Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS10G20090	Oryza sativa	0.0	1554	751	100.00
OS04G35020	Oryza sativa	0.0	934	769	65.15
ATR_00017G01730	Amborella trichopoda	0.0	639	719	47.43
ATR_00017G00080	Amborella trichopoda	0.0	622	696	47.99
AT2G32540	Arabidopsis thaliana	0.0	595	722	44.46
AT2G32530	Arabidopsis thaliana	0.0	590	763	41.81
AT2G32620	Arabidopsis thaliana	4e-180	541	771	41.25
AT2G32610	Arabidopsis thaliana	3e-175	528	762	39.90
AT4G15290	Arabidopsis thaliana	2e-171	519	716	39.94
AT4G15320	Arabidopsis thaliana	3e-146	456	750	37.33
ATR_00137G00140	Amborella trichopoda	4e-126	409	808	34.28
OS09G25490	Oryza sativa	8e-125	405	786	34.73
OS04G35030	Oryza sativa	8e-124	383	231	78.35
ATR_00017G00110	Amborella trichopoda	8e-124	388	519	42.77
AT5G05170	Arabidopsis thaliana	6e-123	400	809	33.99
AT4G18780	Arabidopsis thaliana	5e-121	393	808	33.54
AT5G09870	Arabidopsis thaliana	1e-120	395	831	33.45
OS03G59340	Oryza sativa	3e-120	394	822	32.73
AT2G25540	Arabidopsis thaliana	7e-120	392	810	33.70
OS07G10770	Oryza sativa	9e-120	392	822	33.21
OS09G30130	Oryza sativa	6e-119	381	750	33.73
AT5G17420	Arabidopsis thaliana	7e-119	389	801	33.33
AT4G32410	Arabidopsis thaliana	1e-118	389	818	32.89
ATR_00081G00760	Amborella trichopoda	2e-118	389	827	33.13
ATR_00103G00760	Amborella trichopoda	2e-117	386	801	32.83
OS01G54620	Oryza sativa	1e-115	379	812	32.51
AT2G21770	Arabidopsis thaliana	3e-115	380	820	31.59
OS05G08370	Oryza sativa	7e-115	379	782	33.25
ATR_00061G02350	Amborella trichopoda	1e-114	370	732	34.29
AT1G55850	Arabidopsis thaliana	3e-114	369	692	36.56
AT5G64740	Arabidopsis thaliana	3e-114	377	835	32.69
AT4G24000	Arabidopsis thaliana	3e-112	363	701	34.09
ATR_00017G02090	Amborella trichopoda	5e-112	371	793	32.28
OS02G49332	Oryza sativa	2e-110	359	698	32.81
ATR_00170G00010	Amborella trichopoda	7e-110	362	803	31.63
AT4G39350	Arabidopsis thaliana	8e-110	365	834	31.53
AT4G23990	Arabidopsis thaliana	1e-109	357	736	32.61
OS09G30120	Oryza sativa	3e-108	353	719	31.43
PP00090G01250	Physcomitrella patens	2e-107	359	828	30.43
OS03G62090	Oryza sativa	2e-106	357	830	32.05
AT4G24010	Arabidopsis thaliana	1e-105	347	727	33.15
PP00269G00120	Physcomitrella patens	5e-105	353	856	32.71
ATR_00045G01550	Amborella trichopoda	6e-105	351	804	30.85
AT4G38190	Arabidopsis thaliana	5e-103	347	834	31.89
PP00111G00250	Physcomitrella patens	5e-103	348	838	32.58
ATR_00048G00590	Amborella trichopoda	6e-103	348	829	33.41
AT1G32180	Arabidopsis thaliana	7e-102	342	802	32.29
ATR_00022G01210	Amborella trichopoda	8e-102	345	821	33.13
OS07G36700	Oryza sativa	6e-101	337	678	34.22
ATR_00021G02120	Amborella trichopoda	7e-101	333	738	34.01
ATR_00002G02960	Amborella trichopoda	4e-100	330	625	33.44
PP00111G00180	Physcomitrella patens	7e-100	340	854	32.67
OS07G36740	Oryza sativa	9e-100	334	690	34.64
PP00310G00070	Physcomitrella patens	2e-99	338	847	31.88
OS07G36690	Oryza sativa	2e-99	333	678	34.07
PP00243G00060	Physcomitrella patens	3e-99	338	824	32.52
OS10G20260	Oryza sativa	7e-99	330	623	36.60
AT3G03050	Arabidopsis thaliana	3e-98	335	829	31.85
PP00057G00480	Physcomitrella patens	3e-98	335	854	31.38
PP00243G00010	Physcomitrella patens	3e-98	335	843	31.55
AT5G16910	Arabidopsis thaliana	1e-97	333	829	31.36
OS07G36630	Oryza sativa	2e-97	328	782	31.33
OS08G25710	Oryza sativa	2e-97	332	839	31.82
OS06G02180	Oryza sativa	3e-97	332	830	32.89
AT1G02730	Arabidopsis thaliana	3e-96	330	863	31.63
OS06G22980	Oryza sativa	4e-96	327	854	30.80
AT2G33100	Arabidopsis thaliana	8e-96	326	824	30.10
OS10G42750	Oryza sativa	2e-95	327	838	31.15
OS07G36750	Oryza sativa	3e-94	319	685	32.41
ATR_00019G03800	Amborella trichopoda	1e-93	321	821	31.18
OS07G36610	Oryza sativa	1e-92	315	756	31.75
OS08G06380	Oryza sativa	6e-92	314	702	32.48
PP00213G00010	Physcomitrella patens	4e-90	309	825	28.97
PP00008G00780	Physcomitrella patens	1e-74	263	388	37.11
PP00112G00250	Physcomitrella patens	2e-74	266	388	37.63
OS07G14850	Oryza sativa	4e-73	262	394	38.58
OS07G24190	Oryza sativa	1e-72	261	394	38.58
ATR_00067G02090	Amborella trichopoda	1e-71	258	396	38.38
AT5G44030	Arabidopsis thaliana	5e-71	256	388	38.66
ATR_00022G00640	Amborella trichopoda	7e-71	256	394	37.56
OS06G39970	Oryza sativa	1e-70	253	793	30.64
OS10G32980	Oryza sativa	2e-70	254	397	38.54
PP00029G01150	Physcomitrella patens	5e-70	253	391	37.34
PP00030G00170	Physcomitrella patens	9e-70	252	391	36.83
ATR_00061G02330	Amborella trichopoda	3e-69	243	520	31.35
ATR_00057G00940	Amborella trichopoda	1e-62	226	534	32.40
PP00068G00840	Physcomitrella patens	6e-58	218	415	36.87
OS12G36890	Oryza sativa	5e-52	200	451	31.93
PP00059G01570	Physcomitrella patens	2e-37	151	527	27.51
PP00189G00480	Physcomitrella patens	2e-33	140	364	29.12
PP00189G00510	Physcomitrella patens	2e-33	140	364	29.12
ATR_00057G00930	Amborella trichopoda	2e-30	130	160	47.50
OS12G29300	Oryza sativa	2e-19	93.2	137	37.96
PP00059G01580	Physcomitrella patens	4e-19	92.4	156	35.26
PP00015G00170	Physcomitrella patens	2e-18	87.4	85	48.24
OS09G30105	Oryza sativa	1e-15	82.4	138	33.33
ATR_00061G02320	Amborella trichopoda	8e-15	76.6	69	52.17
OS07G36680	Oryza sativa	1e-14	78.6	138	39.86
PP00120G00840	Physcomitrella patens	7e-13	71.2	66	50.00
PI00G60790	Picochlorum sp. SENEW3 (SE3)	1e-08	62.8	164	28.05
Naga_100049g27	Nannochloropsis gaditana	6e-08	60.5	175	30.29
ATR_00067G02080	Amborella trichopoda	8e-07	53.5	35	60.00
OS06G11050	Oryza sativa	4e-06	53.9	83	48.19

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment