Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS09G30120	Oryza sativa	0.0	1538	738	100.00
OS09G30130	Oryza sativa	0.0	1316	738	84.96
OS02G49332	Oryza sativa	0.0	850	725	57.10
ATR_00061G02350	Amborella trichopoda	0.0	776	732	51.64
AT1G55850	Arabidopsis thaliana	0.0	707	731	49.25
ATR_00061G02330	Amborella trichopoda	0.0	576	532	50.56
ATR_00021G02120	Amborella trichopoda	2e-169	513	740	38.38
AT4G23990	Arabidopsis thaliana	8e-165	501	714	38.10
AT4G24010	Arabidopsis thaliana	1e-158	485	701	38.09
AT4G24000	Arabidopsis thaliana	1e-156	479	711	36.29
OS09G25490	Oryza sativa	6e-132	424	789	31.56
ATR_00137G00140	Amborella trichopoda	1e-127	412	791	31.48
AT5G17420	Arabidopsis thaliana	1e-124	404	791	31.35
OS05G08370	Oryza sativa	1e-120	394	774	31.40
ATR_00017G00080	Amborella trichopoda	6e-119	379	695	31.94
ATR_00017G01730	Amborella trichopoda	3e-116	375	657	34.25
AT2G32530	Arabidopsis thaliana	2e-115	372	756	32.01
ATR_00045G01550	Amborella trichopoda	3e-115	379	799	30.41
AT2G32540	Arabidopsis thaliana	3e-113	366	730	32.33
AT4G15290	Arabidopsis thaliana	1e-107	352	731	31.05
OS10G20090	Oryza sativa	1e-106	349	705	31.49
AT2G32620	Arabidopsis thaliana	2e-105	346	725	31.17
AT2G32610	Arabidopsis thaliana	6e-105	345	739	30.45
OS07G36630	Oryza sativa	5e-98	329	752	28.46
OS10G20260	Oryza sativa	1e-93	316	611	32.73
OS07G36700	Oryza sativa	2e-92	313	690	29.42
OS07G36610	Oryza sativa	5e-92	313	690	29.42
OS07G36690	Oryza sativa	6e-91	310	690	29.28
AT4G15320	Arabidopsis thaliana	5e-90	306	718	29.25
OS07G36750	Oryza sativa	2e-88	303	813	27.31
PP00008G00780	Physcomitrella patens	2e-87	298	393	39.44
AT5G09870	Arabidopsis thaliana	3e-87	303	395	40.00
AT5G44030	Arabidopsis thaliana	1e-86	300	391	40.41
PP00112G00250	Physcomitrella patens	4e-86	300	395	39.24
ATR_00017G02090	Amborella trichopoda	6e-86	299	346	43.64
AT4G39350	Arabidopsis thaliana	2e-85	298	395	38.99
ATR_00103G00760	Amborella trichopoda	2e-85	298	397	39.80
PP00213G00010	Physcomitrella patens	2e-85	296	409	38.14
AT5G05170	Arabidopsis thaliana	3e-85	297	398	40.70
ATR_00022G00640	Amborella trichopoda	5e-85	296	401	38.40
PP00030G00170	Physcomitrella patens	5e-85	296	409	38.14
PP00029G01150	Physcomitrella patens	1e-84	296	395	38.23
ATR_00170G00010	Amborella trichopoda	1e-84	293	405	38.52
OS07G14850	Oryza sativa	1e-84	295	393	38.93
AT5G64740	Arabidopsis thaliana	1e-84	295	395	39.24
OS10G32980	Oryza sativa	2e-84	295	396	38.38
ATR_00067G02090	Amborella trichopoda	2e-84	294	396	38.64
PP00090G01250	Physcomitrella patens	2e-84	295	409	38.14
AT2G21770	Arabidopsis thaliana	4e-84	294	364	41.21
OS07G10770	Oryza sativa	4e-84	294	397	39.80
AT4G18780	Arabidopsis thaliana	1e-83	291	367	41.69
OS03G62090	Oryza sativa	1e-83	293	403	38.71
OS03G59340	Oryza sativa	2e-83	291	397	38.79
AT2G25540	Arabidopsis thaliana	4e-83	291	363	41.32
OS01G54620	Oryza sativa	1e-82	289	364	41.76
OS07G24190	Oryza sativa	5e-82	288	393	38.17
ATR_00081G00760	Amborella trichopoda	2e-81	286	399	39.10
AT4G32410	Arabidopsis thaliana	2e-81	286	376	40.43
OS07G36740	Oryza sativa	3e-81	283	702	27.07
ATR_00002G02960	Amborella trichopoda	2e-77	269	390	36.41
OS04G35020	Oryza sativa	4e-76	267	716	28.07
AT3G03050	Arabidopsis thaliana	2e-75	269	810	27.90
ATR_00017G00110	Amborella trichopoda	3e-74	256	522	30.08
AT1G32180	Arabidopsis thaliana	2e-71	256	449	34.08
AT1G02730	Arabidopsis thaliana	4e-71	257	450	37.33
PP00111G00250	Physcomitrella patens	5e-71	256	401	37.41
PP00111G00180	Physcomitrella patens	2e-70	254	451	35.92
PP00243G00060	Physcomitrella patens	3e-70	254	448	36.61
PP00057G00480	Physcomitrella patens	4e-70	254	400	37.25
PP00310G00070	Physcomitrella patens	8e-70	253	404	37.38
PP00269G00120	Physcomitrella patens	1e-69	252	448	35.94
PP00243G00010	Physcomitrella patens	1e-69	252	401	37.66
AT5G16910	Arabidopsis thaliana	4e-69	251	428	36.21
ATR_00048G00590	Amborella trichopoda	5e-69	250	400	37.00
OS06G02180	Oryza sativa	7e-69	250	401	36.41
OS08G25710	Oryza sativa	7e-69	249	418	35.89
ATR_00022G01210	Amborella trichopoda	2e-68	249	433	35.33
AT4G38190	Arabidopsis thaliana	3e-68	248	394	37.31
OS10G42750	Oryza sativa	6e-68	247	462	34.85
AT2G33100	Arabidopsis thaliana	1e-66	243	429	34.03
OS12G36890	Oryza sativa	8e-65	239	408	34.07
PP00068G00840	Physcomitrella patens	1e-64	238	348	38.51
OS06G39970	Oryza sativa	2e-63	232	373	37.00
OS08G06380	Oryza sativa	7e-62	228	425	34.35
OS06G22980	Oryza sativa	2e-61	227	429	32.17
ATR_00019G03800	Amborella trichopoda	5e-61	226	424	34.20
OS09G30105	Oryza sativa	2e-59	209	190	55.26
OS04G35030	Oryza sativa	4e-44	168	241	36.51
PP00189G00480	Physcomitrella patens	6e-36	147	132	47.73
PP00189G00510	Physcomitrella patens	6e-36	147	132	47.73
PP00059G01570	Physcomitrella patens	1e-32	137	166	40.36
ATR_00057G00930	Amborella trichopoda	2e-32	136	139	49.64
ATR_00057G00940	Amborella trichopoda	2e-31	134	150	44.00
PP00059G01580	Physcomitrella patens	1e-24	108	153	33.99
ATR_00061G02320	Amborella trichopoda	5e-24	102	71	61.97
PP00015G00170	Physcomitrella patens	4e-21	95.1	100	41.00
OS12G29300	Oryza sativa	5e-21	98.2	130	39.23
PP00120G00840	Physcomitrella patens	1e-11	67.8	72	43.06
DDB_G0269124	Dictyostelium discoideum	2e-11	71.6	303	24.75
OS07G36680	Oryza sativa	7e-11	67.0	71	42.25
ES0004G00460	Ectocarpus siliculosus	7e-11	70.1	256	25.39
PI00G34600	Picochlorum sp. SENEW3 (SE3)	9e-11	69.7	426	23.47
CV00G01670	Coccomyxa subellipsoidea C-169	2e-10	68.6	407	22.11
Naga_100049g27	Nannochloropsis gaditana	4e-10	67.0	409	24.21
RCC4223.10g00870	Picochlorum_RCC4223	6e-10	67.0	429	23.31
ATR_00067G02080	Amborella trichopoda	2e-07	55.5	44	43.18
ES0231G00120	Ectocarpus siliculosus	4e-07	57.8	321	22.43
PP00372G00370	Physcomitrella patens	6e-07	57.0	182	27.47

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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