Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS03G01800	Oryza sativa	0.0	650	311	100.00
OS10G39840	Oryza sativa	1e-162	463	276	77.90
OS07G29750	Oryza sativa	2e-154	441	296	69.26
AT2G36870	Arabidopsis thaliana	2e-127	373	273	62.27
ATR_00082G00420	Amborella trichopoda	1e-126	371	273	63.00
AT3G44990	Arabidopsis thaliana	5e-117	346	298	57.05
OS02G57770	Oryza sativa	2e-114	340	280	59.64
ATR_00024G00080	Amborella trichopoda	5e-76	242	266	43.23
ATR_00013G00910	Amborella trichopoda	9e-76	238	220	51.82
AT1G14720	Arabidopsis thaliana	4e-75	240	301	40.20
OS03G13570	Oryza sativa	9e-75	239	263	45.25
OS02G03550	Oryza sativa	5e-74	238	274	44.89
AT1G32170	Arabidopsis thaliana	2e-71	231	273	42.12
AT2G01850	Arabidopsis thaliana	2e-71	231	299	39.13
AT1G10550	Arabidopsis thaliana	2e-68	222	274	40.88
OS10G02770	Oryza sativa	8e-68	221	265	43.40
OS03G63760	Oryza sativa	1e-64	214	310	38.39
AT4G18990	Arabidopsis thaliana	3e-64	213	283	38.16
OS02G46910	Oryza sativa	2e-62	207	277	43.32
OS06G48180	Oryza sativa	1e-61	204	296	39.19
OS06G48200	Oryza sativa	1e-61	204	284	40.49
OS09G23220	Oryza sativa	2e-61	204	287	39.37
OS10G42670	Oryza sativa	4e-61	204	267	40.45
AT3G25050	Arabidopsis thaliana	7e-61	202	267	39.33
AT3G23730	Arabidopsis thaliana	2e-60	201	274	40.51
AT4G14130	Arabidopsis thaliana	2e-59	198	267	40.82
AT5G57550	Arabidopsis thaliana	2e-59	198	263	40.68
PP00005G00910	Physcomitrella patens	4e-59	201	245	42.45
OS04G51460	Oryza sativa	5e-59	197	261	41.76
PP00074G00080	Physcomitrella patens	7e-59	201	245	43.27
OS11G33270	Oryza sativa	1e-58	196	295	39.32
AT5G13870	Arabidopsis thaliana	2e-58	196	291	38.83
ATR_00065G01750	Amborella trichopoda	4e-58	195	289	37.02
ATR_00048G00580	Amborella trichopoda	5e-58	195	223	44.39
AT1G11545	Arabidopsis thaliana	6e-58	195	316	35.76
AT4G25810	Arabidopsis thaliana	2e-57	192	271	40.59
AT5G65730	Arabidopsis thaliana	3e-57	192	270	40.00
ATR_00004G02430	Amborella trichopoda	3e-57	192	259	39.00
AT2G06850	Arabidopsis thaliana	1e-56	191	287	39.37
AT5G57530	Arabidopsis thaliana	2e-56	190	272	38.97
OS08G13980	Oryza sativa	2e-56	191	252	42.86
AT5G57540	Arabidopsis thaliana	3e-56	189	268	39.55
OS06G48160	Oryza sativa	3e-56	190	268	41.42
AT4G30270	Arabidopsis thaliana	4e-56	189	268	39.18
AT5G57560	Arabidopsis thaliana	5e-56	189	271	39.11
ATR_00062G00020	Amborella trichopoda	9e-56	189	274	40.88
ATR_00019G03550	Amborella trichopoda	2e-55	187	270	38.52
ATR_00019G03570	Amborella trichopoda	4e-55	187	264	39.02
OS04G51450	Oryza sativa	4e-55	188	258	42.25
ATR_00453G00010	Amborella trichopoda	4e-55	188	280	38.57
ATR_00026G01160	Amborella trichopoda	5e-55	187	267	39.33
AT4G03210	Arabidopsis thaliana	7e-55	186	302	35.43
ATR_00065G01770	Amborella trichopoda	1e-54	186	287	36.24
PP00026G00650	Physcomitrella patens	1e-54	186	297	36.36
ATR_00016G02940	Amborella trichopoda	2e-54	185	273	39.19
AT4G25820	Arabidopsis thaliana	4e-54	184	266	39.85
AT2G18800	Arabidopsis thaliana	5e-54	184	277	39.71
ATR_00062G00050	Amborella trichopoda	5e-54	184	262	40.08
AT4G37800	Arabidopsis thaliana	9e-54	184	270	39.63
OS07G34580	Oryza sativa	1e-53	184	269	39.41
AT5G48070	Arabidopsis thaliana	1e-53	183	257	40.86
OS06G13040	Oryza sativa	2e-53	183	271	43.17
OS08G13920	Oryza sativa	1e-52	180	270	40.00
PP00168G00050	Physcomitrella patens	4e-52	180	265	37.74
PP00291G00470	Physcomitrella patens	4e-52	180	257	38.52
PP00004G00260	Physcomitrella patens	7e-52	179	301	34.88
AT4G13080	Arabidopsis thaliana	2e-50	175	265	38.11
PP00309G00220	Physcomitrella patens	3e-50	175	265	38.11
AT4G13090	Arabidopsis thaliana	6e-50	174	268	37.31
PP00618G00010	Physcomitrella patens	1e-49	176	257	38.13
PP00193G00050	Physcomitrella patens	1e-49	174	258	36.82
AT4G30280	Arabidopsis thaliana	1e-49	172	233	42.06
AT1G65310	Arabidopsis thaliana	2e-49	172	233	42.49
AT4G30290	Arabidopsis thaliana	6e-49	171	232	41.81
ATR_00026G01110	Amborella trichopoda	1e-47	165	215	42.33
OS08G14210	Oryza sativa	2e-47	169	304	34.54
OS08G14200	Oryza sativa	3e-47	166	260	37.69
OS04G51520	Oryza sativa	5e-47	167	288	36.46
PP00309G00140	Physcomitrella patens	5e-47	166	237	39.66
ATR_00026G01070	Amborella trichopoda	5e-47	165	255	38.43
AT2G14620	Arabidopsis thaliana	6e-47	166	274	36.50
PP00309G00230	Physcomitrella patens	3e-46	164	256	35.16
OS06G48170	Oryza sativa	4e-46	164	265	34.72
OS02G17880	Oryza sativa	4e-46	164	268	38.06
ATR_00019G03590	Amborella trichopoda	5e-46	164	278	33.09
PP00195G00150	Physcomitrella patens	1e-45	162	292	36.64
AT4G28850	Arabidopsis thaliana	2e-45	161	276	35.51
PP00272G00150	Physcomitrella patens	1e-44	159	266	35.71
PP00168G00160	Physcomitrella patens	1e-43	157	257	35.02
PP00004G00240	Physcomitrella patens	5e-43	155	256	35.16
OS02G17900	Oryza sativa	1e-42	154	272	34.93
PP00309G00200	Physcomitrella patens	2e-42	152	234	40.17
OS06G22919	Oryza sativa	1e-41	152	279	35.84
PP00156G00440	Physcomitrella patens	2e-41	151	263	34.60
PP00156G00420	Physcomitrella patens	2e-41	151	263	34.60
PP00122G00290	Physcomitrella patens	3e-41	150	243	37.86
ATR_00026G01130	Amborella trichopoda	5e-41	147	197	43.65
PP00213G00650	Physcomitrella patens	6e-41	150	304	33.55
ATR_00062G00060	Amborella trichopoda	6e-41	147	188	41.49
PP00081G01240	Physcomitrella patens	1e-40	149	310	33.87
PP00346G00070	Physcomitrella patens	1e-40	151	267	35.21
PP00410G00130	Physcomitrella patens	2e-40	149	266	33.46
OS04G51510	Oryza sativa	2e-40	147	250	34.40
AT3G48580	Arabidopsis thaliana	5e-40	147	267	33.71
PP00011G01530	Physcomitrella patens	2e-39	146	316	32.28
ATR_00109G01360	Amborella trichopoda	1e-38	141	194	40.21
PP00486G00100	Physcomitrella patens	5e-37	139	271	34.32
PP00486G00080	Physcomitrella patens	5e-37	139	271	34.32
PP00019G00220	Physcomitrella patens	2e-36	138	274	35.04
ATR_00026G01150	Amborella trichopoda	1e-35	132	157	45.86
PP00048G00500	Physcomitrella patens	1e-34	133	298	29.87
PP00141G00620	Physcomitrella patens	4e-34	131	247	36.84
PP00089G00910	Physcomitrella patens	1e-31	124	238	34.45
ATR_00019G03580	Amborella trichopoda	3e-31	120	132	46.97
ATR_00069G00950	Amborella trichopoda	2e-27	112	187	37.43
PP00353G00180	Physcomitrella patens	3e-25	106	159	39.62
OS03G02610	Oryza sativa	1e-23	102	186	36.56
PP00089G00960	Physcomitrella patens	4e-23	100	148	41.89
ATR_01729G00020	Amborella trichopoda	2e-22	94.0	69	62.32
PP00037G01500	Physcomitrella patens	8e-17	84.7	179	29.05
PP00024G01140	Physcomitrella patens	1e-15	80.9	175	34.29
ATR_00004G02620	Amborella trichopoda	2e-11	63.9	77	44.16
ATR_00055G01550	Amborella trichopoda	3e-10	61.2	111	32.43
PP00002G02710	Physcomitrella patens	5e-08	53.9	84	39.29
YLR213C	Saccharomyces cerevisiae strain S288C	1e-07	56.6	114	36.84
ATR_00062G00030	Amborella trichopoda	1e-07	53.1	95	34.74
ATR_00337G00020	Amborella trichopoda	5e-07	52.0	98	36.73
ATR_00062G00010	Amborella trichopoda	2e-06	51.2	98	38.78

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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