Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS06G12460	Oryza sativa	0.0	1267	612	100.00
ATR_00040G02570	Amborella trichopoda	0.0	630	582	53.78
OS08G33740	Oryza sativa	0.0	596	571	53.24
OS02G09930	Oryza sativa	0.0	591	583	53.00
AT5G22740	Arabidopsis thaliana	0.0	590	583	50.43
OS10G26630	Oryza sativa	0.0	585	564	53.90
PP00036G00370	Physcomitrella patens	0.0	576	586	50.51
PP00036G01070	Physcomitrella patens	0.0	575	586	49.66
AT1G23480	Arabidopsis thaliana	0.0	570	575	49.57
AT5G03760	Arabidopsis thaliana	0.0	559	574	50.52
OS07G43710	Oryza sativa	0.0	560	573	49.74
OS03G26044	Oryza sativa	0.0	556	576	50.69
AT2G35650	Arabidopsis thaliana	0.0	555	558	48.57
AT4G13410	Arabidopsis thaliana	0.0	544	569	47.63
OS03G07350	Oryza sativa	0.0	540	391	63.94
OS06G42020	Oryza sativa	0.0	533	385	62.60
AT1G24070	Arabidopsis thaliana	0.0	531	565	47.79
OS02G51060	Oryza sativa	6e-171	504	594	44.61
AT4G16590	Arabidopsis thaliana	1e-166	488	383	57.18
PP00065G00990	Physcomitrella patens	3e-166	493	396	59.09
AT5G16190	Arabidopsis thaliana	3e-165	486	384	58.33
AT3G56000	Arabidopsis thaliana	3e-152	456	386	55.18
ATR_00072G01360	Amborella trichopoda	1e-133	401	267	67.04
PP00224G00220	Physcomitrella patens	1e-119	378	621	35.43
AT2G24630	Arabidopsis thaliana	5e-115	365	509	39.88
AT3G07330	Arabidopsis thaliana	5e-114	362	606	35.64
AT3G28180	Arabidopsis thaliana	9e-111	353	501	38.92
OS09G25900	Oryza sativa	2e-110	353	512	39.06
PP00019G01110	Physcomitrella patens	3e-110	353	620	34.19
PP00015G00680	Physcomitrella patens	6e-108	347	525	37.14
OS03G56060	Oryza sativa	2e-106	335	424	42.45
OS07G03260	Oryza sativa	1e-105	341	503	39.56
OS05G43530	Oryza sativa	2e-105	340	591	36.89
PI00G51280	Picochlorum sp. SENEW3 (SE3)	7e-103	332	491	37.27
OM_17G00960	Ostreococcus mediterraneus	7e-103	331	582	34.02
PP00089G01080	Physcomitrella patens	1e-102	333	422	41.47
AT4G07960	Arabidopsis thaliana	1e-102	333	590	35.93
OS09G26770	Oryza sativa	1e-102	327	351	49.86
PP00373G00150	Physcomitrella patens	2e-102	333	335	46.87
PP00164G00010	Physcomitrella patens	2e-102	332	517	37.91
AT4G31590	Arabidopsis thaliana	1e-101	330	332	47.89
PP00162G00740	Physcomitrella patens	4e-101	329	420	40.48
OS01G56130	Oryza sativa	6e-101	328	591	35.70
ATR_00019G01680	Amborella trichopoda	1e-100	327	321	49.22
OS08G15420	Oryza sativa	3e-99	325	318	48.43
ATR_00065G00270	Amborella trichopoda	1e-98	323	512	35.94
RCC4223.04g03450	Picochlorum_RCC4223	1e-98	321	499	36.07
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	7e-97	313	523	34.23
MP16G01280	Micromonas pusilla strain CCMP1545	2e-94	305	406	39.66
ATR_00013G02120	Amborella trichopoda	8e-94	308	318	47.80
MRCC299_10G04230	Micromonas sp RCC299	6e-93	301	377	40.58
BPRRCC1105_06G01240	Bathycoccus prasinos	2e-92	304	389	38.56
HE0000G41170	Helicosporidium sp.	8e-92	302	503	36.38
OL16G00900	Ostreococcus lucimarinus	4e-91	298	571	33.45
CV00G12800	Coccomyxa subellipsoidea C-169	4e-91	299	388	39.69
AP00G21430	Auxenochlorella protothecoides	1e-90	299	492	34.76
CV00G12810	Coccomyxa subellipsoidea C-169	1e-89	291	392	40.05
OT_17G00830	Ostreococcus tauri	4e-88	290	310	43.55
ORCC809_16G01780	Ostreococcus sp RCC809	1e-84	282	375	39.47
CNC64A_025G01180	Chlorella sp NC64A	3e-74	256	494	33.81
VC00G68920	Volvox carteri	2e-58	211	449	31.18
CR06G04470	Chlamydomonas reinhardtii	8e-57	208	422	32.46
emh181270	Emiliania huxleyi	4e-42	160	317	35.33
emh488170	Emiliania huxleyi	4e-42	160	317	35.33
ORCC809_20G02860	Ostreococcus sp RCC809	2e-23	109	332	27.41
OT_14G02980	Ostreococcus tauri	2e-18	93.6	222	32.43
OM_13G00450	Ostreococcus mediterraneus	6e-16	85.5	221	28.51
OL20G02910	Ostreococcus lucimarinus	1e-15	84.7	220	27.73
PP00435G00020	Physcomitrella patens	8e-14	73.6	87	48.28
ES0097G00210	Ectocarpus siliculosus	6e-13	76.3	218	27.52
ES0097G00300	Ectocarpus siliculosus	7e-13	76.3	171	29.82
emh647580	Emiliania huxleyi	9e-12	72.0	307	23.78
ES0200G00060	Ectocarpus siliculosus	4e-11	70.1	190	31.58
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	3e-10	67.0	250	24.40
CV00G83580	Coccomyxa subellipsoidea C-169	8e-10	66.2	383	23.24
CV00G40830	Coccomyxa subellipsoidea C-169	1e-09	65.5	396	23.23
DDB_G0269124	Dictyostelium discoideum	3e-09	63.9	182	26.37
AC00G95180	Asterochloris sp. Cgr-DA1pho v2.0	5e-09	63.2	309	23.30
CV00G28250	Coccomyxa subellipsoidea C-169	1e-08	62.4	254	22.44
CV00G13860	Coccomyxa subellipsoidea C-169	1e-08	62.4	254	22.83
PI00G46760	Picochlorum sp. SENEW3 (SE3)	1e-08	62.4	264	22.73
CV00G01670	Coccomyxa subellipsoidea C-169	2e-08	61.6	303	23.43
RCC4223.10g01020	Picochlorum_RCC4223	4e-08	60.8	264	22.73
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	59.3	253	23.32
ES0097G00120	Ectocarpus siliculosus	7e-07	56.2	120	34.17
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	4e-06	54.3	246	23.98
ES0185G00090	Ectocarpus siliculosus	6e-06	53.5	169	28.40

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment