Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS06G15910	Oryza sativa	0.0	1585	773	100.00
OS02G49760	Oryza sativa	0.0	1204	764	77.75
ATR_00006G03200	Amborella trichopoda	0.0	1062	780	67.69
AT1G70300	Arabidopsis thaliana	0.0	1049	793	65.20
AT5G14880	Arabidopsis thaliana	0.0	1041	790	65.70
OS06G42030	Oryza sativa	0.0	1040	834	64.75
OS07G48130	Oryza sativa	0.0	955	796	60.30
ATR_00007G01980	Amborella trichopoda	0.0	952	769	59.95
AT2G40540	Arabidopsis thaliana	0.0	946	801	60.67
OS03G21890	Oryza sativa	0.0	922	804	57.96
ATR_00016G02450	Amborella trichopoda	0.0	897	795	55.97
PP00165G00700	Physcomitrella patens	0.0	863	771	55.77
OS07G47350	Oryza sativa	0.0	831	771	53.83
ATR_00057G02100	Amborella trichopoda	0.0	820	784	53.83
OS01G70940	Oryza sativa	0.0	816	791	50.44
ATR_00007G01330	Amborella trichopoda	0.0	802	776	53.35
PP00016G01310	Physcomitrella patens	0.0	796	777	52.90
PP00488G00070	Physcomitrella patens	0.0	795	759	52.31
PP00033G01540	Physcomitrella patens	0.0	789	765	52.03
OS01G27170	Oryza sativa	0.0	786	802	51.12
PP00251G00170	Physcomitrella patens	0.0	770	771	51.23
PP00025G01700	Physcomitrella patens	0.0	769	762	51.44
PP00019G00330	Physcomitrella patens	0.0	761	769	51.76
PP00091G00700	Physcomitrella patens	0.0	757	767	50.46
PP00244G00290	Physcomitrella patens	0.0	755	758	50.40
PP00201G00620	Physcomitrella patens	0.0	753	771	49.94
AT3G02050	Arabidopsis thaliana	0.0	753	792	52.27
AT2G30070	Arabidopsis thaliana	0.0	718	607	55.85
AT4G23640	Arabidopsis thaliana	0.0	720	767	49.02
ATR_00176G00120	Amborella trichopoda	0.0	712	765	49.54
OS06G45940	Oryza sativa	0.0	708	782	49.49
PP00143G00490	Physcomitrella patens	0.0	646	773	44.76
PP00096G00680	Physcomitrella patens	0.0	644	772	44.04
ATR_00125G00310	Amborella trichopoda	0.0	642	760	45.39
PP00006G00270	Physcomitrella patens	0.0	637	751	43.14
OS09G38960	Oryza sativa	0.0	625	765	43.14
PP00029G01040	Physcomitrella patens	0.0	622	758	41.56
PP00118G00340	Physcomitrella patens	0.0	616	785	43.69
OS04G52390	Oryza sativa	0.0	615	761	43.36
AT1G60160	Arabidopsis thaliana	0.0	614	770	42.99
OS09G21000	Oryza sativa	0.0	605	766	40.73
ATR_00088G00040	Amborella trichopoda	0.0	599	779	43.13
PP00074G00570	Physcomitrella patens	0.0	593	750	41.33
AT2G35060	Arabidopsis thaliana	0.0	592	748	43.32
AT1G31120	Arabidopsis thaliana	0.0	591	763	43.91
ATR_00005G00100	Amborella trichopoda	0.0	588	760	41.71
ATR_00016G02520	Amborella trichopoda	0.0	587	787	39.39
ATR_00176G00310	Amborella trichopoda	0.0	579	778	39.72
AT4G13420	Arabidopsis thaliana	0.0	573	771	38.78
AT4G19960	Arabidopsis thaliana	0.0	568	777	42.21
PP00134G00600	Physcomitrella patens	0.0	548	762	40.55
OS07G32530	Oryza sativa	1e-174	531	794	38.54
AT4G33530	Arabidopsis thaliana	4e-174	530	779	38.77
ATR_00057G02290	Amborella trichopoda	6e-174	525	603	43.95
OS01G70490	Oryza sativa	2e-173	525	768	36.07
AT5G09400	Arabidopsis thaliana	6e-169	516	771	38.52
PP00166G00210	Physcomitrella patens	7e-168	516	759	37.81
OS03G37830	Oryza sativa	2e-167	511	793	36.95
OS08G10550	Oryza sativa	2e-163	493	575	44.35
OS04G32920	Oryza sativa	6e-163	499	787	36.09
OS02G31910	Oryza sativa	2e-162	496	766	35.51
OS03G37930	Oryza sativa	2e-160	492	800	36.00
ATR_00022G00710	Amborella trichopoda	3e-160	489	616	42.37
OS02G31940	Oryza sativa	2e-159	488	757	35.93
OS03G37840	Oryza sativa	6e-158	486	767	34.55
OS09G27580	Oryza sativa	3e-153	471	588	42.01
OS04G52120	Oryza sativa	9e-153	474	770	35.45
OS08G36340	Oryza sativa	2e-152	468	707	38.33
OS08G39950	Oryza sativa	3e-152	469	615	40.16
CV00G67780	Coccomyxa subellipsoidea C-169	1e-149	458	556	43.88
ATR_00024G00790	Amborella trichopoda	2e-149	462	757	35.80
OS01G70660	Oryza sativa	2e-147	457	610	41.31
AC00G86590	Asterochloris sp. Cgr-DA1pho v2.0	9e-143	447	786	34.86
ATR_00002G04360	Amborella trichopoda	2e-140	427	430	50.93
CV00G38060	Coccomyxa subellipsoidea C-169	2e-132	413	607	37.89
CV00G21730	Coccomyxa subellipsoidea C-169	8e-128	400	558	41.76
AC00G46840	Asterochloris sp. Cgr-DA1pho v2.0	3e-126	401	681	34.95
AC00G40290	Asterochloris sp. Cgr-DA1pho v2.0	4e-126	397	571	37.13
CV00G15080	Coccomyxa subellipsoidea C-169	6e-124	400	658	34.80
AC00G46850	Asterochloris sp. Cgr-DA1pho v2.0	2e-122	402	636	35.85
AP00G43680	Auxenochlorella protothecoides	2e-122	393	834	31.65
CV00G82010	Coccomyxa subellipsoidea C-169	2e-122	385	568	40.67
ATR_00019G01430	Amborella trichopoda	5e-112	356	501	41.72
DDB_G0288055	Dictyostelium discoideum	2e-93	314	764	28.93
CM06G00730	Cyanidioschyzon merolae	6e-90	306	584	30.99
gsu12760	Galdieria sulphuraria	9e-88	299	586	31.57
gsu70610	Galdieria sulphuraria	1e-86	295	630	29.21
VC00G125960	Volvox carteri	3e-86	305	511	35.42
CR17G04030	Chlamydomonas reinhardtii	2e-85	300	373	43.97
ATR_00002G04350	Amborella trichopoda	2e-84	278	337	44.81
CR17G04090	Chlamydomonas reinhardtii	6e-80	283	350	43.14
CR04G00340	Chlamydomonas reinhardtii	7e-80	283	350	43.43
CR17G04020	Chlamydomonas reinhardtii	5e-79	281	350	42.57
emh465340	Emiliania huxleyi	2e-78	267	495	33.33
AC00G93020	Asterochloris sp. Cgr-DA1pho v2.0	1e-71	260	604	32.12
emh567740	Emiliania huxleyi	1e-65	237	620	29.68
ATR_00057G02270	Amborella trichopoda	4e-63	227	453	34.66
ATR_00019G01440	Amborella trichopoda	6e-61	213	270	42.22
ATR_00057G02310	Amborella trichopoda	1e-60	213	252	39.68
CR04G00090	Chlamydomonas reinhardtii	2e-60	227	375	38.13
emh567820	Emiliania huxleyi	5e-56	213	467	31.69
AC00G00990	Asterochloris sp. Cgr-DA1pho v2.0	3e-53	203	338	34.91
ATR_00057G02300	Amborella trichopoda	2e-43	164	345	29.28
ATR_00003G03830	Amborella trichopoda	8e-42	160	251	32.27
ATR_00057G02260	Amborella trichopoda	1e-41	158	184	42.93
CNC64A_030G00120	Chlorella sp NC64A	7e-39	150	258	38.76
ATR_00049G01710	Amborella trichopoda	9e-36	140	250	32.00
ATR_00034G01300	Amborella trichopoda	4e-35	139	255	31.76
ATR_00034G01260	Amborella trichopoda	3e-22	100	171	38.01
OS03G55370	Oryza sativa	2e-17	86.3	57	71.93
ATR_00029G03120	Amborella trichopoda	2e-13	74.7	85	43.53
ATR_00034G01290	Amborella trichopoda	4e-12	70.9	137	32.85
AC00G24940	Asterochloris sp. Cgr-DA1pho v2.0	2e-10	65.1	155	34.84
OS03G30770	Oryza sativa	6e-10	63.2	67	56.72
OS09G18400	Oryza sativa	2e-08	58.9	67	61.19
ATR_00070G01290	Amborella trichopoda	3e-08	57.8	49	53.06

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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