Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS12G37260	Oryza sativa	0.0	1930	923	100.00
OS12G37350	Oryza sativa	0.0	872	453	91.17
OS02G10120	Oryza sativa	0.0	849	807	53.41
ATR_00022G02400	Amborella trichopoda	0.0	829	815	53.99
ATR_00022G02450	Amborella trichopoda	0.0	829	817	53.73
AT3G45140	Arabidopsis thaliana	0.0	816	797	52.57
OS08G39840	Oryza sativa	0.0	791	865	49.60
OS08G39850	Oryza sativa	0.0	792	851	50.18
ATR_00049G02180	Amborella trichopoda	0.0	695	800	46.75
PP00070G00750	Physcomitrella patens	0.0	675	820	45.49
AT1G72520	Arabidopsis thaliana	0.0	672	845	43.67
AT1G17420	Arabidopsis thaliana	0.0	664	930	41.29
OS03G08220	Oryza sativa	0.0	664	874	43.59
AT1G67560	Arabidopsis thaliana	0.0	655	803	45.45
AT1G55020	Arabidopsis thaliana	0.0	620	808	44.55
PP00232G00410	Physcomitrella patens	0.0	608	804	42.91
PP00021G01990	Physcomitrella patens	0.0	601	801	42.07
PP00171G00680	Physcomitrella patens	0.0	598	801	42.07
AT3G22400	Arabidopsis thaliana	0.0	593	799	41.80
PP00434G00160	Physcomitrella patens	0.0	589	812	42.36
PP00097G01010	Physcomitrella patens	0.0	582	796	42.09
ATR_00066G00560	Amborella trichopoda	0.0	569	812	40.39
PP00036G01900	Physcomitrella patens	0.0	571	725	43.31
OS03G49380	Oryza sativa	0.0	568	808	41.58
OS03G49260	Oryza sativa	0.0	566	791	43.11
OS12G37320	Oryza sativa	0.0	538	380	73.68
OS05G23880	Oryza sativa	5e-180	550	810	41.48
OS03G52860	Oryza sativa	7e-180	550	794	41.69
OS03G49350	Oryza sativa	3e-179	543	722	43.77
ATR_00024G02970	Amborella trichopoda	1e-177	538	635	45.04
PP00419G00020	Physcomitrella patens	3e-177	545	799	39.67
PP00419G00030	Physcomitrella patens	3e-177	545	799	39.67
OS11G36719	Oryza sativa	7e-166	514	798	40.98
PP00419G00050	Physcomitrella patens	2e-165	514	869	37.17
PP00419G00010	Physcomitrella patens	7e-164	511	935	35.72
OS04G37430	Oryza sativa	2e-139	442	586	42.15
CV00G27150	Coccomyxa subellipsoidea C-169	6e-132	432	872	36.58
PP00190G00290	Physcomitrella patens	7e-126	407	559	42.75
ATR_00022G02890	Amborella trichopoda	3e-122	391	538	42.75
PP00312G00290	Physcomitrella patens	1e-119	376	435	45.98
CV00G19880	Coccomyxa subellipsoidea C-169	8e-119	385	762	33.99
ATR_00022G02410	Amborella trichopoda	2e-105	336	316	56.01
AC00G29780	Asterochloris sp. Cgr-DA1pho v2.0	3e-89	294	331	46.22
PP00505G00140	Physcomitrella patens	3e-87	288	328	45.43
VC00G96890	Volvox carteri	3e-85	301	586	33.62
VC00G96880	Volvox carteri	3e-83	295	610	32.62
CR12G02920	Chlamydomonas reinhardtii	1e-80	288	580	34.14
VC00G90100	Volvox carteri	1e-76	275	471	36.94
VC00G90070	Volvox carteri	6e-76	274	581	34.60
ATR_00022G02900	Amborella trichopoda	4e-62	216	250	47.60
ATR_00103G00230	Amborella trichopoda	8e-62	215	250	46.80
CNC64A_001G03010	Chlorella sp NC64A	4e-61	216	353	38.81
VC00G90090	Volvox carteri	1e-58	223	355	38.31
ENSG00000275565	Homo sapiens	3e-46	181	537	29.42
ENSG00000012779	Homo sapiens	3e-46	181	537	29.42
ENSG00000179593	Homo sapiens	9e-41	164	512	27.73
ENSMUSG00000018924	Mus musculus	1e-40	164	512	27.54
OL07G01910	Ostreococcus lucimarinus	1e-40	166	541	24.77
ENSG00000179477	Homo sapiens	2e-40	164	501	26.95
ENSMUSG00000032807	Mus musculus	3e-37	153	498	25.70
ENSMUSG00000000320	Mus musculus	2e-35	148	518	27.22
DDB_G0279909	Dictyostelium discoideum	2e-32	138	523	25.62
ATR_00103G00260	Amborella trichopoda	4e-29	123	164	42.68
ES0424G00020	Ectocarpus siliculosus	2e-27	123	469	27.08
ATR_00022G02390	Amborella trichopoda	1e-26	110	95	52.63
ES0424G00010	Ectocarpus siliculosus	9e-26	117	400	27.50
ES0010G00330	Ectocarpus siliculosus	3e-25	116	376	27.93
ccr28460	Chondrus crispus	2e-24	113	418	27.27
PP00312G00300	Physcomitrella patens	6e-23	105	184	35.33
ES0010G00190	Ectocarpus siliculosus	1e-18	94.7	359	26.18
OS02G19790	Oryza sativa	1e-15	82.8	180	32.22
phs48550	Phytophtora sojae	2e-09	65.5	307	25.41
phs48530	Phytophtora sojae	9e-09	62.8	257	26.85
OS06G04420	Oryza sativa	1e-08	58.9	93	34.41
phs199810	Phytophtora sojae	7e-08	60.5	329	24.01
phs75850	Phytophtora sojae	1e-07	59.3	337	25.52

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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