispus	7e-08	60.5	149	30.87
PP00116G00690	Physcomitrella patens	1e-07	58.9	47	61.70
ccr122880	Chondrus crispus	3e-07	58.2	151	29.80
PI00G60790	Picochlorum sp. SENEW3 (SE3)	1e-06	56.6	135	31.11
PP00372G00370	Physcomitrella patens	6e-06	53.9	132	30.30
OS06G11050	Oryza sativa	7e-06	53.1	59	49.15

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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