Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS09G12660	Oryza sativa	0.0	1032	501	100.00
OS08G25734	Oryza sativa	0.0	861	479	88.73
AT5G48300	Arabidopsis thaliana	0.0	836	469	85.93
ATR_00061G00930	Amborella trichopoda	0.0	832	513	80.12
PP00076G00400	Physcomitrella patens	0.0	772	460	81.74
PP00002G02010	Physcomitrella patens	0.0	771	469	80.81
PP00239G00160	Physcomitrella patens	0.0	769	460	81.74
PP00002G01820	Physcomitrella patens	0.0	711	466	72.96
AC00G85880	Asterochloris sp. Cgr-DA1pho v2.0	0.0	623	450	66.00
CV00G55440	Coccomyxa subellipsoidea C-169	0.0	605	425	69.18
MP01G04380	Micromonas pusilla strain CCMP1545	0.0	607	437	65.45
OM_06G03440	Ostreococcus mediterraneus	0.0	604	480	61.04
OL07G03120	Ostreococcus lucimarinus	0.0	599	433	66.05
MRCC299_07G03860	Micromonas sp RCC299	0.0	595	503	61.03
ORCC809_07G03300	Ostreococcus sp RCC809	0.0	591	433	65.82
OT_07G03170	Ostreococcus tauri	0.0	589	437	63.62
BPRRCC1105_04G03110	Bathycoccus prasinos	0.0	588	477	61.43
RCC4223.01g05300	Picochlorum_RCC4223	0.0	577	425	64.71
PI00G47850	Picochlorum sp. SENEW3 (SE3)	0.0	574	441	64.85
VC00G112610	Volvox carteri	0.0	566	425	63.53
HE0000G43340	Helicosporidium sp.	0.0	564	426	63.15
PP00347G00040	Physcomitrella patens	0.0	565	457	57.77
CR03G10260	Chlamydomonas reinhardtii	0.0	563	445	63.82
AP00G23970	Auxenochlorella protothecoides	0.0	561	427	63.23
PI00G51170	Picochlorum sp. SENEW3 (SE3)	0.0	556	442	58.60
CNC64A_038G00100	Chlorella sp NC64A	0.0	553	484	55.17
PP00389G00020	Physcomitrella patens	0.0	554	495	53.74
RCC4223.04g03590	Picochlorum_RCC4223	0.0	551	442	58.14
PP00002G01050	Physcomitrella patens	0.0	550	439	58.31
OM_19G00580	Ostreococcus mediterraneus	0.0	547	483	55.69
MRCC299_01G02830	Micromonas sp RCC299	0.0	545	456	58.11
OL19G00480	Ostreococcus lucimarinus	0.0	544	474	56.54
AP00G21300	Auxenochlorella protothecoides	0.0	543	472	55.30
CV00G16310	Coccomyxa subellipsoidea C-169	0.0	538	435	59.08
PP00175G00120	Physcomitrella patens	0.0	538	438	56.85
ORCC809_19G00660	Ostreococcus sp RCC809	0.0	535	442	57.92
AC00G03580	Asterochloris sp. Cgr-DA1pho v2.0	0.0	535	433	57.51
ATR_00011G00670	Amborella trichopoda	0.0	534	438	56.39
OS03G52460	Oryza sativa	0.0	532	445	56.40
AT5G19220	Arabidopsis thaliana	0.0	531	438	57.08
MP02G03930	Micromonas pusilla strain CCMP1545	0.0	530	461	56.40
PP00036G00820	Physcomitrella patens	0.0	531	495	52.73
ATR_00003G01250	Amborella trichopoda	0.0	530	440	57.50
OT_20G00500	Ostreococcus tauri	0.0	529	484	53.31
AT1G27680	Arabidopsis thaliana	0.0	529	439	56.72
HE0000G08380	Helicosporidium sp.	0.0	524	434	56.22
PP00397G00090	Physcomitrella patens	0.0	526	439	57.18
PP00237G00200	Physcomitrella patens	3e-180	525	468	54.70
CR13G01480	Chlamydomonas reinhardtii	3e-179	521	442	57.01
PP00098G00350	Physcomitrella patens	1e-178	521	452	55.53
OS07G13980	Oryza sativa	4e-177	515	438	56.39
BPRRCC1105_08G01200	Bathycoccus prasinos	5e-175	509	484	52.07
VC00G25810	Volvox carteri	2e-173	506	442	54.98
AT4G39210	Arabidopsis thaliana	7e-165	484	478	49.58
AT2G21590	Arabidopsis thaliana	6e-164	482	445	52.58
OS01G44220	Oryza sativa	7e-159	469	483	48.03
OS05G50380	Oryza sativa	2e-158	468	477	48.64
ATR_00066G00870	Amborella trichopoda	7e-148	438	448	49.55
AT1G05610	Arabidopsis thaliana	2e-138	415	435	46.44
CV00G08610	Coccomyxa subellipsoidea C-169	8e-106	333	467	40.47
AP00G64920	Auxenochlorella protothecoides	1e-103	327	447	39.82
AC00G62960	Asterochloris sp. Cgr-DA1pho v2.0	8e-102	322	482	38.80
CNC64A_008G00870	Chlorella sp NC64A	3e-93	297	447	36.24
PI00G51900	Picochlorum sp. SENEW3 (SE3)	2e-92	298	448	36.16
RCC4223.08g01530	Picochlorum_RCC4223	2e-89	290	447	35.35
AC00G62950	Asterochloris sp. Cgr-DA1pho v2.0	6e-88	288	539	35.06
ATR_00025G00200	Amborella trichopoda	1e-83	268	217	57.14
HE0000G05360	Helicosporidium sp.	3e-83	270	418	37.08
OL07G03450	Ostreococcus lucimarinus	2e-78	259	488	34.43
ORCC809_07G03620	Ostreococcus sp RCC809	7e-74	248	510	32.75
CR16G08620	Chlamydomonas reinhardtii	1e-73	249	523	31.55
PI00G16260	Picochlorum sp. SENEW3 (SE3)	2e-72	247	457	33.26
OT_07G03530	Ostreococcus tauri	9e-68	233	499	32.46
OM_06G03760	Ostreococcus mediterraneus	2e-66	230	462	33.12
ATR_00025G00210	Amborella trichopoda	1e-65	218	205	48.29
CR07G04770	Chlamydomonas reinhardtii	9e-62	220	432	34.49
MRCC299_02G06030	Micromonas sp RCC299	1e-61	214	462	30.95
RCC4223.02g06270	Picochlorum_RCC4223	2e-61	218	449	31.63
CNC64A_001G02970	Chlorella sp NC64A	3e-54	194	203	48.77
MP04G04470	Micromonas pusilla strain CCMP1545	1e-51	189	474	31.65
BPRRCC1105_04G04120	Bathycoccus prasinos	8e-47	177	492	27.64
VC00G141830	Volvox carteri	8e-42	162	248	34.27
VC00G50190	Volvox carteri	7e-36	142	154	48.05
VC00G94250	Volvox carteri	2e-25	113	149	42.28
pte765190	Paramecium tetraurelia	3e-09	62.8	380	22.11
pte744060	Paramecium tetraurelia	6e-09	61.6	380	21.84
ccr140500	Chondrus crispus	1e-08	60.8	378	23.02
CV00G39210	Coccomyxa subellipsoidea C-169	5e-07	55.8	436	20.87
CNC64A_001G01880	Chlorella sp NC64A	8e-07	55.1	373	21.18
AP00G33690	Auxenochlorella protothecoides	2e-06	53.9	372	20.43
MP05G01720	Micromonas pusilla strain CCMP1545	1e-05	52.4	361	21.88

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
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