Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS02G49332	Oryza sativa	0.0	1547	746	100.00
OS09G30130	Oryza sativa	0.0	863	728	57.55
OS09G30120	Oryza sativa	0.0	848	721	57.28
ATR_00061G02350	Amborella trichopoda	0.0	756	742	50.54
AT1G55850	Arabidopsis thaliana	0.0	699	729	49.93
ATR_00061G02330	Amborella trichopoda	0.0	587	532	53.01
ATR_00021G02120	Amborella trichopoda	1e-170	516	689	39.91
AT4G23990	Arabidopsis thaliana	6e-156	478	673	39.52
AT4G24000	Arabidopsis thaliana	2e-152	468	677	36.19
AT4G24010	Arabidopsis thaliana	6e-151	466	664	37.65
ATR_00137G00140	Amborella trichopoda	3e-121	395	727	32.05
ATR_00017G01730	Amborella trichopoda	3e-118	380	694	34.73
AT5G17420	Arabidopsis thaliana	6e-116	380	793	31.27
ATR_00017G00080	Amborella trichopoda	2e-114	368	708	32.91
AT4G18780	Arabidopsis thaliana	2e-111	368	780	30.64
OS10G20090	Oryza sativa	8e-109	355	658	33.28
OS05G08370	Oryza sativa	3e-104	350	773	30.53
ATR_00170G00010	Amborella trichopoda	1e-102	342	701	30.53
AT2G32530	Arabidopsis thaliana	2e-99	330	757	30.25
AT2G32540	Arabidopsis thaliana	3e-99	329	726	31.27
AT2G32620	Arabidopsis thaliana	2e-92	311	712	31.18
AT4G15290	Arabidopsis thaliana	9e-92	310	731	31.05
OS10G20260	Oryza sativa	5e-91	309	654	32.26
AT4G38190	Arabidopsis thaliana	2e-89	309	774	27.91
OS07G36610	Oryza sativa	4e-89	305	714	29.83
AT2G32610	Arabidopsis thaliana	6e-87	296	730	29.59
OS07G36630	Oryza sativa	6e-85	294	713	27.35
OS01G54620	Oryza sativa	2e-84	294	343	43.44
ATR_00022G01210	Amborella trichopoda	3e-83	292	815	26.13
ATR_00017G02090	Amborella trichopoda	3e-82	289	344	43.02
PP00112G00250	Physcomitrella patens	4e-82	288	390	40.00
PP00029G01150	Physcomitrella patens	8e-82	288	379	40.11
PP00008G00780	Physcomitrella patens	1e-81	283	379	39.84
PP00213G00010	Physcomitrella patens	3e-81	285	344	42.15
ATR_00017G00110	Amborella trichopoda	3e-81	275	512	32.81
PP00030G00170	Physcomitrella patens	3e-81	286	385	40.78
AT5G05170	Arabidopsis thaliana	1e-80	284	344	43.02
PP00090G01250	Physcomitrella patens	3e-80	283	344	42.15
OS10G32980	Oryza sativa	3e-80	283	344	41.57
OS09G25490	Oryza sativa	5e-80	282	343	41.69
ATR_00067G02090	Amborella trichopoda	6e-80	281	344	41.57
AT2G25540	Arabidopsis thaliana	6e-80	282	382	40.84
OS07G36750	Oryza sativa	1e-79	279	708	28.11
ATR_00103G00760	Amborella trichopoda	1e-79	281	344	43.02
AT4G32410	Arabidopsis thaliana	2e-79	281	344	43.02
AT2G21770	Arabidopsis thaliana	2e-79	280	379	40.11
AT5G44030	Arabidopsis thaliana	3e-79	280	394	39.09
OS03G59340	Oryza sativa	4e-79	280	344	41.86
OS07G14850	Oryza sativa	4e-79	280	344	41.57
AT2G33100	Arabidopsis thaliana	1e-78	278	761	26.94
AT5G09870	Arabidopsis thaliana	1e-78	278	344	41.28
OS07G36700	Oryza sativa	1e-78	276	704	27.70
AT4G39350	Arabidopsis thaliana	1e-78	278	379	39.31
ATR_00081G00760	Amborella trichopoda	1e-78	278	344	42.73
OS07G36690	Oryza sativa	1e-78	276	704	27.70
AT5G64740	Arabidopsis thaliana	2e-78	278	344	41.57
OS07G10770	Oryza sativa	2e-78	278	344	41.86
ATR_00022G00640	Amborella trichopoda	3e-78	277	344	40.99
OS07G24190	Oryza sativa	8e-78	276	344	40.99
OS03G62090	Oryza sativa	2e-77	275	344	40.70
ATR_00002G02960	Amborella trichopoda	5e-77	268	408	37.50
OS07G36740	Oryza sativa	8e-77	271	709	27.36
OS04G35020	Oryza sativa	5e-76	267	673	29.57
AT4G15320	Arabidopsis thaliana	1e-75	266	735	28.57
ATR_00045G01550	Amborella trichopoda	3e-73	262	377	38.20
PP00243G00060	Physcomitrella patens	2e-70	255	436	36.24
PP00111G00180	Physcomitrella patens	5e-70	253	436	36.24
PP00269G00120	Physcomitrella patens	2e-68	249	434	35.25
PP00111G00250	Physcomitrella patens	2e-67	246	434	35.02
PP00243G00010	Physcomitrella patens	8e-67	244	434	35.25
OS08G06380	Oryza sativa	1e-66	243	427	34.66
PP00310G00070	Physcomitrella patens	3e-66	242	441	34.69
AT1G32180	Arabidopsis thaliana	2e-65	239	407	33.17
PP00057G00480	Physcomitrella patens	1e-64	238	449	33.63
ATR_00048G00590	Amborella trichopoda	3e-64	236	398	34.92
OS06G02180	Oryza sativa	1e-63	235	399	34.84
AT3G03050	Arabidopsis thaliana	2e-63	234	512	30.08
OS08G25710	Oryza sativa	8e-63	232	400	33.75
OS10G42750	Oryza sativa	2e-62	231	464	32.76
AT5G16910	Arabidopsis thaliana	2e-61	229	477	30.82
OS12G36890	Oryza sativa	2e-61	229	488	32.17
AT1G02730	Arabidopsis thaliana	5e-61	227	461	33.41
PP00068G00840	Physcomitrella patens	4e-60	224	345	38.55
OS06G22980	Oryza sativa	5e-59	220	434	31.11
OS06G39970	Oryza sativa	5e-58	216	344	38.37
ATR_00019G03800	Amborella trichopoda	1e-54	207	400	31.50
OS09G30105	Oryza sativa	5e-45	168	195	45.13
OS04G35030	Oryza sativa	1e-40	158	226	34.96
PP00189G00480	Physcomitrella patens	2e-33	140	132	46.97
PP00189G00510	Physcomitrella patens	2e-33	140	132	46.97
PP00059G01570	Physcomitrella patens	2e-31	133	156	41.67
ATR_00057G00930	Amborella trichopoda	2e-30	130	143	44.06
ATR_00057G00940	Amborella trichopoda	1e-27	122	151	42.38
ATR_00061G02320	Amborella trichopoda	1e-23	101	76	59.21
OS12G29300	Oryza sativa	4e-20	95.5	163	35.58
PP00015G00170	Physcomitrella patens	6e-20	91.7	92	42.39
PP00059G01580	Physcomitrella patens	9e-18	88.6	104	38.46
PP00120G00840	Physcomitrella patens	3e-12	69.3	97	35.05
OS07G36680	Oryza sativa	6e-11	67.0	72	44.44
ES0231G00040	Ectocarpus siliculosus	7e-10	66.6	265	26.04
ES0004G00460	Ectocarpus siliculosus	2e-07	58.9	210	25.24
ATR_00067G02080	Amborella trichopoda	7e-07	53.9	44	40.91

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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