|
OM_18G00170 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'OS12G19381' => array(
'gene_id' => 'OS12G19381',
'e_value' => '1e-128',
'bit_score' => '365',
'alignment_length' => '176',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS12G17600' => array(
'gene_id' => 'OS12G17600',
'e_value' => '9e-125',
'bit_score' => '355',
'alignment_length' => '176',
'identity_percentage' => '96.02',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS12G19470' => array(
'gene_id' => 'OS12G19470',
'e_value' => '6e-91',
'bit_score' => '270',
'alignment_length' => '128',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G67090' => array(
'gene_id' => 'AT1G67090',
'e_value' => '8e-79',
'bit_score' => '239',
'alignment_length' => '167',
'identity_percentage' => '67.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G38430' => array(
'gene_id' => 'AT5G38430',
'e_value' => '1e-77',
'bit_score' => '236',
'alignment_length' => '161',
'identity_percentage' => '67.70',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G38420' => array(
'gene_id' => 'AT5G38420',
'e_value' => '2e-77',
'bit_score' => '236',
'alignment_length' => '166',
'identity_percentage' => '65.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G38410' => array(
'gene_id' => 'AT5G38410',
'e_value' => '7e-77',
'bit_score' => '234',
'alignment_length' => '171',
'identity_percentage' => '63.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00180' => array(
'gene_id' => 'ATR_00079G00180',
'e_value' => '2e-71',
'bit_score' => '221',
'alignment_length' => '154',
'identity_percentage' => '64.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00007G01040' => array(
'gene_id' => 'PP00007G01040',
'e_value' => '1e-58',
'bit_score' => '188',
'alignment_length' => '163',
'identity_percentage' => '54.60',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00054G00120' => array(
'gene_id' => 'ATR_00054G00120',
'e_value' => '5e-58',
'bit_score' => '186',
'alignment_length' => '166',
'identity_percentage' => '50.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00012G01130' => array(
'gene_id' => 'PP00012G01130',
'e_value' => '7e-58',
'bit_score' => '186',
'alignment_length' => '158',
'identity_percentage' => '54.43',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00339G00100' => array(
'gene_id' => 'PP00339G00100',
'e_value' => '3e-57',
'bit_score' => '184',
'alignment_length' => '160',
'identity_percentage' => '53.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00056G00690' => array(
'gene_id' => 'PP00056G00690',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00056G00720' => array(
'gene_id' => 'PP00056G00720',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00459G00050' => array(
'gene_id' => 'PP00459G00050',
'e_value' => '5e-57',
'bit_score' => '184',
'alignment_length' => '157',
'identity_percentage' => '55.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00109G00440' => array(
'gene_id' => 'PP00109G00440',
'e_value' => '1e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00352G00090' => array(
'gene_id' => 'PP00352G00090',
'e_value' => '2e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00188G00240' => array(
'gene_id' => 'PP00188G00240',
'e_value' => '3e-56',
'bit_score' => '181',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00046G00130' => array(
'gene_id' => 'PP00046G00130',
'e_value' => '4e-56',
'bit_score' => '181',
'alignment_length' => '161',
'identity_percentage' => '54.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00545G00030' => array(
'gene_id' => 'PP00545G00030',
'e_value' => '6e-56',
'bit_score' => '187',
'alignment_length' => '162',
'identity_percentage' => '54.94',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00251G00310' => array(
'gene_id' => 'PP00251G00310',
'e_value' => '1e-55',
'bit_score' => '180',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00066G00230' => array(
'gene_id' => 'PP00066G00230',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00066G00240' => array(
'gene_id' => 'PP00066G00240',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00161G00130' => array(
'gene_id' => 'PP00161G00130',
'e_value' => '9e-55',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00312G00270' => array(
'gene_id' => 'PP00312G00270',
'e_value' => '1e-54',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '50.00',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS02G05830' => array(
'gene_id' => 'OS02G05830',
'e_value' => '3e-54',
'bit_score' => '178',
'alignment_length' => '136',
'identity_percentage' => '54.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00161G00170' => array(
'gene_id' => 'PP00161G00170',
'e_value' => '4e-54',
'bit_score' => '176',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00352G00250' => array(
'gene_id' => 'PP00352G00250',
'e_value' => '1e-53',
'bit_score' => '175',
'alignment_length' => '142',
'identity_percentage' => '53.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00025G00590' => array(
'gene_id' => 'PP00025G00590',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00025G00610' => array(
'gene_id' => 'PP00025G00610',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00459G00010' => array(
'gene_id' => 'PP00459G00010',
'e_value' => '2e-51',
'bit_score' => '169',
'alignment_length' => '157',
'identity_percentage' => '49.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00204G00510' => array(
'gene_id' => 'PP00204G00510',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00204G00480' => array(
'gene_id' => 'PP00204G00480',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_001G05380' => array(
'gene_id' => 'CNC64A_001G05380',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_001G05370' => array(
'gene_id' => 'CNC64A_001G05370',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'AP00G20260' => array(
'gene_id' => 'AP00G20260',
'e_value' => '1e-44',
'bit_score' => '152',
'alignment_length' => '177',
'identity_percentage' => '41.81',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'AC00G16230' => array(
'gene_id' => 'AC00G16230',
'e_value' => '8e-44',
'bit_score' => '150',
'alignment_length' => '141',
'identity_percentage' => '47.52',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00227G00680' => array(
'gene_id' => 'PP00227G00680',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '151',
'identity_percentage' => '49.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G01940' => array(
'gene_id' => 'ORCC809_17G01940',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G01930' => array(
'gene_id' => 'ORCC809_17G01930',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G00260' => array(
'gene_id' => 'BPRRCC1105_09G00260',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '137',
'identity_percentage' => '48.18',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'PI00G60200' => array(
'gene_id' => 'PI00G60200',
'e_value' => '1e-41',
'bit_score' => '144',
'alignment_length' => '178',
'identity_percentage' => '41.01',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_03G08530' => array(
'gene_id' => 'MRCC299_03G08530',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '155',
'identity_percentage' => '41.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G00270' => array(
'gene_id' => 'BPRRCC1105_09G00270',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '129',
'identity_percentage' => '49.61',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28840' => array(
'gene_id' => 'VC00G28840',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '181',
'identity_percentage' => '42.54',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CV00G54720' => array(
'gene_id' => 'CV00G54720',
'e_value' => '3e-41',
'bit_score' => '144',
'alignment_length' => '176',
'identity_percentage' => '43.18',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28850' => array(
'gene_id' => 'VC00G28850',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '175',
'identity_percentage' => '40.00',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28870' => array(
'gene_id' => 'VC00G28870',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '178',
'identity_percentage' => '40.45',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_03G08520' => array(
'gene_id' => 'MRCC299_03G08520',
'e_value' => '5e-41',
'bit_score' => '142',
'alignment_length' => '153',
'identity_percentage' => '41.83',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28860' => array(
'gene_id' => 'VC00G28860',
'e_value' => '6e-41',
'bit_score' => '142',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g01470' => array(
'gene_id' => 'RCC4223.02g01470',
'e_value' => '1e-40',
'bit_score' => '141',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'MP17G02670' => array(
'gene_id' => 'MP17G02670',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28830' => array(
'gene_id' => 'VC00G28830',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28910' => array(
'gene_id' => 'VC00G28910',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '140',
'identity_percentage' => '45.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'MP17G02660' => array(
'gene_id' => 'MP17G02660',
'e_value' => '3e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PI00G53190' => array(
'gene_id' => 'PI00G53190',
'e_value' => '3e-40',
'bit_score' => '140',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G01930' => array(
'gene_id' => 'OT_18G01930',
'e_value' => '5e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '44.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'OL17G01930' => array(
'gene_id' => 'OL17G01930',
'e_value' => '6e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '43.48',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28880' => array(
'gene_id' => 'VC00G28880',
'e_value' => '7e-40',
'bit_score' => '139',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR02G11640' => array(
'gene_id' => 'CR02G11640',
'e_value' => '1e-39',
'bit_score' => '139',
'alignment_length' => '126',
'identity_percentage' => '49.21',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CR02G11650' => array(
'gene_id' => 'CR02G11650',
'e_value' => '6e-39',
'bit_score' => '137',
'alignment_length' => '131',
'identity_percentage' => '46.56',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G01940' => array(
'gene_id' => 'OT_18G01940',
'e_value' => '1e-38',
'bit_score' => '140',
'alignment_length' => '145',
'identity_percentage' => '42.76',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G00170' => array(
'gene_id' => 'OM_18G00170',
'e_value' => '2e-38',
'bit_score' => '144',
'alignment_length' => '139',
'identity_percentage' => '46.04',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G00240' => array(
'gene_id' => 'BPRRCC1105_09G00240',
'e_value' => '2e-38',
'bit_score' => '134',
'alignment_length' => '124',
'identity_percentage' => '48.39',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g06940' => array(
'gene_id' => 'RCC4223.02g06940',
'e_value' => '1e-37',
'bit_score' => '132',
'alignment_length' => '118',
'identity_percentage' => '47.46',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'MP17G02680' => array(
'gene_id' => 'MP17G02680',
'e_value' => '2e-37',
'bit_score' => '134',
'alignment_length' => '116',
'identity_percentage' => '46.55',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OL17G01940' => array(
'gene_id' => 'OL17G01940',
'e_value' => '8e-36',
'bit_score' => '129',
'alignment_length' => '118',
'identity_percentage' => '44.07',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OL17G01920' => array(
'gene_id' => 'OL17G01920',
'e_value' => '2e-35',
'bit_score' => '126',
'alignment_length' => '118',
'identity_percentage' => '43.22',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PP00374G00180' => array(
'gene_id' => 'PP00374G00180',
'e_value' => '2e-31',
'bit_score' => '115',
'alignment_length' => '90',
'identity_percentage' => '53.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G00180' => array(
'gene_id' => 'OM_18G00180',
'e_value' => '3e-19',
'bit_score' => '82.8',
'alignment_length' => '58',
'identity_percentage' => '53.45',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'PP00056G00680' => array(
'gene_id' => 'PP00056G00680',
'e_value' => '2e-17',
'bit_score' => '77.8',
'alignment_length' => '52',
'identity_percentage' => '57.69',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00374G00140' => array(
'gene_id' => 'PP00374G00140',
'e_value' => '5e-17',
'bit_score' => '76.3',
'alignment_length' => '52',
'identity_percentage' => '55.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00459G00020' => array(
'gene_id' => 'PP00459G00020',
'e_value' => '6e-16',
'bit_score' => '75.1',
'alignment_length' => '93',
'identity_percentage' => '39.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00051G01450' => array(
'gene_id' => 'PP00051G01450',
'e_value' => '3e-14',
'bit_score' => '68.9',
'alignment_length' => '52',
'identity_percentage' => '51.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ccr03540' => array(
'gene_id' => 'ccr03540',
'e_value' => '4e-13',
'bit_score' => '67.4',
'alignment_length' => '114',
'identity_percentage' => '31.58',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'CMCG00140' => array(
'gene_id' => 'CMCG00140',
'e_value' => '1e-12',
'bit_score' => '66.2',
'alignment_length' => '108',
'identity_percentage' => '27.78',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'AACG00900' => array(
'gene_id' => 'AACG00900',
'e_value' => '4e-11',
'bit_score' => '62.0',
'alignment_length' => '108',
'identity_percentage' => '30.56',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'TPCG00230' => array(
'gene_id' => 'TPCG00230',
'e_value' => '3e-09',
'bit_score' => '56.2',
'alignment_length' => '107',
'identity_percentage' => '30.84',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'PP00015G01310' => array(
'gene_id' => 'PP00015G01310',
'e_value' => '3e-08',
'bit_score' => '52.0',
'alignment_length' => '47',
'identity_percentage' => '51.06',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'osa' => array(
(int) 0 => 'OS12G19381',
(int) 1 => 'OS12G17600',
(int) 2 => 'OS12G19470',
(int) 3 => 'OS02G05830'
),
'ath' => array(
(int) 0 => 'AT1G67090',
(int) 1 => 'AT5G38430',
(int) 2 => 'AT5G38420',
(int) 3 => 'AT5G38410'
),
'atr' => array(
(int) 0 => 'ATR_00079G00180',
(int) 1 => 'ATR_00054G00120'
),
'ppa' => array(
(int) 0 => 'PP00007G01040',
(int) 1 => 'PP00012G01130',
(int) 2 => 'PP00339G00100',
(int) 3 => 'PP00056G00690',
(int) 4 => 'PP00056G00720',
(int) 5 => 'PP00459G00050',
(int) 6 => 'PP00109G00440',
(int) 7 => 'PP00352G00090',
(int) 8 => 'PP00188G00240',
(int) 9 => 'PP00046G00130',
(int) 10 => 'PP00545G00030',
(int) 11 => 'PP00251G00310',
(int) 12 => 'PP00066G00230',
(int) 13 => 'PP00066G00240',
(int) 14 => 'PP00161G00130',
(int) 15 => 'PP00312G00270',
(int) 16 => 'PP00161G00170',
(int) 17 => 'PP00352G00250',
(int) 18 => 'PP00025G00590',
(int) 19 => 'PP00025G00610',
(int) 20 => 'PP00459G00010',
(int) 21 => 'PP00204G00510',
(int) 22 => 'PP00204G00480',
(int) 23 => 'PP00227G00680',
(int) 24 => 'PP00374G00180',
(int) 25 => 'PP00056G00680',
(int) 26 => 'PP00374G00140',
(int) 27 => 'PP00459G00020',
(int) 28 => 'PP00051G01450',
(int) 29 => 'PP00015G01310'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_001G05380',
(int) 1 => 'CNC64A_001G05370'
),
'apr' => array(
(int) 0 => 'AP00G20260'
),
'acg' => array(
(int) 0 => 'AC00G16230'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G01940',
(int) 1 => 'ORCC809_17G01930'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G00260',
(int) 1 => 'BPRRCC1105_09G00270',
(int) 2 => 'BPRRCC1105_09G00240'
),
'pse3' => array(
(int) 0 => 'PI00G60200',
(int) 1 => 'PI00G53190'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_03G08530',
(int) 1 => 'MRCC299_03G08520'
),
'vca' => array(
(int) 0 => 'VC00G28840',
(int) 1 => 'VC00G28850',
(int) 2 => 'VC00G28870',
(int) 3 => 'VC00G28860',
(int) 4 => 'VC00G28830',
(int) 5 => 'VC00G28910',
(int) 6 => 'VC00G28880'
),
'cvu' => array(
(int) 0 => 'CV00G54720'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.02g01470',
(int) 1 => 'RCC4223.02g06940'
),
'mpu' => array(
(int) 0 => 'MP17G02670',
(int) 1 => 'MP17G02660',
(int) 2 => 'MP17G02680'
),
'ota' => array(
(int) 0 => 'OT_18G01930',
(int) 1 => 'OT_18G01940'
),
'olu' => array(
(int) 0 => 'OL17G01930',
(int) 1 => 'OL17G01940',
(int) 2 => 'OL17G01920'
),
'cre' => array(
(int) 0 => 'CR02G11640',
(int) 1 => 'CR02G11650'
),
'ome' => array(
(int) 0 => 'OM_18G00180'
),
'ccr' => array(
(int) 0 => 'ccr03540'
),
'cme' => array(
(int) 0 => 'CMCG00140'
),
'aan' => array(
(int) 0 => 'AACG00900'
),
'tps' => array(
(int) 0 => 'TPCG00230'
)
),
'gene_id' => 'OS12G19381',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'OS12G19381',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'BPRRCC1105_06G04850',
'gf_placeholder' => 'HOM03P015778',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'OS12G19381' => array(
'gene_id' => 'OS12G19381',
'e_value' => '1e-128',
'bit_score' => '365',
'alignment_length' => '176',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OS12G17600' => array(
'gene_id' => 'OS12G17600',
'e_value' => '9e-125',
'bit_score' => '355',
'alignment_length' => '176',
'identity_percentage' => '96.02',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OS12G19470' => array(
'gene_id' => 'OS12G19470',
'e_value' => '6e-91',
'bit_score' => '270',
'alignment_length' => '128',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT1G67090' => array(
'gene_id' => 'AT1G67090',
'e_value' => '8e-79',
'bit_score' => '239',
'alignment_length' => '167',
'identity_percentage' => '67.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT5G38430' => array(
'gene_id' => 'AT5G38430',
'e_value' => '1e-77',
'bit_score' => '236',
'alignment_length' => '161',
'identity_percentage' => '67.70',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT5G38420' => array(
'gene_id' => 'AT5G38420',
'e_value' => '2e-77',
'bit_score' => '236',
'alignment_length' => '166',
'identity_percentage' => '65.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT5G38410' => array(
'gene_id' => 'AT5G38410',
'e_value' => '7e-77',
'bit_score' => '234',
'alignment_length' => '171',
'identity_percentage' => '63.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ATR_00079G00180' => array(
'gene_id' => 'ATR_00079G00180',
'e_value' => '2e-71',
'bit_score' => '221',
'alignment_length' => '154',
'identity_percentage' => '64.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00007G01040' => array(
'gene_id' => 'PP00007G01040',
'e_value' => '1e-58',
'bit_score' => '188',
'alignment_length' => '163',
'identity_percentage' => '54.60',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ATR_00054G00120' => array(
'gene_id' => 'ATR_00054G00120',
'e_value' => '5e-58',
'bit_score' => '186',
'alignment_length' => '166',
'identity_percentage' => '50.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00012G01130' => array(
'gene_id' => 'PP00012G01130',
'e_value' => '7e-58',
'bit_score' => '186',
'alignment_length' => '158',
'identity_percentage' => '54.43',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00339G00100' => array(
'gene_id' => 'PP00339G00100',
'e_value' => '3e-57',
'bit_score' => '184',
'alignment_length' => '160',
'identity_percentage' => '53.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00056G00690' => array(
'gene_id' => 'PP00056G00690',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00056G00720' => array(
'gene_id' => 'PP00056G00720',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00459G00050' => array(
'gene_id' => 'PP00459G00050',
'e_value' => '5e-57',
'bit_score' => '184',
'alignment_length' => '157',
'identity_percentage' => '55.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00109G00440' => array(
'gene_id' => 'PP00109G00440',
'e_value' => '1e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00352G00090' => array(
'gene_id' => 'PP00352G00090',
'e_value' => '2e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00188G00240' => array(
'gene_id' => 'PP00188G00240',
'e_value' => '3e-56',
'bit_score' => '181',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00046G00130' => array(
'gene_id' => 'PP00046G00130',
'e_value' => '4e-56',
'bit_score' => '181',
'alignment_length' => '161',
'identity_percentage' => '54.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00545G00030' => array(
'gene_id' => 'PP00545G00030',
'e_value' => '6e-56',
'bit_score' => '187',
'alignment_length' => '162',
'identity_percentage' => '54.94',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00251G00310' => array(
'gene_id' => 'PP00251G00310',
'e_value' => '1e-55',
'bit_score' => '180',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00066G00230' => array(
'gene_id' => 'PP00066G00230',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00066G00240' => array(
'gene_id' => 'PP00066G00240',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00161G00130' => array(
'gene_id' => 'PP00161G00130',
'e_value' => '9e-55',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00312G00270' => array(
'gene_id' => 'PP00312G00270',
'e_value' => '1e-54',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '50.00',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OS02G05830' => array(
'gene_id' => 'OS02G05830',
'e_value' => '3e-54',
'bit_score' => '178',
'alignment_length' => '136',
'identity_percentage' => '54.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00161G00170' => array(
'gene_id' => 'PP00161G00170',
'e_value' => '4e-54',
'bit_score' => '176',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00352G00250' => array(
'gene_id' => 'PP00352G00250',
'e_value' => '1e-53',
'bit_score' => '175',
'alignment_length' => '142',
'identity_percentage' => '53.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00025G00590' => array(
'gene_id' => 'PP00025G00590',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00025G00610' => array(
'gene_id' => 'PP00025G00610',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00459G00010' => array(
'gene_id' => 'PP00459G00010',
'e_value' => '2e-51',
'bit_score' => '169',
'alignment_length' => '157',
'identity_percentage' => '49.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00204G00510' => array(
'gene_id' => 'PP00204G00510',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00204G00480' => array(
'gene_id' => 'PP00204G00480',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CNC64A_001G05380' => array(
'gene_id' => 'CNC64A_001G05380',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CNC64A_001G05370' => array(
'gene_id' => 'CNC64A_001G05370',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AP00G20260' => array(
'gene_id' => 'AP00G20260',
'e_value' => '1e-44',
'bit_score' => '152',
'alignment_length' => '177',
'identity_percentage' => '41.81',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AC00G16230' => array(
'gene_id' => 'AC00G16230',
'e_value' => '8e-44',
'bit_score' => '150',
'alignment_length' => '141',
'identity_percentage' => '47.52',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00227G00680' => array(
'gene_id' => 'PP00227G00680',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '151',
'identity_percentage' => '49.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ORCC809_17G01940' => array(
'gene_id' => 'ORCC809_17G01940',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ORCC809_17G01930' => array(
'gene_id' => 'ORCC809_17G01930',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'BPRRCC1105_09G00260' => array(
'gene_id' => 'BPRRCC1105_09G00260',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '137',
'identity_percentage' => '48.18',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PI00G60200' => array(
'gene_id' => 'PI00G60200',
'e_value' => '1e-41',
'bit_score' => '144',
'alignment_length' => '178',
'identity_percentage' => '41.01',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MRCC299_03G08530' => array(
'gene_id' => 'MRCC299_03G08530',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '155',
'identity_percentage' => '41.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'BPRRCC1105_09G00270' => array(
'gene_id' => 'BPRRCC1105_09G00270',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '129',
'identity_percentage' => '49.61',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28840' => array(
'gene_id' => 'VC00G28840',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '181',
'identity_percentage' => '42.54',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CV00G54720' => array(
'gene_id' => 'CV00G54720',
'e_value' => '3e-41',
'bit_score' => '144',
'alignment_length' => '176',
'identity_percentage' => '43.18',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28850' => array(
'gene_id' => 'VC00G28850',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '175',
'identity_percentage' => '40.00',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28870' => array(
'gene_id' => 'VC00G28870',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '178',
'identity_percentage' => '40.45',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MRCC299_03G08520' => array(
'gene_id' => 'MRCC299_03G08520',
'e_value' => '5e-41',
'bit_score' => '142',
'alignment_length' => '153',
'identity_percentage' => '41.83',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28860' => array(
'gene_id' => 'VC00G28860',
'e_value' => '6e-41',
'bit_score' => '142',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'RCC4223.02g01470' => array(
'gene_id' => 'RCC4223.02g01470',
'e_value' => '1e-40',
'bit_score' => '141',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MP17G02670' => array(
'gene_id' => 'MP17G02670',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28830' => array(
'gene_id' => 'VC00G28830',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28910' => array(
'gene_id' => 'VC00G28910',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '140',
'identity_percentage' => '45.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MP17G02660' => array(
'gene_id' => 'MP17G02660',
'e_value' => '3e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PI00G53190' => array(
'gene_id' => 'PI00G53190',
'e_value' => '3e-40',
'bit_score' => '140',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OT_18G01930' => array(
'gene_id' => 'OT_18G01930',
'e_value' => '5e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '44.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OL17G01930' => array(
'gene_id' => 'OL17G01930',
'e_value' => '6e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '43.48',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28880' => array(
'gene_id' => 'VC00G28880',
'e_value' => '7e-40',
'bit_score' => '139',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CR02G11640' => array(
'gene_id' => 'CR02G11640',
'e_value' => '1e-39',
'bit_score' => '139',
'alignment_length' => '126',
'identity_percentage' => '49.21',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CR02G11650' => array(
'gene_id' => 'CR02G11650',
'e_value' => '6e-39',
'bit_score' => '137',
'alignment_length' => '131',
'identity_percentage' => '46.56',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OT_18G01940' => array(
'gene_id' => 'OT_18G01940',
'e_value' => '1e-38',
'bit_score' => '140',
'alignment_length' => '145',
'identity_percentage' => '42.76',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OM_18G00170' => array(
'gene_id' => 'OM_18G00170',
'e_value' => '2e-38',
'bit_score' => '144',
'alignment_length' => '139',
'identity_percentage' => '46.04',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'BPRRCC1105_09G00240' => array(
'gene_id' => 'BPRRCC1105_09G00240',
'e_value' => '2e-38',
'bit_score' => '134',
'alignment_length' => '124',
'identity_percentage' => '48.39',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'RCC4223.02g06940' => array(
'gene_id' => 'RCC4223.02g06940',
'e_value' => '1e-37',
'bit_score' => '132',
'alignment_length' => '118',
'identity_percentage' => '47.46',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MP17G02680' => array(
'gene_id' => 'MP17G02680',
'e_value' => '2e-37',
'bit_score' => '134',
'alignment_length' => '116',
'identity_percentage' => '46.55',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OL17G01940' => array(
'gene_id' => 'OL17G01940',
'e_value' => '8e-36',
'bit_score' => '129',
'alignment_length' => '118',
'identity_percentage' => '44.07',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P047425'
)
),
'OL17G01920' => array(
'gene_id' => 'OL17G01920',
'e_value' => '2e-35',
'bit_score' => '126',
'alignment_length' => '118',
'identity_percentage' => '43.22',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P047425'
)
),
'PP00374G00180' => array(
'gene_id' => 'PP00374G00180',
'e_value' => '2e-31',
'bit_score' => '115',
'alignment_length' => '90',
'identity_percentage' => '53.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OM_18G00180' => array(
'gene_id' => 'OM_18G00180',
'e_value' => '3e-19',
'bit_score' => '82.8',
'alignment_length' => '58',
'identity_percentage' => '53.45',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P097537'
)
),
'PP00056G00680' => array(
'gene_id' => 'PP00056G00680',
'e_value' => '2e-17',
'bit_score' => '77.8',
'alignment_length' => '52',
'identity_percentage' => '57.69',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P048489'
)
),
'PP00374G00140' => array(
'gene_id' => 'PP00374G00140',
'e_value' => '5e-17',
'bit_score' => '76.3',
'alignment_length' => '52',
'identity_percentage' => '55.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P048489'
)
),
'PP00459G00020' => array(
'gene_id' => 'PP00459G00020',
'e_value' => '6e-16',
'bit_score' => '75.1',
'alignment_length' => '93',
'identity_percentage' => '39.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00051G01450' => array(
'gene_id' => 'PP00051G01450',
'e_value' => '3e-14',
'bit_score' => '68.9',
'alignment_length' => '52',
'identity_percentage' => '51.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P168770'
)
),
'ccr03540' => array(
'gene_id' => 'ccr03540',
'e_value' => '4e-13',
'bit_score' => '67.4',
'alignment_length' => '114',
'identity_percentage' => '31.58',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CMCG00140' => array(
'gene_id' => 'CMCG00140',
'e_value' => '1e-12',
'bit_score' => '66.2',
'alignment_length' => '108',
'identity_percentage' => '27.78',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AACG00900' => array(
'gene_id' => 'AACG00900',
'e_value' => '4e-11',
'bit_score' => '62.0',
'alignment_length' => '108',
'identity_percentage' => '30.56',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'TPCG00230' => array(
'gene_id' => 'TPCG00230',
'e_value' => '3e-09',
'bit_score' => '56.2',
'alignment_length' => '107',
'identity_percentage' => '30.84',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00015G01310' => array(
'gene_id' => 'PP00015G01310',
'e_value' => '3e-08',
'bit_score' => '52.0',
'alignment_length' => '47',
'identity_percentage' => '51.06',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P183783'
)
)
)
$similarity_hits_species = array(
'osa' => array(
(int) 0 => 'OS12G19381',
(int) 1 => 'OS12G17600',
(int) 2 => 'OS12G19470',
(int) 3 => 'OS02G05830'
),
'ath' => array(
(int) 0 => 'AT1G67090',
(int) 1 => 'AT5G38430',
(int) 2 => 'AT5G38420',
(int) 3 => 'AT5G38410'
),
'atr' => array(
(int) 0 => 'ATR_00079G00180',
(int) 1 => 'ATR_00054G00120'
),
'ppa' => array(
(int) 0 => 'PP00007G01040',
(int) 1 => 'PP00012G01130',
(int) 2 => 'PP00339G00100',
(int) 3 => 'PP00056G00690',
(int) 4 => 'PP00056G00720',
(int) 5 => 'PP00459G00050',
(int) 6 => 'PP00109G00440',
(int) 7 => 'PP00352G00090',
(int) 8 => 'PP00188G00240',
(int) 9 => 'PP00046G00130',
(int) 10 => 'PP00545G00030',
(int) 11 => 'PP00251G00310',
(int) 12 => 'PP00066G00230',
(int) 13 => 'PP00066G00240',
(int) 14 => 'PP00161G00130',
(int) 15 => 'PP00312G00270',
(int) 16 => 'PP00161G00170',
(int) 17 => 'PP00352G00250',
(int) 18 => 'PP00025G00590',
(int) 19 => 'PP00025G00610',
(int) 20 => 'PP00459G00010',
(int) 21 => 'PP00204G00510',
(int) 22 => 'PP00204G00480',
(int) 23 => 'PP00227G00680',
(int) 24 => 'PP00374G00180',
(int) 25 => 'PP00056G00680',
(int) 26 => 'PP00374G00140',
(int) 27 => 'PP00459G00020',
(int) 28 => 'PP00051G01450',
(int) 29 => 'PP00015G01310'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_001G05380',
(int) 1 => 'CNC64A_001G05370'
),
'apr' => array(
(int) 0 => 'AP00G20260'
),
'acg' => array(
(int) 0 => 'AC00G16230'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G01940',
(int) 1 => 'ORCC809_17G01930'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G00260',
(int) 1 => 'BPRRCC1105_09G00270',
(int) 2 => 'BPRRCC1105_09G00240'
),
'pse3' => array(
(int) 0 => 'PI00G60200',
(int) 1 => 'PI00G53190'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_03G08530',
(int) 1 => 'MRCC299_03G08520'
),
'vca' => array(
(int) 0 => 'VC00G28840',
(int) 1 => 'VC00G28850',
(int) 2 => 'VC00G28870',
(int) 3 => 'VC00G28860',
(int) 4 => 'VC00G28830',
(int) 5 => 'VC00G28910',
(int) 6 => 'VC00G28880'
),
'cvu' => array(
(int) 0 => 'CV00G54720'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.02g01470',
(int) 1 => 'RCC4223.02g06940'
),
'mpu' => array(
(int) 0 => 'MP17G02670',
(int) 1 => 'MP17G02660',
(int) 2 => 'MP17G02680'
),
'ota' => array(
(int) 0 => 'OT_18G01930',
(int) 1 => 'OT_18G01940'
),
'olu' => array(
(int) 0 => 'OL17G01930',
(int) 1 => 'OL17G01940',
(int) 2 => 'OL17G01920'
),
'cre' => array(
(int) 0 => 'CR02G11640',
(int) 1 => 'CR02G11650'
),
'ome' => array(
(int) 0 => 'OM_18G00180'
),
'ccr' => array(
(int) 0 => 'ccr03540'
),
'cme' => array(
(int) 0 => 'CMCG00140'
),
'aan' => array(
(int) 0 => 'AACG00900'
),
'tps' => array(
(int) 0 => 'TPCG00230'
)
)
$gene_id = 'OS12G19381'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'OS12G19381'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'BPRRCC1105_06G04850'
$gf_placeholder = 'HOM03P015778'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'OM_18G00170',
'e_value' => '2e-38',
'bit_score' => '144',
'alignment_length' => '139',
'identity_percentage' => '46.04',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
)
$checked = null
$similarity_hit_gene = 'OM_18G00170'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'OS12G19381' => array(
'gene_id' => 'OS12G19381',
'e_value' => '1e-128',
'bit_score' => '365',
'alignment_length' => '176',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS12G17600' => array(
'gene_id' => 'OS12G17600',
'e_value' => '9e-125',
'bit_score' => '355',
'alignment_length' => '176',
'identity_percentage' => '96.02',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS12G19470' => array(
'gene_id' => 'OS12G19470',
'e_value' => '6e-91',
'bit_score' => '270',
'alignment_length' => '128',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G67090' => array(
'gene_id' => 'AT1G67090',
'e_value' => '8e-79',
'bit_score' => '239',
'alignment_length' => '167',
'identity_percentage' => '67.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G38430' => array(
'gene_id' => 'AT5G38430',
'e_value' => '1e-77',
'bit_score' => '236',
'alignment_length' => '161',
'identity_percentage' => '67.70',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G38420' => array(
'gene_id' => 'AT5G38420',
'e_value' => '2e-77',
'bit_score' => '236',
'alignment_length' => '166',
'identity_percentage' => '65.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G38410' => array(
'gene_id' => 'AT5G38410',
'e_value' => '7e-77',
'bit_score' => '234',
'alignment_length' => '171',
'identity_percentage' => '63.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00180' => array(
'gene_id' => 'ATR_00079G00180',
'e_value' => '2e-71',
'bit_score' => '221',
'alignment_length' => '154',
'identity_percentage' => '64.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00007G01040' => array(
'gene_id' => 'PP00007G01040',
'e_value' => '1e-58',
'bit_score' => '188',
'alignment_length' => '163',
'identity_percentage' => '54.60',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00054G00120' => array(
'gene_id' => 'ATR_00054G00120',
'e_value' => '5e-58',
'bit_score' => '186',
'alignment_length' => '166',
'identity_percentage' => '50.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00012G01130' => array(
'gene_id' => 'PP00012G01130',
'e_value' => '7e-58',
'bit_score' => '186',
'alignment_length' => '158',
'identity_percentage' => '54.43',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00339G00100' => array(
'gene_id' => 'PP00339G00100',
'e_value' => '3e-57',
'bit_score' => '184',
'alignment_length' => '160',
'identity_percentage' => '53.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00056G00690' => array(
'gene_id' => 'PP00056G00690',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00056G00720' => array(
'gene_id' => 'PP00056G00720',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00459G00050' => array(
'gene_id' => 'PP00459G00050',
'e_value' => '5e-57',
'bit_score' => '184',
'alignment_length' => '157',
'identity_percentage' => '55.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00109G00440' => array(
'gene_id' => 'PP00109G00440',
'e_value' => '1e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00352G00090' => array(
'gene_id' => 'PP00352G00090',
'e_value' => '2e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00188G00240' => array(
'gene_id' => 'PP00188G00240',
'e_value' => '3e-56',
'bit_score' => '181',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00046G00130' => array(
'gene_id' => 'PP00046G00130',
'e_value' => '4e-56',
'bit_score' => '181',
'alignment_length' => '161',
'identity_percentage' => '54.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00545G00030' => array(
'gene_id' => 'PP00545G00030',
'e_value' => '6e-56',
'bit_score' => '187',
'alignment_length' => '162',
'identity_percentage' => '54.94',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00251G00310' => array(
'gene_id' => 'PP00251G00310',
'e_value' => '1e-55',
'bit_score' => '180',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00066G00230' => array(
'gene_id' => 'PP00066G00230',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00066G00240' => array(
'gene_id' => 'PP00066G00240',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00161G00130' => array(
'gene_id' => 'PP00161G00130',
'e_value' => '9e-55',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00312G00270' => array(
'gene_id' => 'PP00312G00270',
'e_value' => '1e-54',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '50.00',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS02G05830' => array(
'gene_id' => 'OS02G05830',
'e_value' => '3e-54',
'bit_score' => '178',
'alignment_length' => '136',
'identity_percentage' => '54.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00161G00170' => array(
'gene_id' => 'PP00161G00170',
'e_value' => '4e-54',
'bit_score' => '176',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00352G00250' => array(
'gene_id' => 'PP00352G00250',
'e_value' => '1e-53',
'bit_score' => '175',
'alignment_length' => '142',
'identity_percentage' => '53.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00025G00590' => array(
'gene_id' => 'PP00025G00590',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00025G00610' => array(
'gene_id' => 'PP00025G00610',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00459G00010' => array(
'gene_id' => 'PP00459G00010',
'e_value' => '2e-51',
'bit_score' => '169',
'alignment_length' => '157',
'identity_percentage' => '49.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00204G00510' => array(
'gene_id' => 'PP00204G00510',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00204G00480' => array(
'gene_id' => 'PP00204G00480',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_001G05380' => array(
'gene_id' => 'CNC64A_001G05380',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_001G05370' => array(
'gene_id' => 'CNC64A_001G05370',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'AP00G20260' => array(
'gene_id' => 'AP00G20260',
'e_value' => '1e-44',
'bit_score' => '152',
'alignment_length' => '177',
'identity_percentage' => '41.81',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'AC00G16230' => array(
'gene_id' => 'AC00G16230',
'e_value' => '8e-44',
'bit_score' => '150',
'alignment_length' => '141',
'identity_percentage' => '47.52',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00227G00680' => array(
'gene_id' => 'PP00227G00680',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '151',
'identity_percentage' => '49.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G01940' => array(
'gene_id' => 'ORCC809_17G01940',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G01930' => array(
'gene_id' => 'ORCC809_17G01930',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G00260' => array(
'gene_id' => 'BPRRCC1105_09G00260',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '137',
'identity_percentage' => '48.18',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'PI00G60200' => array(
'gene_id' => 'PI00G60200',
'e_value' => '1e-41',
'bit_score' => '144',
'alignment_length' => '178',
'identity_percentage' => '41.01',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_03G08530' => array(
'gene_id' => 'MRCC299_03G08530',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '155',
'identity_percentage' => '41.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G00270' => array(
'gene_id' => 'BPRRCC1105_09G00270',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '129',
'identity_percentage' => '49.61',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28840' => array(
'gene_id' => 'VC00G28840',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '181',
'identity_percentage' => '42.54',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CV00G54720' => array(
'gene_id' => 'CV00G54720',
'e_value' => '3e-41',
'bit_score' => '144',
'alignment_length' => '176',
'identity_percentage' => '43.18',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28850' => array(
'gene_id' => 'VC00G28850',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '175',
'identity_percentage' => '40.00',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28870' => array(
'gene_id' => 'VC00G28870',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '178',
'identity_percentage' => '40.45',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_03G08520' => array(
'gene_id' => 'MRCC299_03G08520',
'e_value' => '5e-41',
'bit_score' => '142',
'alignment_length' => '153',
'identity_percentage' => '41.83',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28860' => array(
'gene_id' => 'VC00G28860',
'e_value' => '6e-41',
'bit_score' => '142',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g01470' => array(
'gene_id' => 'RCC4223.02g01470',
'e_value' => '1e-40',
'bit_score' => '141',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'MP17G02670' => array(
'gene_id' => 'MP17G02670',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28830' => array(
'gene_id' => 'VC00G28830',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28910' => array(
'gene_id' => 'VC00G28910',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '140',
'identity_percentage' => '45.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'MP17G02660' => array(
'gene_id' => 'MP17G02660',
'e_value' => '3e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PI00G53190' => array(
'gene_id' => 'PI00G53190',
'e_value' => '3e-40',
'bit_score' => '140',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G01930' => array(
'gene_id' => 'OT_18G01930',
'e_value' => '5e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '44.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'OL17G01930' => array(
'gene_id' => 'OL17G01930',
'e_value' => '6e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '43.48',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G28880' => array(
'gene_id' => 'VC00G28880',
'e_value' => '7e-40',
'bit_score' => '139',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR02G11640' => array(
'gene_id' => 'CR02G11640',
'e_value' => '1e-39',
'bit_score' => '139',
'alignment_length' => '126',
'identity_percentage' => '49.21',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CR02G11650' => array(
'gene_id' => 'CR02G11650',
'e_value' => '6e-39',
'bit_score' => '137',
'alignment_length' => '131',
'identity_percentage' => '46.56',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G01940' => array(
'gene_id' => 'OT_18G01940',
'e_value' => '1e-38',
'bit_score' => '140',
'alignment_length' => '145',
'identity_percentage' => '42.76',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G00170' => array(
'gene_id' => 'OM_18G00170',
'e_value' => '2e-38',
'bit_score' => '144',
'alignment_length' => '139',
'identity_percentage' => '46.04',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G00240' => array(
'gene_id' => 'BPRRCC1105_09G00240',
'e_value' => '2e-38',
'bit_score' => '134',
'alignment_length' => '124',
'identity_percentage' => '48.39',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g06940' => array(
'gene_id' => 'RCC4223.02g06940',
'e_value' => '1e-37',
'bit_score' => '132',
'alignment_length' => '118',
'identity_percentage' => '47.46',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'MP17G02680' => array(
'gene_id' => 'MP17G02680',
'e_value' => '2e-37',
'bit_score' => '134',
'alignment_length' => '116',
'identity_percentage' => '46.55',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OL17G01940' => array(
'gene_id' => 'OL17G01940',
'e_value' => '8e-36',
'bit_score' => '129',
'alignment_length' => '118',
'identity_percentage' => '44.07',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OL17G01920' => array(
'gene_id' => 'OL17G01920',
'e_value' => '2e-35',
'bit_score' => '126',
'alignment_length' => '118',
'identity_percentage' => '43.22',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PP00374G00180' => array(
'gene_id' => 'PP00374G00180',
'e_value' => '2e-31',
'bit_score' => '115',
'alignment_length' => '90',
'identity_percentage' => '53.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G00180' => array(
'gene_id' => 'OM_18G00180',
'e_value' => '3e-19',
'bit_score' => '82.8',
'alignment_length' => '58',
'identity_percentage' => '53.45',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'PP00056G00680' => array(
'gene_id' => 'PP00056G00680',
'e_value' => '2e-17',
'bit_score' => '77.8',
'alignment_length' => '52',
'identity_percentage' => '57.69',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00374G00140' => array(
'gene_id' => 'PP00374G00140',
'e_value' => '5e-17',
'bit_score' => '76.3',
'alignment_length' => '52',
'identity_percentage' => '55.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00459G00020' => array(
'gene_id' => 'PP00459G00020',
'e_value' => '6e-16',
'bit_score' => '75.1',
'alignment_length' => '93',
'identity_percentage' => '39.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00051G01450' => array(
'gene_id' => 'PP00051G01450',
'e_value' => '3e-14',
'bit_score' => '68.9',
'alignment_length' => '52',
'identity_percentage' => '51.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ccr03540' => array(
'gene_id' => 'ccr03540',
'e_value' => '4e-13',
'bit_score' => '67.4',
'alignment_length' => '114',
'identity_percentage' => '31.58',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'CMCG00140' => array(
'gene_id' => 'CMCG00140',
'e_value' => '1e-12',
'bit_score' => '66.2',
'alignment_length' => '108',
'identity_percentage' => '27.78',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'AACG00900' => array(
'gene_id' => 'AACG00900',
'e_value' => '4e-11',
'bit_score' => '62.0',
'alignment_length' => '108',
'identity_percentage' => '30.56',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'TPCG00230' => array(
'gene_id' => 'TPCG00230',
'e_value' => '3e-09',
'bit_score' => '56.2',
'alignment_length' => '107',
'identity_percentage' => '30.84',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'PP00015G01310' => array(
'gene_id' => 'PP00015G01310',
'e_value' => '3e-08',
'bit_score' => '52.0',
'alignment_length' => '47',
'identity_percentage' => '51.06',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'osa' => array(
(int) 0 => 'OS12G19381',
(int) 1 => 'OS12G17600',
(int) 2 => 'OS12G19470',
(int) 3 => 'OS02G05830'
),
'ath' => array(
(int) 0 => 'AT1G67090',
(int) 1 => 'AT5G38430',
(int) 2 => 'AT5G38420',
(int) 3 => 'AT5G38410'
),
'atr' => array(
(int) 0 => 'ATR_00079G00180',
(int) 1 => 'ATR_00054G00120'
),
'ppa' => array(
(int) 0 => 'PP00007G01040',
(int) 1 => 'PP00012G01130',
(int) 2 => 'PP00339G00100',
(int) 3 => 'PP00056G00690',
(int) 4 => 'PP00056G00720',
(int) 5 => 'PP00459G00050',
(int) 6 => 'PP00109G00440',
(int) 7 => 'PP00352G00090',
(int) 8 => 'PP00188G00240',
(int) 9 => 'PP00046G00130',
(int) 10 => 'PP00545G00030',
(int) 11 => 'PP00251G00310',
(int) 12 => 'PP00066G00230',
(int) 13 => 'PP00066G00240',
(int) 14 => 'PP00161G00130',
(int) 15 => 'PP00312G00270',
(int) 16 => 'PP00161G00170',
(int) 17 => 'PP00352G00250',
(int) 18 => 'PP00025G00590',
(int) 19 => 'PP00025G00610',
(int) 20 => 'PP00459G00010',
(int) 21 => 'PP00204G00510',
(int) 22 => 'PP00204G00480',
(int) 23 => 'PP00227G00680',
(int) 24 => 'PP00374G00180',
(int) 25 => 'PP00056G00680',
(int) 26 => 'PP00374G00140',
(int) 27 => 'PP00459G00020',
(int) 28 => 'PP00051G01450',
(int) 29 => 'PP00015G01310'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_001G05380',
(int) 1 => 'CNC64A_001G05370'
),
'apr' => array(
(int) 0 => 'AP00G20260'
),
'acg' => array(
(int) 0 => 'AC00G16230'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G01940',
(int) 1 => 'ORCC809_17G01930'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G00260',
(int) 1 => 'BPRRCC1105_09G00270',
(int) 2 => 'BPRRCC1105_09G00240'
),
'pse3' => array(
(int) 0 => 'PI00G60200',
(int) 1 => 'PI00G53190'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_03G08530',
(int) 1 => 'MRCC299_03G08520'
),
'vca' => array(
(int) 0 => 'VC00G28840',
(int) 1 => 'VC00G28850',
(int) 2 => 'VC00G28870',
(int) 3 => 'VC00G28860',
(int) 4 => 'VC00G28830',
(int) 5 => 'VC00G28910',
(int) 6 => 'VC00G28880'
),
'cvu' => array(
(int) 0 => 'CV00G54720'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.02g01470',
(int) 1 => 'RCC4223.02g06940'
),
'mpu' => array(
(int) 0 => 'MP17G02670',
(int) 1 => 'MP17G02660',
(int) 2 => 'MP17G02680'
),
'ota' => array(
(int) 0 => 'OT_18G01930',
(int) 1 => 'OT_18G01940'
),
'olu' => array(
(int) 0 => 'OL17G01930',
(int) 1 => 'OL17G01940',
(int) 2 => 'OL17G01920'
),
'cre' => array(
(int) 0 => 'CR02G11640',
(int) 1 => 'CR02G11650'
),
'ome' => array(
(int) 0 => 'OM_18G00180'
),
'ccr' => array(
(int) 0 => 'ccr03540'
),
'cme' => array(
(int) 0 => 'CMCG00140'
),
'aan' => array(
(int) 0 => 'AACG00900'
),
'tps' => array(
(int) 0 => 'TPCG00230'
)
),
'gene_id' => 'OS12G19381',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'OS12G19381',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'BPRRCC1105_06G04850',
'gf_placeholder' => 'HOM03P015778',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'OS12G19381' => array(
'gene_id' => 'OS12G19381',
'e_value' => '1e-128',
'bit_score' => '365',
'alignment_length' => '176',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OS12G17600' => array(
'gene_id' => 'OS12G17600',
'e_value' => '9e-125',
'bit_score' => '355',
'alignment_length' => '176',
'identity_percentage' => '96.02',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OS12G19470' => array(
'gene_id' => 'OS12G19470',
'e_value' => '6e-91',
'bit_score' => '270',
'alignment_length' => '128',
'identity_percentage' => '100.00',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT1G67090' => array(
'gene_id' => 'AT1G67090',
'e_value' => '8e-79',
'bit_score' => '239',
'alignment_length' => '167',
'identity_percentage' => '67.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT5G38430' => array(
'gene_id' => 'AT5G38430',
'e_value' => '1e-77',
'bit_score' => '236',
'alignment_length' => '161',
'identity_percentage' => '67.70',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT5G38420' => array(
'gene_id' => 'AT5G38420',
'e_value' => '2e-77',
'bit_score' => '236',
'alignment_length' => '166',
'identity_percentage' => '65.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AT5G38410' => array(
'gene_id' => 'AT5G38410',
'e_value' => '7e-77',
'bit_score' => '234',
'alignment_length' => '171',
'identity_percentage' => '63.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ATR_00079G00180' => array(
'gene_id' => 'ATR_00079G00180',
'e_value' => '2e-71',
'bit_score' => '221',
'alignment_length' => '154',
'identity_percentage' => '64.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00007G01040' => array(
'gene_id' => 'PP00007G01040',
'e_value' => '1e-58',
'bit_score' => '188',
'alignment_length' => '163',
'identity_percentage' => '54.60',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ATR_00054G00120' => array(
'gene_id' => 'ATR_00054G00120',
'e_value' => '5e-58',
'bit_score' => '186',
'alignment_length' => '166',
'identity_percentage' => '50.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00012G01130' => array(
'gene_id' => 'PP00012G01130',
'e_value' => '7e-58',
'bit_score' => '186',
'alignment_length' => '158',
'identity_percentage' => '54.43',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00339G00100' => array(
'gene_id' => 'PP00339G00100',
'e_value' => '3e-57',
'bit_score' => '184',
'alignment_length' => '160',
'identity_percentage' => '53.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00056G00690' => array(
'gene_id' => 'PP00056G00690',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00056G00720' => array(
'gene_id' => 'PP00056G00720',
'e_value' => '4e-57',
'bit_score' => '184',
'alignment_length' => '163',
'identity_percentage' => '52.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00459G00050' => array(
'gene_id' => 'PP00459G00050',
'e_value' => '5e-57',
'bit_score' => '184',
'alignment_length' => '157',
'identity_percentage' => '55.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00109G00440' => array(
'gene_id' => 'PP00109G00440',
'e_value' => '1e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00352G00090' => array(
'gene_id' => 'PP00352G00090',
'e_value' => '2e-56',
'bit_score' => '182',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00188G00240' => array(
'gene_id' => 'PP00188G00240',
'e_value' => '3e-56',
'bit_score' => '181',
'alignment_length' => '155',
'identity_percentage' => '54.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00046G00130' => array(
'gene_id' => 'PP00046G00130',
'e_value' => '4e-56',
'bit_score' => '181',
'alignment_length' => '161',
'identity_percentage' => '54.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00545G00030' => array(
'gene_id' => 'PP00545G00030',
'e_value' => '6e-56',
'bit_score' => '187',
'alignment_length' => '162',
'identity_percentage' => '54.94',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00251G00310' => array(
'gene_id' => 'PP00251G00310',
'e_value' => '1e-55',
'bit_score' => '180',
'alignment_length' => '155',
'identity_percentage' => '53.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00066G00230' => array(
'gene_id' => 'PP00066G00230',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00066G00240' => array(
'gene_id' => 'PP00066G00240',
'e_value' => '3e-55',
'bit_score' => '179',
'alignment_length' => '152',
'identity_percentage' => '56.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00161G00130' => array(
'gene_id' => 'PP00161G00130',
'e_value' => '9e-55',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00312G00270' => array(
'gene_id' => 'PP00312G00270',
'e_value' => '1e-54',
'bit_score' => '177',
'alignment_length' => '168',
'identity_percentage' => '50.00',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OS02G05830' => array(
'gene_id' => 'OS02G05830',
'e_value' => '3e-54',
'bit_score' => '178',
'alignment_length' => '136',
'identity_percentage' => '54.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00161G00170' => array(
'gene_id' => 'PP00161G00170',
'e_value' => '4e-54',
'bit_score' => '176',
'alignment_length' => '168',
'identity_percentage' => '48.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00352G00250' => array(
'gene_id' => 'PP00352G00250',
'e_value' => '1e-53',
'bit_score' => '175',
'alignment_length' => '142',
'identity_percentage' => '53.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00025G00590' => array(
'gene_id' => 'PP00025G00590',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00025G00610' => array(
'gene_id' => 'PP00025G00610',
'e_value' => '1e-52',
'bit_score' => '172',
'alignment_length' => '162',
'identity_percentage' => '49.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00459G00010' => array(
'gene_id' => 'PP00459G00010',
'e_value' => '2e-51',
'bit_score' => '169',
'alignment_length' => '157',
'identity_percentage' => '49.04',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00204G00510' => array(
'gene_id' => 'PP00204G00510',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00204G00480' => array(
'gene_id' => 'PP00204G00480',
'e_value' => '6e-51',
'bit_score' => '168',
'alignment_length' => '158',
'identity_percentage' => '49.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CNC64A_001G05380' => array(
'gene_id' => 'CNC64A_001G05380',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CNC64A_001G05370' => array(
'gene_id' => 'CNC64A_001G05370',
'e_value' => '1e-46',
'bit_score' => '157',
'alignment_length' => '176',
'identity_percentage' => '40.34',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AP00G20260' => array(
'gene_id' => 'AP00G20260',
'e_value' => '1e-44',
'bit_score' => '152',
'alignment_length' => '177',
'identity_percentage' => '41.81',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AC00G16230' => array(
'gene_id' => 'AC00G16230',
'e_value' => '8e-44',
'bit_score' => '150',
'alignment_length' => '141',
'identity_percentage' => '47.52',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00227G00680' => array(
'gene_id' => 'PP00227G00680',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '151',
'identity_percentage' => '49.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ORCC809_17G01940' => array(
'gene_id' => 'ORCC809_17G01940',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'ORCC809_17G01930' => array(
'gene_id' => 'ORCC809_17G01930',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '138',
'identity_percentage' => '46.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'BPRRCC1105_09G00260' => array(
'gene_id' => 'BPRRCC1105_09G00260',
'e_value' => '7e-42',
'bit_score' => '144',
'alignment_length' => '137',
'identity_percentage' => '48.18',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PI00G60200' => array(
'gene_id' => 'PI00G60200',
'e_value' => '1e-41',
'bit_score' => '144',
'alignment_length' => '178',
'identity_percentage' => '41.01',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MRCC299_03G08530' => array(
'gene_id' => 'MRCC299_03G08530',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '155',
'identity_percentage' => '41.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'BPRRCC1105_09G00270' => array(
'gene_id' => 'BPRRCC1105_09G00270',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '129',
'identity_percentage' => '49.61',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28840' => array(
'gene_id' => 'VC00G28840',
'e_value' => '2e-41',
'bit_score' => '143',
'alignment_length' => '181',
'identity_percentage' => '42.54',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CV00G54720' => array(
'gene_id' => 'CV00G54720',
'e_value' => '3e-41',
'bit_score' => '144',
'alignment_length' => '176',
'identity_percentage' => '43.18',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28850' => array(
'gene_id' => 'VC00G28850',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '175',
'identity_percentage' => '40.00',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28870' => array(
'gene_id' => 'VC00G28870',
'e_value' => '3e-41',
'bit_score' => '143',
'alignment_length' => '178',
'identity_percentage' => '40.45',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MRCC299_03G08520' => array(
'gene_id' => 'MRCC299_03G08520',
'e_value' => '5e-41',
'bit_score' => '142',
'alignment_length' => '153',
'identity_percentage' => '41.83',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28860' => array(
'gene_id' => 'VC00G28860',
'e_value' => '6e-41',
'bit_score' => '142',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'RCC4223.02g01470' => array(
'gene_id' => 'RCC4223.02g01470',
'e_value' => '1e-40',
'bit_score' => '141',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MP17G02670' => array(
'gene_id' => 'MP17G02670',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28830' => array(
'gene_id' => 'VC00G28830',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28910' => array(
'gene_id' => 'VC00G28910',
'e_value' => '2e-40',
'bit_score' => '141',
'alignment_length' => '140',
'identity_percentage' => '45.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MP17G02660' => array(
'gene_id' => 'MP17G02660',
'e_value' => '3e-40',
'bit_score' => '141',
'alignment_length' => '127',
'identity_percentage' => '46.46',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PI00G53190' => array(
'gene_id' => 'PI00G53190',
'e_value' => '3e-40',
'bit_score' => '140',
'alignment_length' => '176',
'identity_percentage' => '41.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OT_18G01930' => array(
'gene_id' => 'OT_18G01930',
'e_value' => '5e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '44.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OL17G01930' => array(
'gene_id' => 'OL17G01930',
'e_value' => '6e-40',
'bit_score' => '139',
'alignment_length' => '138',
'identity_percentage' => '43.48',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'VC00G28880' => array(
'gene_id' => 'VC00G28880',
'e_value' => '7e-40',
'bit_score' => '139',
'alignment_length' => '131',
'identity_percentage' => '48.09',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CR02G11640' => array(
'gene_id' => 'CR02G11640',
'e_value' => '1e-39',
'bit_score' => '139',
'alignment_length' => '126',
'identity_percentage' => '49.21',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CR02G11650' => array(
'gene_id' => 'CR02G11650',
'e_value' => '6e-39',
'bit_score' => '137',
'alignment_length' => '131',
'identity_percentage' => '46.56',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OT_18G01940' => array(
'gene_id' => 'OT_18G01940',
'e_value' => '1e-38',
'bit_score' => '140',
'alignment_length' => '145',
'identity_percentage' => '42.76',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OM_18G00170' => array(
'gene_id' => 'OM_18G00170',
'e_value' => '2e-38',
'bit_score' => '144',
'alignment_length' => '139',
'identity_percentage' => '46.04',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'BPRRCC1105_09G00240' => array(
'gene_id' => 'BPRRCC1105_09G00240',
'e_value' => '2e-38',
'bit_score' => '134',
'alignment_length' => '124',
'identity_percentage' => '48.39',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'RCC4223.02g06940' => array(
'gene_id' => 'RCC4223.02g06940',
'e_value' => '1e-37',
'bit_score' => '132',
'alignment_length' => '118',
'identity_percentage' => '47.46',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'MP17G02680' => array(
'gene_id' => 'MP17G02680',
'e_value' => '2e-37',
'bit_score' => '134',
'alignment_length' => '116',
'identity_percentage' => '46.55',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OL17G01940' => array(
'gene_id' => 'OL17G01940',
'e_value' => '8e-36',
'bit_score' => '129',
'alignment_length' => '118',
'identity_percentage' => '44.07',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P047425'
)
),
'OL17G01920' => array(
'gene_id' => 'OL17G01920',
'e_value' => '2e-35',
'bit_score' => '126',
'alignment_length' => '118',
'identity_percentage' => '43.22',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P047425'
)
),
'PP00374G00180' => array(
'gene_id' => 'PP00374G00180',
'e_value' => '2e-31',
'bit_score' => '115',
'alignment_length' => '90',
'identity_percentage' => '53.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'OM_18G00180' => array(
'gene_id' => 'OM_18G00180',
'e_value' => '3e-19',
'bit_score' => '82.8',
'alignment_length' => '58',
'identity_percentage' => '53.45',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P097537'
)
),
'PP00056G00680' => array(
'gene_id' => 'PP00056G00680',
'e_value' => '2e-17',
'bit_score' => '77.8',
'alignment_length' => '52',
'identity_percentage' => '57.69',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P048489'
)
),
'PP00374G00140' => array(
'gene_id' => 'PP00374G00140',
'e_value' => '5e-17',
'bit_score' => '76.3',
'alignment_length' => '52',
'identity_percentage' => '55.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P048489'
)
),
'PP00459G00020' => array(
'gene_id' => 'PP00459G00020',
'e_value' => '6e-16',
'bit_score' => '75.1',
'alignment_length' => '93',
'identity_percentage' => '39.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00051G01450' => array(
'gene_id' => 'PP00051G01450',
'e_value' => '3e-14',
'bit_score' => '68.9',
'alignment_length' => '52',
'identity_percentage' => '51.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P168770'
)
),
'ccr03540' => array(
'gene_id' => 'ccr03540',
'e_value' => '4e-13',
'bit_score' => '67.4',
'alignment_length' => '114',
'identity_percentage' => '31.58',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'CMCG00140' => array(
'gene_id' => 'CMCG00140',
'e_value' => '1e-12',
'bit_score' => '66.2',
'alignment_length' => '108',
'identity_percentage' => '27.78',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'AACG00900' => array(
'gene_id' => 'AACG00900',
'e_value' => '4e-11',
'bit_score' => '62.0',
'alignment_length' => '108',
'identity_percentage' => '30.56',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'TPCG00230' => array(
'gene_id' => 'TPCG00230',
'e_value' => '3e-09',
'bit_score' => '56.2',
'alignment_length' => '107',
'identity_percentage' => '30.84',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
),
'PP00015G01310' => array(
'gene_id' => 'PP00015G01310',
'e_value' => '3e-08',
'bit_score' => '52.0',
'alignment_length' => '47',
'identity_percentage' => '51.06',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P183783'
)
)
)
$similarity_hits_species = array(
'osa' => array(
(int) 0 => 'OS12G19381',
(int) 1 => 'OS12G17600',
(int) 2 => 'OS12G19470',
(int) 3 => 'OS02G05830'
),
'ath' => array(
(int) 0 => 'AT1G67090',
(int) 1 => 'AT5G38430',
(int) 2 => 'AT5G38420',
(int) 3 => 'AT5G38410'
),
'atr' => array(
(int) 0 => 'ATR_00079G00180',
(int) 1 => 'ATR_00054G00120'
),
'ppa' => array(
(int) 0 => 'PP00007G01040',
(int) 1 => 'PP00012G01130',
(int) 2 => 'PP00339G00100',
(int) 3 => 'PP00056G00690',
(int) 4 => 'PP00056G00720',
(int) 5 => 'PP00459G00050',
(int) 6 => 'PP00109G00440',
(int) 7 => 'PP00352G00090',
(int) 8 => 'PP00188G00240',
(int) 9 => 'PP00046G00130',
(int) 10 => 'PP00545G00030',
(int) 11 => 'PP00251G00310',
(int) 12 => 'PP00066G00230',
(int) 13 => 'PP00066G00240',
(int) 14 => 'PP00161G00130',
(int) 15 => 'PP00312G00270',
(int) 16 => 'PP00161G00170',
(int) 17 => 'PP00352G00250',
(int) 18 => 'PP00025G00590',
(int) 19 => 'PP00025G00610',
(int) 20 => 'PP00459G00010',
(int) 21 => 'PP00204G00510',
(int) 22 => 'PP00204G00480',
(int) 23 => 'PP00227G00680',
(int) 24 => 'PP00374G00180',
(int) 25 => 'PP00056G00680',
(int) 26 => 'PP00374G00140',
(int) 27 => 'PP00459G00020',
(int) 28 => 'PP00051G01450',
(int) 29 => 'PP00015G01310'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_001G05380',
(int) 1 => 'CNC64A_001G05370'
),
'apr' => array(
(int) 0 => 'AP00G20260'
),
'acg' => array(
(int) 0 => 'AC00G16230'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G01940',
(int) 1 => 'ORCC809_17G01930'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G00260',
(int) 1 => 'BPRRCC1105_09G00270',
(int) 2 => 'BPRRCC1105_09G00240'
),
'pse3' => array(
(int) 0 => 'PI00G60200',
(int) 1 => 'PI00G53190'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_03G08530',
(int) 1 => 'MRCC299_03G08520'
),
'vca' => array(
(int) 0 => 'VC00G28840',
(int) 1 => 'VC00G28850',
(int) 2 => 'VC00G28870',
(int) 3 => 'VC00G28860',
(int) 4 => 'VC00G28830',
(int) 5 => 'VC00G28910',
(int) 6 => 'VC00G28880'
),
'cvu' => array(
(int) 0 => 'CV00G54720'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.02g01470',
(int) 1 => 'RCC4223.02g06940'
),
'mpu' => array(
(int) 0 => 'MP17G02670',
(int) 1 => 'MP17G02660',
(int) 2 => 'MP17G02680'
),
'ota' => array(
(int) 0 => 'OT_18G01930',
(int) 1 => 'OT_18G01940'
),
'olu' => array(
(int) 0 => 'OL17G01930',
(int) 1 => 'OL17G01940',
(int) 2 => 'OL17G01920'
),
'cre' => array(
(int) 0 => 'CR02G11640',
(int) 1 => 'CR02G11650'
),
'ome' => array(
(int) 0 => 'OM_18G00180'
),
'ccr' => array(
(int) 0 => 'ccr03540'
),
'cme' => array(
(int) 0 => 'CMCG00140'
),
'aan' => array(
(int) 0 => 'AACG00900'
),
'tps' => array(
(int) 0 => 'TPCG00230'
)
)
$gene_id = 'OS12G19381'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'OS12G19381'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'BPRRCC1105_06G04850'
$gf_placeholder = 'HOM03P015778'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'OM_18G00170',
'e_value' => '2e-38',
'bit_score' => '144',
'alignment_length' => '139',
'identity_percentage' => '46.04',
'gf' => array(
'HOMFAM' => 'HOM03P000616',
'ORTHOFAM' => 'ORTHO03P000136'
)
)
$checked = null
$similarity_hit_gene = 'OM_18G00170'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
2e-38 |
144 |
139 |
46.04 |