Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS12G36630	Oryza sativa	1e-115	331	161	100.00
OS12G36640	Oryza sativa	2e-75	229	158	67.72
AT2G47710	Arabidopsis thaliana	2e-60	191	154	61.04
ATR_00045G03170	Amborella trichopoda	5e-57	182	156	55.77
ATR_00016G03410	Amborella trichopoda	3e-55	177	153	58.17
OS07G47620	Oryza sativa	2e-50	166	154	53.90
ATR_00003G00120	Amborella trichopoda	6e-31	115	150	40.00
ATR_00079G00520	Amborella trichopoda	1e-28	109	159	36.48
AT5G49050	Arabidopsis thaliana	2e-26	103	118	46.61
AT3G11930	Arabidopsis thaliana	8e-26	103	191	33.51
AT1G09740	Arabidopsis thaliana	1e-24	99.0	171	34.50
AT3G58450	Arabidopsis thaliana	1e-23	97.4	166	35.54
OS03G22390	Oryza sativa	2e-23	95.9	149	41.61
OS05G28740	Oryza sativa	3e-23	95.5	163	32.52
OS01G19820	Oryza sativa	5e-22	92.4	152	34.21
OS10G30150	Oryza sativa	9e-22	91.7	164	36.59
AT3G62550	Arabidopsis thaliana	1e-21	90.9	156	33.97
OS03G53900	Oryza sativa	3e-21	90.5	156	37.18
OS01G32780	Oryza sativa	4e-21	89.7	156	34.62
AT1G68300	Arabidopsis thaliana	2e-20	87.8	159	35.22
OS03G19270	Oryza sativa	3e-20	88.2	176	32.95
ATR_00003G00130	Amborella trichopoda	4e-19	82.4	82	51.22
ATR_00105G00370	Amborella trichopoda	9e-18	80.1	132	35.61
OS02G52314	Oryza sativa	2e-15	73.9	162	29.01
PP00336G00330	Physcomitrella patens	4e-15	75.1	160	31.25
ATR_00058G02030	Amborella trichopoda	2e-14	71.6	145	31.72
ATR_00135G00050	Amborella trichopoda	2e-14	71.2	148	31.76
PP00098G01150	Physcomitrella patens	2e-13	68.9	172	29.07
PP00171G00550	Physcomitrella patens	2e-13	68.9	159	28.30
AT1G11360	Arabidopsis thaliana	1e-12	67.0	167	29.34
PP00007G02290	Physcomitrella patens	2e-12	65.9	157	29.30
OS02G47840	Oryza sativa	1e-11	63.5	140	27.86
AT3G01520	Arabidopsis thaliana	1e-11	63.2	61	42.62
ATR_00165G00230	Amborella trichopoda	3e-11	62.0	55	58.18
PP00034G01480	Physcomitrella patens	5e-11	65.1	161	28.57
VC00G96740	Volvox carteri	5e-11	61.6	156	25.00
OS02G53320	Oryza sativa	8e-11	60.8	153	30.72
CR16G01750	Chlamydomonas reinhardtii	2e-10	60.1	156	25.00
ATR_00045G01790	Amborella trichopoda	2e-10	60.1	163	31.90
OS05G06500	Oryza sativa	2e-10	59.7	58	48.28
PP00400G00060	Physcomitrella patens	3e-10	59.3	160	26.25
CR12G16810	Chlamydomonas reinhardtii	4e-10	58.5	153	29.41
AT5G14680	Arabidopsis thaliana	7e-10	58.5	57	40.35
PP00062G00920	Physcomitrella patens	7e-10	58.2	155	30.32
ATR_00085G00590	Amborella trichopoda	2e-09	57.0	53	52.83
PP00001G01620	Physcomitrella patens	2e-09	57.0	159	27.67
CNC64A_010G02620	Chlorella sp NC64A	2e-09	57.0	173	28.90
PP00447G00080	Physcomitrella patens	3e-09	56.6	147	27.21
PP00304G00100	Physcomitrella patens	4e-09	56.6	140	26.43
MP03G02550	Micromonas pusilla strain CCMP1545	2e-08	54.7	157	26.11
AT3G17020	Arabidopsis thaliana	2e-08	53.9	173	28.32
PI00G60170	Picochlorum sp. SENEW3 (SE3)	7e-08	54.3	169	32.54
AT3G53990	Arabidopsis thaliana	2e-07	51.2	152	26.97
OS05G07810	Oryza sativa	2e-07	52.0	163	32.52
ATR_00072G00070	Amborella trichopoda	9e-07	50.4	153	27.45
MRCC299_11G04620	Micromonas sp RCC299	1e-06	47.4	47	44.68
MRCC299_10G04470	Micromonas sp RCC299	1e-06	50.1	152	28.29
RCC4223.03g04700	Picochlorum_RCC4223	2e-06	48.9	166	24.70
OT_04G00030	Ostreococcus tauri	2e-06	49.7	162	24.07
OS01G63010	Oryza sativa	2e-06	48.5	53	43.40
CR07G10420	Chlamydomonas reinhardtii	2e-06	49.7	168	30.36
PP00133G00110	Physcomitrella patens	3e-06	48.1	153	28.10
ATR_00003G03500	Amborella trichopoda	4e-06	47.0	36	52.78
AT2G21620	Arabidopsis thaliana	7e-06	47.8	143	23.78
OS01G07590	Oryza sativa	7e-06	48.5	74	37.84

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment