Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS07G36700	Oryza sativa	0.0	1770	861	100.00
OS07G36690	Oryza sativa	0.0	1704	859	96.97
OS07G36740	Oryza sativa	0.0	1439	852	86.62
OS07G36630	Oryza sativa	0.0	1097	817	63.28
OS07G36610	Oryza sativa	0.0	1036	800	63.12
OS07G36750	Oryza sativa	0.0	1035	813	60.15
OS08G06380	Oryza sativa	0.0	845	861	51.45
OS06G02180	Oryza sativa	0.0	825	867	46.71
ATR_00048G00590	Amborella trichopoda	0.0	808	882	46.03
OS10G42750	Oryza sativa	0.0	802	881	44.95
AT5G16910	Arabidopsis thaliana	0.0	794	872	44.61
AT3G03050	Arabidopsis thaliana	0.0	793	891	44.33
PP00310G00070	Physcomitrella patens	0.0	793	864	45.37
PP00057G00480	Physcomitrella patens	0.0	791	877	45.15
ATR_00022G01210	Amborella trichopoda	0.0	788	882	45.12
PP00111G00250	Physcomitrella patens	0.0	786	867	44.64
PP00269G00120	Physcomitrella patens	0.0	777	866	44.57
PP00111G00180	Physcomitrella patens	0.0	778	866	44.69
PP00243G00010	Physcomitrella patens	0.0	777	884	43.89
PP00243G00060	Physcomitrella patens	0.0	777	880	44.66
AT1G02730	Arabidopsis thaliana	0.0	777	874	45.42
AT2G33100	Arabidopsis thaliana	0.0	768	901	42.84
AT4G38190	Arabidopsis thaliana	0.0	770	844	44.91
ATR_00019G03800	Amborella trichopoda	0.0	766	880	45.00
OS12G36890	Oryza sativa	0.0	764	924	45.35
AT1G32180	Arabidopsis thaliana	0.0	731	869	42.92
PP00068G00840	Physcomitrella patens	0.0	736	859	43.77
OS06G22980	Oryza sativa	0.0	725	891	42.65
OS08G25710	Oryza sativa	0.0	719	858	43.24
OS10G20260	Oryza sativa	0.0	675	822	47.93
ATR_00137G00140	Amborella trichopoda	0.0	598	834	38.73
OS09G25490	Oryza sativa	0.0	597	834	38.97
AT5G64740	Arabidopsis thaliana	0.0	595	856	38.20
AT5G09870	Arabidopsis thaliana	0.0	591	876	37.79
AT5G17420	Arabidopsis thaliana	0.0	589	853	37.16
PP00213G00010	Physcomitrella patens	0.0	580	890	36.29
AT2G21770	Arabidopsis thaliana	0.0	580	881	37.80
AT4G18780	Arabidopsis thaliana	0.0	573	848	37.62
OS01G54620	Oryza sativa	0.0	572	858	37.41
AT4G39350	Arabidopsis thaliana	0.0	570	856	38.43
ATR_00081G00760	Amborella trichopoda	0.0	567	878	36.67
OS05G08370	Oryza sativa	0.0	565	882	37.30
ATR_00017G02090	Amborella trichopoda	0.0	559	881	37.80
PP00029G01150	Physcomitrella patens	5e-179	553	868	35.60
OS03G59340	Oryza sativa	1e-178	551	862	35.96
AT5G05170	Arabidopsis thaliana	5e-178	549	864	36.23
ATR_00045G01550	Amborella trichopoda	3e-177	546	847	36.84
OS03G62090	Oryza sativa	4e-174	540	870	36.32
ATR_00057G00940	Amborella trichopoda	6e-155	474	585	43.08
PP00090G01250	Physcomitrella patens	1e-128	420	860	32.09
ATR_00002G02960	Amborella trichopoda	1e-124	398	695	36.26
PP00008G00780	Physcomitrella patens	7e-121	391	433	46.42
OS10G32980	Oryza sativa	3e-118	391	426	46.95
PP00112G00250	Physcomitrella patens	1e-116	387	425	46.35
AT5G44030	Arabidopsis thaliana	2e-116	386	426	47.18
ATR_00067G02090	Amborella trichopoda	1e-115	383	426	46.24
ATR_00170G00010	Amborella trichopoda	1e-115	380	423	46.34
PP00030G00170	Physcomitrella patens	2e-115	384	441	45.35
ATR_00022G00640	Amborella trichopoda	1e-114	382	473	43.55
ATR_00103G00760	Amborella trichopoda	2e-114	381	425	45.65
OS07G24190	Oryza sativa	2e-112	376	426	45.77
OS07G14850	Oryza sativa	2e-112	376	426	45.54
OS07G10770	Oryza sativa	7e-112	374	425	45.18
AT4G32410	Arabidopsis thaliana	4e-111	372	442	44.57
AT2G25540	Arabidopsis thaliana	1e-110	370	442	44.12
OS06G39970	Oryza sativa	4e-103	346	890	30.45
OS10G20090	Oryza sativa	1e-102	341	737	32.70
AT1G55850	Arabidopsis thaliana	1e-95	322	691	32.13
ATR_00017G00080	Amborella trichopoda	3e-95	320	701	29.24
ATR_00017G01730	Amborella trichopoda	8e-94	318	791	28.07
AT2G32530	Arabidopsis thaliana	2e-93	317	806	29.78
OS09G30120	Oryza sativa	6e-92	312	688	29.36
PP00059G01570	Physcomitrella patens	2e-91	305	598	32.44
AT2G32540	Arabidopsis thaliana	4e-91	310	782	30.31
OS09G30130	Oryza sativa	6e-91	309	687	30.57
AT2G32620	Arabidopsis thaliana	3e-90	308	692	31.21
ATR_00061G02350	Amborella trichopoda	2e-89	305	790	27.59
AT2G32610	Arabidopsis thaliana	8e-88	301	806	28.91
ATR_00021G02120	Amborella trichopoda	4e-87	299	788	30.33
ATR_00057G00930	Amborella trichopoda	3e-80	276	288	48.96
AT4G15290	Arabidopsis thaliana	3e-80	281	697	29.56
AT4G24010	Arabidopsis thaliana	1e-79	279	717	27.48
OS02G49332	Oryza sativa	3e-78	275	694	27.52
AT4G15320	Arabidopsis thaliana	8e-74	264	650	30.31
AT4G24000	Arabidopsis thaliana	1e-73	261	713	27.21
AT4G23990	Arabidopsis thaliana	1e-73	262	732	26.64
PP00189G00480	Physcomitrella patens	8e-62	224	380	32.11
PP00189G00510	Physcomitrella patens	8e-62	224	380	32.11
OS04G35020	Oryza sativa	1e-53	203	496	30.24
OS12G29300	Oryza sativa	1e-53	191	172	56.98
ATR_00061G02330	Amborella trichopoda	6e-49	186	443	31.60
ATR_00017G00110	Amborella trichopoda	7e-42	166	308	32.47
OS07G36680	Oryza sativa	8e-39	149	76	92.11
PP00059G01580	Physcomitrella patens	2e-32	132	163	41.72
OS04G35030	Oryza sativa	7e-32	134	271	33.58
OS06G11050	Oryza sativa	8e-24	108	86	62.79
PP00015G00170	Physcomitrella patens	3e-21	95.9	86	53.49
OS09G30105	Oryza sativa	2e-17	88.6	152	34.87
ATR_00002G02970	Amborella trichopoda	6e-17	85.5	172	32.56
PP00120G00840	Physcomitrella patens	2e-15	79.3	72	50.00
ATR_00061G02320	Amborella trichopoda	1e-14	76.3	73	41.10
ES0004G00460	Ectocarpus siliculosus	7e-14	80.1	376	23.67
ES0231G00120	Ectocarpus siliculosus	8e-10	66.6	379	22.43
ATR_00067G02080	Amborella trichopoda	1e-07	56.2	37	56.76
ccr13740	Chondrus crispus	5e-06	54.3	198	26.77
ccr65060	Chondrus crispus	5e-06	54.3	149	29.53
PP00213G00500	Physcomitrella patens	7e-06	50.4	45	44.44

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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