Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: OS01G04950

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS01G04950	Oryza sativa	0.0	1192	581	100.00
AT3G54140	Arabidopsis thaliana	0.0	819	562	67.79
AT5G01180	Arabidopsis thaliana	0.0	818	565	66.90
ATR_00029G03190	Amborella trichopoda	0.0	811	558	71.33
ATR_00029G03220	Amborella trichopoda	0.0	792	558	67.38
PP00114G00050	Physcomitrella patens	0.0	780	577	65.34
OS07G01070	Oryza sativa	0.0	752	560	69.46
OS03G51050	Oryza sativa	0.0	737	569	63.09
AT2G02040	Arabidopsis thaliana	0.0	722	564	61.35
ATR_00024G00950	Amborella trichopoda	0.0	702	561	60.96
OS03G13240	Oryza sativa	0.0	665	562	55.87
AT1G62200	Arabidopsis thaliana	0.0	658	561	55.79
OS01G67630	Oryza sativa	0.0	625	560	59.11
OS03G13250	Oryza sativa	0.0	611	563	52.40
AT2G02020	Arabidopsis thaliana	0.0	602	562	51.96
ATR_00024G00980	Amborella trichopoda	0.0	594	564	55.32
PP00173G00410	Physcomitrella patens	0.0	590	568	50.18
ATR_00024G00990	Amborella trichopoda	0.0	586	563	54.53
PP00171G00030	Physcomitrella patens	0.0	565	528	51.52
PP00014G00620	Physcomitrella patens	0.0	551	572	47.03
PP00113G00080	Physcomitrella patens	0.0	543	584	48.29
OS03G13274	Oryza sativa	0.0	538	566	46.82
ATR_00067G01930	Amborella trichopoda	0.0	532	570	43.68
PP00298G00140	Physcomitrella patens	4e-180	530	571	46.58
PP00075G00110	Physcomitrella patens	4e-179	527	589	45.67
ATR_00067G01870	Amborella trichopoda	1e-177	523	569	44.29
PP00246G00590	Physcomitrella patens	3e-176	520	569	46.22
CV00G86190	Coccomyxa subellipsoidea C-169	2e-175	518	564	50.18
PP00116G00100	Physcomitrella patens	3e-174	515	575	46.61
ATR_00036G01320	Amborella trichopoda	5e-174	514	569	43.59
OS02G48570	Oryza sativa	1e-173	512	573	45.55
ATR_00256G00010	Amborella trichopoda	2e-173	512	565	44.25
ATR_00120G00460	Amborella trichopoda	7e-173	511	550	46.73
OS10G02240	Oryza sativa	3e-172	508	547	48.81
OS03G04570	Oryza sativa	5e-172	508	570	47.54
OS10G02260	Oryza sativa	3e-170	503	549	45.72
OS10G02100	Oryza sativa	3e-169	500	560	46.96
AT2G40460	Arabidopsis thaliana	8e-169	499	577	43.15
PP00400G00020	Physcomitrella patens	1e-168	498	540	47.04
HE0000G52310	Helicosporidium sp.	8e-168	499	558	46.77
OS10G33210	Oryza sativa	1e-167	498	569	44.64
ATR_00149G00300	Amborella trichopoda	3e-167	496	569	44.82
OS10G02220	Oryza sativa	2e-166	493	547	43.33
PP00133G00360	Physcomitrella patens	2e-166	494	573	45.20
ATR_00054G00270	Amborella trichopoda	2e-165	491	574	45.47
PP00389G00030	Physcomitrella patens	9e-165	491	566	43.64
AT4G21680	Arabidopsis thaliana	6e-163	485	574	44.08
OS10G33170	Oryza sativa	3e-162	484	567	44.97
PP00434G00170	Physcomitrella patens	6e-162	483	569	43.59
AP00G32420	Auxenochlorella protothecoides	9e-162	483	563	46.71
CNC64A_010G00890	Chlorella sp NC64A	5e-161	479	541	46.95
PP00071G00970	Physcomitrella patens	4e-160	481	568	45.25
AT5G46050	Arabidopsis thaliana	1e-159	476	578	43.77
OS10G02210	Oryza sativa	6e-159	474	539	43.97
OS10G22560	Oryza sativa	7e-158	471	549	45.36
AT5G46040	Arabidopsis thaliana	2e-157	471	568	43.31
PP00298G00190	Physcomitrella patens	9e-157	469	577	44.37
AT5G19640	Arabidopsis thaliana	2e-155	466	569	42.71
ATR_00104G00420	Amborella trichopoda	5e-154	461	569	42.53
ATR_00156G00390	Amborella trichopoda	4e-153	459	559	44.54
OS05G33960	Oryza sativa	5e-151	455	565	43.36
OS06G49250	Oryza sativa	6e-151	452	534	44.57
HE0000G08520	Helicosporidium sp.	7e-151	456	527	46.87
OS06G49220	Oryza sativa	7e-151	453	563	43.87
PP00302G00070	Physcomitrella patens	2e-150	455	551	41.56
AT1G68570	Arabidopsis thaliana	3e-150	452	583	43.57
AT1G32450	Arabidopsis thaliana	4e-150	453	563	42.27
AT3G54450	Arabidopsis thaliana	4e-149	448	556	39.21
ATR_00186G00140	Amborella trichopoda	5e-149	449	571	44.31
OS10G42870	Oryza sativa	8e-149	448	554	43.68
OS10G02080	Oryza sativa	7e-147	441	532	46.62
OS04G50950	Oryza sativa	2e-146	442	546	42.31
OS04G50940	Oryza sativa	4e-146	441	557	41.65
OS02G46460	Oryza sativa	4e-145	440	578	43.43
ATR_00165G00370	Amborella trichopoda	6e-145	439	581	41.82
ATR_00086G00940	Amborella trichopoda	6e-145	438	565	42.48
OS05G34030	Oryza sativa	4e-144	437	555	43.06
OS07G41250	Oryza sativa	1e-142	436	551	40.83
ATR_00002G04270	Amborella trichopoda	2e-142	432	566	38.52
PI00G42080	Picochlorum sp. SENEW3 (SE3)	2e-142	436	573	40.84
OS08G05910	Oryza sativa	3e-142	432	567	44.09
OS02G47090	Oryza sativa	6e-142	430	568	42.78
ATR_00016G00080	Amborella trichopoda	9e-142	433	565	42.12
OS10G02340	Oryza sativa	1e-141	429	540	45.37
OS06G15370	Oryza sativa	1e-141	430	569	42.88
OS05G34010	Oryza sativa	1e-141	430	585	40.17
AT2G26690	Arabidopsis thaliana	2e-141	429	573	43.63
AT1G22540	Arabidopsis thaliana	5e-141	427	559	41.68
OS03G48180	Oryza sativa	1e-140	427	559	40.61
AT3G53960	Arabidopsis thaliana	2e-140	427	580	39.31
ATR_00022G01870	Amborella trichopoda	2e-140	427	569	43.06
AP00G65500	Auxenochlorella protothecoides	3e-140	426	566	42.93
PI00G49640	Picochlorum sp. SENEW3 (SE3)	3e-140	427	546	42.67
AT5G13400	Arabidopsis thaliana	4e-140	427	573	40.66
OS01G37590	Oryza sativa	3e-139	424	554	44.04
RCC4223.18g01160	Picochlorum_RCC4223	3e-139	425	546	42.49
AT1G12110	Arabidopsis thaliana	1e-138	422	563	41.74
AT2G37900	Arabidopsis thaliana	4e-138	421	575	38.96
AP00G52100	Auxenochlorella protothecoides	4e-138	420	516	45.74
VC00G30280	Volvox carteri	1e-137	422	560	42.50
CV00G87420	Coccomyxa subellipsoidea C-169	3e-137	419	568	41.73
AT1G72140	Arabidopsis thaliana	1e-136	416	560	38.39
OS03G60850	Oryza sativa	5e-136	416	573	39.97
AC00G76010	Asterochloris sp. Cgr-DA1pho v2.0	1e-135	416	566	42.58
OS06G21900	Oryza sativa	3e-135	415	585	41.54
OS10G40600	Oryza sativa	7e-135	413	566	43.29
OS01G65110	Oryza sativa	9e-135	411	573	37.87
ATR_00067G01530	Amborella trichopoda	5e-133	404	463	43.20
AT1G69870	Arabidopsis thaliana	2e-131	405	561	38.50
RCC4223.05g02060	Picochlorum_RCC4223	3e-131	407	575	41.22
ATR_00019G00590	Amborella trichopoda	7e-130	398	548	40.15
ATR_00169G00300	Amborella trichopoda	9e-129	395	548	39.96
PP00072G00360	Physcomitrella patens	7e-128	397	576	37.50
AT1G72130	Arabidopsis thaliana	8e-128	393	564	38.12
AT3G21670	Arabidopsis thaliana	4e-127	393	568	41.20
AT1G22550	Arabidopsis thaliana	5e-127	392	562	38.97
ATR_00002G04300	Amborella trichopoda	2e-126	390	559	38.46
OS03G01290	Oryza sativa	3e-126	390	563	41.03
AT1G72120	Arabidopsis thaliana	4e-126	389	566	38.52
AT1G72125	Arabidopsis thaliana	5e-126	389	566	38.34
AT1G22570	Arabidopsis thaliana	3e-125	387	574	39.20
OS12G44110	Oryza sativa	7e-125	387	566	38.87
OS12G44100	Oryza sativa	4e-124	385	550	38.91
OS10G42900	Oryza sativa	2e-123	383	541	40.11
ATR_00088G00540	Amborella trichopoda	5e-123	379	474	43.88
OS01G68510	Oryza sativa	1e-122	381	555	37.12
OS06G49240	Oryza sativa	1e-122	376	428	45.09
AT1G59740	Arabidopsis thaliana	2e-122	381	561	38.15
OS01G65100	Oryza sativa	5e-122	378	564	37.06
PP00143G00670	Physcomitrella patens	7e-122	385	596	37.58
ATR_00036G01380	Amborella trichopoda	2e-120	371	449	41.20
AT1G27080	Arabidopsis thaliana	5e-120	374	570	37.19
AT1G18880	Arabidopsis thaliana	1e-119	373	556	35.79
OS05G35650	Oryza sativa	1e-118	370	558	40.50
OS04G39030	Oryza sativa	2e-117	368	583	43.22
OS01G01360	Oryza sativa	3e-117	367	574	42.51
OS04G50930	Oryza sativa	1e-116	366	557	39.32
ATR_00099G01020	Amborella trichopoda	2e-114	360	589	36.16
AT1G69850	Arabidopsis thaliana	2e-114	359	588	35.37
ATR_00078G00550	Amborella trichopoda	4e-114	359	583	38.08
AT1G52190	Arabidopsis thaliana	1e-113	358	574	35.54
AT1G33440	Arabidopsis thaliana	2e-113	358	579	37.48
OS01G54515	Oryza sativa	2e-112	352	520	39.81
OS05G35594	Oryza sativa	3e-111	350	548	37.23
AT5G62680	Arabidopsis thaliana	1e-110	350	556	36.87
AT1G27040	Arabidopsis thaliana	2e-109	346	574	35.54
OS01G65210	Oryza sativa	1e-108	348	558	36.02
ATR_00109G00940	Amborella trichopoda	1e-108	344	554	35.02
AT3G16180	Arabidopsis thaliana	6e-108	343	586	34.81
ATR_00118G00290	Amborella trichopoda	5e-106	332	398	43.47
OS05G27010	Oryza sativa	3e-104	330	467	42.83
ATR_00055G01460	Amborella trichopoda	3e-103	328	535	36.26
AT3G47960	Arabidopsis thaliana	3e-102	329	553	33.27
ATR_00089G01050	Amborella trichopoda	7e-100	321	563	33.75
OS06G38294	Oryza sativa	2e-99	320	587	35.78
AT5G62730	Arabidopsis thaliana	3e-99	320	574	34.32
OS04G36040	Oryza sativa	1e-98	319	587	36.46
OS11G18044	Oryza sativa	1e-97	316	567	34.04
ATR_00045G01590	Amborella trichopoda	2e-97	313	471	38.43
OS01G67640	Oryza sativa	8e-97	314	281	59.79
AT5G28470	Arabidopsis thaliana	2e-96	312	547	31.99
OS11G17970	Oryza sativa	1e-94	308	579	34.02
OS04G56560	Oryza sativa	4e-92	303	603	31.51
OS11G23890	Oryza sativa	8e-91	300	576	31.94
AT1G69860	Arabidopsis thaliana	1e-90	296	546	34.98
OS11G12740	Oryza sativa	1e-90	298	585	35.90
AT5G14940	Arabidopsis thaliana	8e-90	294	571	30.12
AT3G45680	Arabidopsis thaliana	5e-89	292	576	28.82
AT3G45650	Arabidopsis thaliana	6e-89	292	579	29.02
OS01G65150	Oryza sativa	6e-88	289	556	34.89
AT3G45720	Arabidopsis thaliana	2e-87	288	545	31.01
AT3G45710	Arabidopsis thaliana	8e-87	286	566	28.80
OS06G13210	Oryza sativa	2e-86	285	560	34.82
AT3G45660	Arabidopsis thaliana	2e-86	285	565	28.85
OS04G41450	Oryza sativa	5e-86	284	561	33.69
OS01G55610	Oryza sativa	2e-85	284	556	34.71
OS04G41400	Oryza sativa	7e-85	282	568	32.39
AT3G25260	Arabidopsis thaliana	3e-84	278	557	31.24
AT3G45700	Arabidopsis thaliana	7e-84	278	554	29.60
OS01G55600	Oryza sativa	2e-83	278	556	33.81
OS01G65169	Oryza sativa	4e-83	276	558	35.13
AT3G01350	Arabidopsis thaliana	6e-82	274	576	29.34
OS12G12934	Oryza sativa	8e-82	274	570	34.74
AT3G25280	Arabidopsis thaliana	3e-81	271	546	32.05
OS05G27304	Oryza sativa	6e-80	269	564	35.64
OS06G13200	Oryza sativa	1e-79	266	556	32.91
AT3G45690	Arabidopsis thaliana	3e-75	254	561	27.63
ATR_00118G00320	Amborella trichopoda	1e-72	242	311	44.05
ATR_00024G00970	Amborella trichopoda	6e-70	231	271	46.49
ATR_00112G00370	Amborella trichopoda	3e-69	234	360	38.06
HE0000G42610	Helicosporidium sp.	2e-68	228	223	48.88
OS11G18110	Oryza sativa	2e-68	238	466	31.55
CNC64A_007G03700	Chlorella sp NC64A	8e-68	234	215	51.16
PP00147G00390	Physcomitrella patens	8e-68	228	214	50.93
ATR_00070G00600	Amborella trichopoda	2e-66	225	273	41.39
CR04G03930	Chlamydomonas reinhardtii	9e-66	234	267	47.19
phs97310	Phytophtora sojae	2e-63	224	569	28.82
OS08G41590	Oryza sativa	5e-62	216	432	32.64
phs319720	Phytophtora sojae	2e-61	221	590	28.98
OS01G65140	Oryza sativa	2e-60	210	254	43.31
Naga_100030g44	Nannochloropsis gaditana	6e-59	214	472	35.17
ATR_00118G00300	Amborella trichopoda	6e-59	203	259	41.70
ATR_00162G00100	Amborella trichopoda	5e-58	202	273	42.49
ENSG00000139370	Homo sapiens	1e-57	208	573	28.62
ATR_00002G04290	Amborella trichopoda	1e-57	202	343	35.86
OS05G34000	Oryza sativa	6e-54	199	319	37.62
ENSMUSG00000029416	Mus musculus	7e-54	198	579	28.32
phs89090	Phytophtora sojae	3e-53	197	580	28.28
PP00069G00140	Physcomitrella patens	3e-52	192	529	28.17
PP00009G01060	Physcomitrella patens	6e-52	192	498	29.12
OS04G41410	Oryza sativa	2e-51	189	461	28.20
OS01G65200	Oryza sativa	1e-50	184	362	35.36
OS04G59480	Oryza sativa	2e-50	187	249	38.15
DDB_G0272550	Dictyostelium discoideum	1e-49	185	481	28.07
phs42450	Phytophtora sojae	4e-47	179	568	27.46
OS01G65190	Oryza sativa	3e-46	177	230	39.13
ENSMUSG00000025557	Mus musculus	4e-45	174	407	28.50
HE0000G35580	Helicosporidium sp.	7e-45	165	248	43.95
ATR_00023G02340	Amborella trichopoda	4e-44	163	289	32.87
PP00004G00090	Physcomitrella patens	4e-43	161	287	35.89
PP00065G01500	Physcomitrella patens	9e-43	165	489	28.02
AT2G38100	Arabidopsis thaliana	2e-42	164	529	24.76
OS01G65120	Oryza sativa	2e-42	164	229	40.17
OS10G05780	Oryza sativa	7e-42	163	247	38.87
WBGene00003877	Caenorhabditis elegans	4e-41	163	408	28.19
ATR_00020G00660	Amborella trichopoda	7e-41	153	244	35.25
ENSMUSG00000022899	Mus musculus	1e-40	160	405	27.65
FC006G04490	Fragilariopsis cylindrus	1e-40	159	596	25.50
FBgn0028491	Drosophila melanogaster	4e-40	160	422	28.20
AA0005G00440	Aureococcus anophagefferens	1e-39	153	479	30.90
ATR_00070G00590	Amborella trichopoda	1e-39	150	234	39.32
ATR_00054G00250	Amborella trichopoda	3e-39	146	201	38.31
ATR_00023G02330	Amborella trichopoda	7e-39	149	276	33.70
phs07850	Phytophtora sojae	2e-38	152	567	26.98
AA0009G01620	Aureococcus anophagefferens	3e-38	151	529	26.09
FBgn0265575	Drosophila melanogaster	1e-37	152	384	28.65
ATR_00024G00960	Amborella trichopoda	1e-37	141	118	54.24
ENSG00000163406	Homo sapiens	2e-37	151	391	27.62
AT5G11570	Arabidopsis thaliana	4e-37	147	230	36.09
OS04G34640	Oryza sativa	6e-37	142	98	72.45
WBGene00003878	Caenorhabditis elegans	7e-36	146	407	28.75
ES0453G00050	Ectocarpus siliculosus	4e-33	136	291	34.02
WBGene00003876	Caenorhabditis elegans	1e-32	137	408	28.68
ATR_00162G00110	Amborella trichopoda	4e-32	126	149	43.62
DDB_G0272468	Dictyostelium discoideum	1e-31	134	483	24.64
DDB_G0267874	Dictyostelium discoideum	2e-31	133	513	24.17
SPBC13A2.04c	Schizosaccharomyces pombe	7e-31	131	526	26.62
OS05G27050	Oryza sativa	1e-30	120	121	42.15
ATR_00118G00280	Amborella trichopoda	1e-29	120	168	39.88
OS06G49230	Oryza sativa	5e-29	117	96	52.08
phs255230	Phytophtora sojae	2e-26	117	593	22.43
phs42430	Phytophtora sojae	8e-26	114	445	27.64
YKR093W	Saccharomyces cerevisiae strain S288C	1e-25	115	500	24.80
phs07890	Phytophtora sojae	1e-25	108	171	37.43
ENSG00000188991	Homo sapiens	2e-25	114	555	22.52
PTI_12G03880	Phaeodactylum tricornutum	8e-25	113	405	23.95
TP04G00530	Thalassiosira pseudonana	4e-24	111	572	25.17
ATR_00067G01540	Amborella trichopoda	5e-23	101	188	31.91
OS08G31960	Oryza sativa	1e-22	102	65	80.00
OS03G17770	Oryza sativa	3e-22	102	137	45.26
emh586030	Emiliania huxleyi	1e-21	101	399	27.32
FC011G01070	Fragilariopsis cylindrus	3e-21	101	552	22.64
ATR_00020G00670	Amborella trichopoda	9e-21	94.7	134	42.54
gsu136190	Galdieria sulphuraria	3e-20	97.4	155	39.35
FC015G01430	Fragilariopsis cylindrus	4e-20	97.8	550	24.36
FC056G00710	Fragilariopsis cylindrus	8e-20	97.4	541	22.18
ATR_00109G00960	Amborella trichopoda	3e-19	90.5	125	36.00
phs31460	Phytophtora sojae	3e-19	95.5	611	22.59
ATR_00096G00160	Amborella trichopoda	1e-18	89.7	83	53.01
OS12G13790	Oryza sativa	2e-18	92.4	189	36.51
emh44980	Emiliania huxleyi	5e-17	87.0	124	40.32
ATR_00088G00530	Amborella trichopoda	5e-17	82.4	110	36.36
OS07G21960	Oryza sativa	6e-17	85.9	279	31.90
phs239650	Phytophtora sojae	9e-14	75.9	249	25.30
FC009G05560	Fragilariopsis cylindrus	6e-13	75.5	243	29.63
ATR_00089G01060	Amborella trichopoda	7e-13	70.9	77	42.86
phs31400	Phytophtora sojae	2e-12	73.9	522	22.80
ATR_00162G00120	Amborella trichopoda	4e-12	68.9	90	42.22
OS08G41600	Oryza sativa	5e-12	68.2	82	41.46
PTI_12G02910	Phaeodactylum tricornutum	2e-11	71.2	260	26.15
RCC4223.111g00230	Picochlorum_RCC4223	2e-11	70.9	236	26.27
OS02G52060	Oryza sativa	2e-10	66.2	111	34.23
ATR_00048G01070	Amborella trichopoda	4e-10	62.4	71	42.25
ES0051G00510	Ectocarpus siliculosus	4e-10	63.2	61	45.90
TP08G01040	Thalassiosira pseudonana	4e-10	66.6	222	28.38
emh670440	Emiliania huxleyi	2e-09	62.8	162	30.25
FBgn0037730	Drosophila melanogaster	5e-09	63.2	147	31.29
OT_11G01550	Ostreococcus tauri	5e-09	62.8	473	21.35
ORCC809_11G02490	Ostreococcus sp RCC809	1e-08	61.6	463	22.89
ATR_00023G02360	Amborella trichopoda	2e-08	58.2	84	35.71
BPRRCC1105_13G01850	Bathycoccus prasinos	1e-07	58.5	198	27.27
MRCC299_12G04110	Micromonas sp RCC299	6e-07	56.2	226	26.99
OS10G02230	Oryza sativa	9e-07	54.3	44	54.55
OS02G31980	Oryza sativa	2e-06	51.6	78	34.62
OS01G28980	Oryza sativa	2e-06	51.6	68	41.18
OS01G65130	Oryza sativa	8e-06	49.7	93	31.18

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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