Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: FBgn0010213

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'FBgn0010213' => array(
			'gene_id' => 'FBgn0010213',
			'e_value' => '7e-162',
			'bit_score' => '453',
			'alignment_length' => '218',
			'identity_percentage' => '100.00',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004931' => array(
			'gene_id' => 'WBGene00004931',
			'e_value' => '5e-94',
			'bit_score' => '281',
			'alignment_length' => '205',
			'identity_percentage' => '63.90',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000006818' => array(
			'gene_id' => 'ENSMUSG00000006818',
			'e_value' => '3e-92',
			'bit_score' => '276',
			'alignment_length' => '214',
			'identity_percentage' => '59.81',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000112096' => array(
			'gene_id' => 'ENSG00000112096',
			'e_value' => '4e-92',
			'bit_score' => '276',
			'alignment_length' => '203',
			'identity_percentage' => '62.07',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0011G02290' => array(
			'gene_id' => 'AA0011G02290',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '216',
			'identity_percentage' => '56.02',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004932' => array(
			'gene_id' => 'WBGene00004932',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '214',
			'identity_percentage' => '60.75',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR13G07570' => array(
			'gene_id' => 'CR13G07570',
			'e_value' => '4e-85',
			'bit_score' => '258',
			'alignment_length' => '196',
			'identity_percentage' => '62.24',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP05G03430' => array(
			'gene_id' => 'TP05G03430',
			'e_value' => '6e-85',
			'bit_score' => '259',
			'alignment_length' => '200',
			'identity_percentage' => '57.50',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G133110' => array(
			'gene_id' => 'VC00G133110',
			'e_value' => '1e-83',
			'bit_score' => '255',
			'alignment_length' => '196',
			'identity_percentage' => '60.20',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G17260' => array(
			'gene_id' => 'PI00G17260',
			'e_value' => '8e-81',
			'bit_score' => '248',
			'alignment_length' => '199',
			'identity_percentage' => '57.29',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.13g02410' => array(
			'gene_id' => 'RCC4223.13g02410',
			'e_value' => '2e-80',
			'bit_score' => '247',
			'alignment_length' => '203',
			'identity_percentage' => '56.16',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_01G05850' => array(
			'gene_id' => 'PTI_01G05850',
			'e_value' => '7e-80',
			'bit_score' => '245',
			'alignment_length' => '196',
			'identity_percentage' => '56.63',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0002G00340' => array(
			'gene_id' => 'ES0002G00340',
			'e_value' => '4e-79',
			'bit_score' => '243',
			'alignment_length' => '197',
			'identity_percentage' => '54.31',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs144800' => array(
			'gene_id' => 'phs144800',
			'e_value' => '4e-79',
			'bit_score' => '242',
			'alignment_length' => '198',
			'identity_percentage' => '56.57',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP04G02430' => array(
			'gene_id' => 'MP04G02430',
			'e_value' => '8e-79',
			'bit_score' => '243',
			'alignment_length' => '213',
			'identity_percentage' => '53.52',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_04G03810' => array(
			'gene_id' => 'ORCC809_04G03810',
			'e_value' => '2e-77',
			'bit_score' => '238',
			'alignment_length' => '194',
			'identity_percentage' => '54.64',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G04240' => array(
			'gene_id' => 'CV00G04240',
			'e_value' => '5e-76',
			'bit_score' => '234',
			'alignment_length' => '203',
			'identity_percentage' => '53.20',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_08G02540' => array(
			'gene_id' => 'MRCC299_08G02540',
			'e_value' => '5e-76',
			'bit_score' => '235',
			'alignment_length' => '195',
			'identity_percentage' => '54.87',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0271106' => array(
			'gene_id' => 'DDB_G0271106',
			'e_value' => '7e-76',
			'bit_score' => '235',
			'alignment_length' => '200',
			'identity_percentage' => '54.00',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G20920' => array(
			'gene_id' => 'HE0000G20920',
			'e_value' => '7e-76',
			'bit_score' => '236',
			'alignment_length' => '188',
			'identity_percentage' => '56.91',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_18G00290' => array(
			'gene_id' => 'BPRRCC1105_18G00290',
			'e_value' => '3e-75',
			'bit_score' => '239',
			'alignment_length' => '190',
			'identity_percentage' => '56.32',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_02G01500' => array(
			'gene_id' => 'OM_02G01500',
			'e_value' => '8e-75',
			'bit_score' => '233',
			'alignment_length' => '214',
			'identity_percentage' => '51.40',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_004G02130' => array(
			'gene_id' => 'CNC64A_004G02130',
			'e_value' => '4e-73',
			'bit_score' => '227',
			'alignment_length' => '200',
			'identity_percentage' => '52.50',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu127160' => array(
			'gene_id' => 'gsu127160',
			'e_value' => '4e-73',
			'bit_score' => '228',
			'alignment_length' => '215',
			'identity_percentage' => '50.23',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL04G01390' => array(
			'gene_id' => 'OL04G01390',
			'e_value' => '2e-72',
			'bit_score' => '226',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50430' => array(
			'gene_id' => 'AP00G50430',
			'e_value' => '4e-72',
			'bit_score' => '226',
			'alignment_length' => '218',
			'identity_percentage' => '49.08',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_04G01400' => array(
			'gene_id' => 'OT_04G01400',
			'e_value' => '1e-71',
			'bit_score' => '224',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00174G00210' => array(
			'gene_id' => 'PP00174G00210',
			'e_value' => '2e-70',
			'bit_score' => '221',
			'alignment_length' => '214',
			'identity_percentage' => '50.47',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G10920' => array(
			'gene_id' => 'AT3G10920',
			'e_value' => '3e-70',
			'bit_score' => '221',
			'alignment_length' => '206',
			'identity_percentage' => '51.46',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G40000' => array(
			'gene_id' => 'AC00G40000',
			'e_value' => '1e-68',
			'bit_score' => '216',
			'alignment_length' => '220',
			'identity_percentage' => '46.82',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50420' => array(
			'gene_id' => 'AP00G50420',
			'e_value' => '4e-66',
			'bit_score' => '211',
			'alignment_length' => '210',
			'identity_percentage' => '47.14',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS05G25850' => array(
			'gene_id' => 'OS05G25850',
			'e_value' => '1e-64',
			'bit_score' => '206',
			'alignment_length' => '188',
			'identity_percentage' => '52.66',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1486.01' => array(
			'gene_id' => 'SPAC1486.01',
			'e_value' => '5e-60',
			'bit_score' => '194',
			'alignment_length' => '201',
			'identity_percentage' => '49.25',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G56350' => array(
			'gene_id' => 'AT3G56350',
			'e_value' => '4e-59',
			'bit_score' => '192',
			'alignment_length' => '213',
			'identity_percentage' => '44.60',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM18G01580' => array(
			'gene_id' => 'CM18G01580',
			'e_value' => '2e-58',
			'bit_score' => '191',
			'alignment_length' => '198',
			'identity_percentage' => '48.99',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte226360' => array(
			'gene_id' => 'pte226360',
			'e_value' => '2e-57',
			'bit_score' => '187',
			'alignment_length' => '197',
			'identity_percentage' => '45.18',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00077G00260' => array(
			'gene_id' => 'ATR_00077G00260',
			'e_value' => '2e-56',
			'bit_score' => '184',
			'alignment_length' => '170',
			'identity_percentage' => '52.94',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G35570' => array(
			'gene_id' => 'CV00G35570',
			'e_value' => '3e-55',
			'bit_score' => '182',
			'alignment_length' => '208',
			'identity_percentage' => '45.19',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G81010' => array(
			'gene_id' => 'VC00G81010',
			'e_value' => '3e-53',
			'bit_score' => '177',
			'alignment_length' => '209',
			'identity_percentage' => '42.58',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu78240' => array(
			'gene_id' => 'gsu78240',
			'e_value' => '7e-53',
			'bit_score' => '176',
			'alignment_length' => '213',
			'identity_percentage' => '42.72',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G06330' => array(
			'gene_id' => 'CR02G06330',
			'e_value' => '1e-52',
			'bit_score' => '175',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YHR008C' => array(
			'gene_id' => 'YHR008C',
			'e_value' => '3e-52',
			'bit_score' => '174',
			'alignment_length' => '219',
			'identity_percentage' => '42.47',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G08770' => array(
			'gene_id' => 'FC006G08770',
			'e_value' => '6e-52',
			'bit_score' => '173',
			'alignment_length' => '213',
			'identity_percentage' => '43.66',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP03G03480' => array(
			'gene_id' => 'TP03G03480',
			'e_value' => '2e-50',
			'bit_score' => '170',
			'alignment_length' => '212',
			'identity_percentage' => '41.98',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G41340' => array(
			'gene_id' => 'AC00G41340',
			'e_value' => '5e-50',
			'bit_score' => '168',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_09G03520' => array(
			'gene_id' => 'PTI_09G03520',
			'e_value' => '8e-49',
			'bit_score' => '167',
			'alignment_length' => '227',
			'identity_percentage' => '38.33',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0091G00170' => array(
			'gene_id' => 'ES0091G00170',
			'e_value' => '1e-48',
			'bit_score' => '167',
			'alignment_length' => '200',
			'identity_percentage' => '43.50',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh315300' => array(
			'gene_id' => 'emh315300',
			'e_value' => '3e-48',
			'bit_score' => '165',
			'alignment_length' => '200',
			'identity_percentage' => '43.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM14G00230' => array(
			'gene_id' => 'CM14G00230',
			'e_value' => '5e-48',
			'bit_score' => '163',
			'alignment_length' => '210',
			'identity_percentage' => '42.86',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G38930' => array(
			'gene_id' => 'PI00G38930',
			'e_value' => '6e-47',
			'bit_score' => '160',
			'alignment_length' => '210',
			'identity_percentage' => '41.43',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G04690' => array(
			'gene_id' => 'FC006G04690',
			'e_value' => '1e-46',
			'bit_score' => '160',
			'alignment_length' => '208',
			'identity_percentage' => '41.83',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01100' => array(
			'gene_id' => 'CNC64A_003G01100',
			'e_value' => '3e-45',
			'bit_score' => '155',
			'alignment_length' => '207',
			'identity_percentage' => '40.58',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01480' => array(
			'gene_id' => 'RCC4223.10g01480',
			'e_value' => '6e-45',
			'bit_score' => '155',
			'alignment_length' => '210',
			'identity_percentage' => '40.95',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0013G02190' => array(
			'gene_id' => 'AA0013G02190',
			'e_value' => '2e-44',
			'bit_score' => '154',
			'alignment_length' => '203',
			'identity_percentage' => '44.33',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G39720' => array(
			'gene_id' => 'CV00G39720',
			'e_value' => '3e-44',
			'bit_score' => '154',
			'alignment_length' => '216',
			'identity_percentage' => '39.35',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr48440' => array(
			'gene_id' => 'ccr48440',
			'e_value' => '2e-42',
			'bit_score' => '151',
			'alignment_length' => '232',
			'identity_percentage' => '37.50',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.09g02580' => array(
			'gene_id' => 'RCC4223.09g02580',
			'e_value' => '1e-41',
			'bit_score' => '147',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr175720' => array(
			'gene_id' => 'ccr175720',
			'e_value' => '3e-41',
			'bit_score' => '145',
			'alignment_length' => '209',
			'identity_percentage' => '38.28',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G45530' => array(
			'gene_id' => 'PI00G45530',
			'e_value' => '7e-40',
			'bit_score' => '142',
			'alignment_length' => '207',
			'identity_percentage' => '37.68',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G40850' => array(
			'gene_id' => 'CV00G40850',
			'e_value' => '6e-38',
			'bit_score' => '138',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G29940' => array(
			'gene_id' => 'CV00G29940',
			'e_value' => '6e-38',
			'bit_score' => '136',
			'alignment_length' => '204',
			'identity_percentage' => '38.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0201G00270' => array(
			'gene_id' => 'ES0201G00270',
			'e_value' => '4e-37',
			'bit_score' => '134',
			'alignment_length' => '186',
			'identity_percentage' => '38.17',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60650' => array(
			'gene_id' => 'AC00G60650',
			'e_value' => '2e-36',
			'bit_score' => '134',
			'alignment_length' => '216',
			'identity_percentage' => '36.57',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM20G00280' => array(
			'gene_id' => 'CM20G00280',
			'e_value' => '4e-36',
			'bit_score' => '135',
			'alignment_length' => '205',
			'identity_percentage' => '40.98',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100558g2' => array(
			'gene_id' => 'Naga_100558g2',
			'e_value' => '4e-36',
			'bit_score' => '131',
			'alignment_length' => '196',
			'identity_percentage' => '37.76',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0421G00040' => array(
			'gene_id' => 'ES0421G00040',
			'e_value' => '7e-36',
			'bit_score' => '132',
			'alignment_length' => '189',
			'identity_percentage' => '39.15',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0219G00060' => array(
			'gene_id' => 'ES0219G00060',
			'e_value' => '1e-35',
			'bit_score' => '131',
			'alignment_length' => '188',
			'identity_percentage' => '38.30',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G88020' => array(
			'gene_id' => 'CV00G88020',
			'e_value' => '2e-34',
			'bit_score' => '130',
			'alignment_length' => '201',
			'identity_percentage' => '38.31',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G01760' => array(
			'gene_id' => 'CR12G01760',
			'e_value' => '3e-33',
			'bit_score' => '126',
			'alignment_length' => '217',
			'identity_percentage' => '37.79',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR10G04050' => array(
			'gene_id' => 'CR10G04050',
			'e_value' => '8e-33',
			'bit_score' => '124',
			'alignment_length' => '220',
			'identity_percentage' => '34.09',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G37390' => array(
			'gene_id' => 'AP00G37390',
			'e_value' => '2e-32',
			'bit_score' => '121',
			'alignment_length' => '206',
			'identity_percentage' => '35.44',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_002G04590' => array(
			'gene_id' => 'CNC64A_002G04590',
			'e_value' => '3e-32',
			'bit_score' => '122',
			'alignment_length' => '210',
			'identity_percentage' => '36.19',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00002G02230' => array(
			'gene_id' => 'PP00002G02230',
			'e_value' => '4e-32',
			'bit_score' => '123',
			'alignment_length' => '214',
			'identity_percentage' => '36.92',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G57020' => array(
			'gene_id' => 'PI00G57020',
			'e_value' => '8e-31',
			'bit_score' => '117',
			'alignment_length' => '190',
			'identity_percentage' => '39.47',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00030' => array(
			'gene_id' => 'CNC64A_053G00030',
			'e_value' => '3e-30',
			'bit_score' => '113',
			'alignment_length' => '79',
			'identity_percentage' => '56.96',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60420' => array(
			'gene_id' => 'AC00G60420',
			'e_value' => '1e-29',
			'bit_score' => '115',
			'alignment_length' => '210',
			'identity_percentage' => '36.67',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100051g29' => array(
			'gene_id' => 'Naga_100051g29',
			'e_value' => '2e-29',
			'bit_score' => '115',
			'alignment_length' => '203',
			'identity_percentage' => '33.50',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11410' => array(
			'gene_id' => 'AC00G11410',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11400' => array(
			'gene_id' => 'AC00G11400',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105360' => array(
			'gene_id' => 'VC00G105360',
			'e_value' => '7e-29',
			'bit_score' => '114',
			'alignment_length' => '221',
			'identity_percentage' => '34.39',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G23690' => array(
			'gene_id' => 'VC00G23690',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '248',
			'identity_percentage' => '31.45',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR17G01600' => array(
			'gene_id' => 'CR17G01600',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '215',
			'identity_percentage' => '36.28',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105340' => array(
			'gene_id' => 'VC00G105340',
			'e_value' => '6e-28',
			'bit_score' => '111',
			'alignment_length' => '190',
			'identity_percentage' => '35.26',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G00620' => array(
			'gene_id' => 'TP07G00620',
			'e_value' => '1e-27',
			'bit_score' => '110',
			'alignment_length' => '194',
			'identity_percentage' => '34.54',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00044G00090' => array(
			'gene_id' => 'ATR_00044G00090',
			'e_value' => '2e-27',
			'bit_score' => '110',
			'alignment_length' => '219',
			'identity_percentage' => '32.88',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105370' => array(
			'gene_id' => 'VC00G105370',
			'e_value' => '6e-27',
			'bit_score' => '108',
			'alignment_length' => '216',
			'identity_percentage' => '32.41',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G05110' => array(
			'gene_id' => 'OS06G05110',
			'e_value' => '2e-26',
			'bit_score' => '107',
			'alignment_length' => '216',
			'identity_percentage' => '31.94',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G25100' => array(
			'gene_id' => 'AT4G25100',
			'e_value' => '8e-26',
			'bit_score' => '105',
			'alignment_length' => '216',
			'identity_percentage' => '33.33',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR16G10150' => array(
			'gene_id' => 'CR16G10150',
			'e_value' => '1e-25',
			'bit_score' => '105',
			'alignment_length' => '232',
			'identity_percentage' => '31.47',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G51100' => array(
			'gene_id' => 'AT5G51100',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '216',
			'identity_percentage' => '31.02',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G117070' => array(
			'gene_id' => 'VC00G117070',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '252',
			'identity_percentage' => '30.16',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01110' => array(
			'gene_id' => 'CNC64A_003G01110',
			'e_value' => '3e-24',
			'bit_score' => '100',
			'alignment_length' => '204',
			'identity_percentage' => '33.82',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte87360' => array(
			'gene_id' => 'pte87360',
			'e_value' => '1e-23',
			'bit_score' => '99.0',
			'alignment_length' => '190',
			'identity_percentage' => '34.74',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00022G01800' => array(
			'gene_id' => 'PP00022G01800',
			'e_value' => '2e-23',
			'bit_score' => '99.4',
			'alignment_length' => '209',
			'identity_percentage' => '34.45',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G23310' => array(
			'gene_id' => 'AT5G23310',
			'e_value' => '2e-23',
			'bit_score' => '99.8',
			'alignment_length' => '212',
			'identity_percentage' => '30.66',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07700' => array(
			'gene_id' => 'AP00G07700',
			'e_value' => '4e-23',
			'bit_score' => '95.9',
			'alignment_length' => '119',
			'identity_percentage' => '42.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G00850' => array(
			'gene_id' => 'ATR_00002G00850',
			'e_value' => '8e-23',
			'bit_score' => '97.8',
			'alignment_length' => '233',
			'identity_percentage' => '32.62',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte256500' => array(
			'gene_id' => 'pte256500',
			'e_value' => '1e-19',
			'bit_score' => '87.0',
			'alignment_length' => '143',
			'identity_percentage' => '37.06',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh596200' => array(
			'gene_id' => 'emh596200',
			'e_value' => '2e-19',
			'bit_score' => '85.5',
			'alignment_length' => '97',
			'identity_percentage' => '38.14',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G02500' => array(
			'gene_id' => 'OS06G02500',
			'e_value' => '2e-15',
			'bit_score' => '77.8',
			'alignment_length' => '213',
			'identity_percentage' => '28.17',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07690' => array(
			'gene_id' => 'AP00G07690',
			'e_value' => '5e-15',
			'bit_score' => '72.4',
			'alignment_length' => '86',
			'identity_percentage' => '43.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G44530' => array(
			'gene_id' => 'HE0000G44530',
			'e_value' => '2e-14',
			'bit_score' => '69.7',
			'alignment_length' => '56',
			'identity_percentage' => '57.14',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00010' => array(
			'gene_id' => 'CNC64A_053G00010',
			'e_value' => '2e-13',
			'bit_score' => '67.4',
			'alignment_length' => '53',
			'identity_percentage' => '58.49',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC3H7.04' => array(
			'gene_id' => 'SPBC3H7.04',
			'e_value' => '3e-10',
			'bit_score' => '61.2',
			'alignment_length' => '141',
			'identity_percentage' => '26.24',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'drm' => array(
			(int) 0 => 'FBgn0010213'
		),
		'cel' => array(
			(int) 0 => 'WBGene00004931',
			(int) 1 => 'WBGene00004932'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000006818'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000112096'
		),
		'aan' => array(
			(int) 0 => 'AA0011G02290',
			(int) 1 => 'AA0013G02190'
		),
		'cre' => array(
			(int) 0 => 'CR13G07570',
			(int) 1 => 'CR02G06330',
			(int) 2 => 'CR12G01760',
			(int) 3 => 'CR10G04050',
			(int) 4 => 'CR17G01600',
			(int) 5 => 'CR16G10150'
		),
		'tps' => array(
			(int) 0 => 'TP05G03430',
			(int) 1 => 'TP03G03480',
			(int) 2 => 'TP07G00620'
		),
		'vca' => array(
			(int) 0 => 'VC00G133110',
			(int) 1 => 'VC00G81010',
			(int) 2 => 'VC00G105360',
			(int) 3 => 'VC00G23690',
			(int) 4 => 'VC00G105340',
			(int) 5 => 'VC00G105370',
			(int) 6 => 'VC00G117070'
		),
		'pse3' => array(
			(int) 0 => 'PI00G17260',
			(int) 1 => 'PI00G38930',
			(int) 2 => 'PI00G45530',
			(int) 3 => 'PI00G57020'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.13g02410',
			(int) 1 => 'RCC4223.10g01480',
			(int) 2 => 'RCC4223.09g02580'
		),
		'ptri' => array(
			(int) 0 => 'PTI_01G05850',
			(int) 1 => 'PTI_09G03520'
		),
		'esi' => array(
			(int) 0 => 'ES0002G00340',
			(int) 1 => 'ES0091G00170',
			(int) 2 => 'ES0201G00270',
			(int) 3 => 'ES0421G00040',
			(int) 4 => 'ES0219G00060'
		),
		'phs' => array(
			(int) 0 => 'phs144800'
		),
		'mpu' => array(
			(int) 0 => 'MP04G02430'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_04G03810'
		),
		'cvu' => array(
			(int) 0 => 'CV00G04240',
			(int) 1 => 'CV00G35570',
			(int) 2 => 'CV00G39720',
			(int) 3 => 'CV00G40850',
			(int) 4 => 'CV00G29940',
			(int) 5 => 'CV00G88020'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_08G02540'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0271106'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G20920',
			(int) 1 => 'HE0000G44530'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_18G00290'
		),
		'ome' => array(
			(int) 0 => 'OM_02G01500'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_004G02130',
			(int) 1 => 'CNC64A_003G01100',
			(int) 2 => 'CNC64A_002G04590',
			(int) 3 => 'CNC64A_003G01110'
		),
		'gsu' => array(
			(int) 0 => 'gsu127160',
			(int) 1 => 'gsu78240'
		),
		'olu' => array(
			(int) 0 => 'OL04G01390'
		),
		'apr' => array(
			(int) 0 => 'AP00G50430',
			(int) 1 => 'AP00G50420',
			(int) 2 => 'AP00G37390',
			(int) 3 => 'AP00G07700',
			(int) 4 => 'AP00G07690'
		),
		'ota' => array(
			(int) 0 => 'OT_04G01400'
		),
		'ppa' => array(
			(int) 0 => 'PP00174G00210',
			(int) 1 => 'PP00002G02230',
			(int) 2 => 'PP00022G01800'
		),
		'ath' => array(
			(int) 0 => 'AT3G10920',
			(int) 1 => 'AT3G56350',
			(int) 2 => 'AT4G25100',
			(int) 3 => 'AT5G51100',
			(int) 4 => 'AT5G23310'
		),
		'acg' => array(
			(int) 0 => 'AC00G40000',
			(int) 1 => 'AC00G41340',
			(int) 2 => 'AC00G60650',
			(int) 3 => 'AC00G60420',
			(int) 4 => 'AC00G11410',
			(int) 5 => 'AC00G11400'
		),
		'osa' => array(
			(int) 0 => 'OS05G25850',
			(int) 1 => 'OS06G05110',
			(int) 2 => 'OS06G02500'
		),
		'scp' => array(
			(int) 0 => 'SPAC1486.01',
			(int) 1 => 'SPBC3H7.04'
		),
		'cme' => array(
			(int) 0 => 'CM18G01580',
			(int) 1 => 'CM14G00230',
			(int) 2 => 'CM20G00280'
		),
		'pte' => array(
			(int) 0 => 'pte226360',
			(int) 1 => 'pte87360',
			(int) 2 => 'pte256500'
		),
		'atr' => array(
			(int) 0 => 'ATR_00077G00260',
			(int) 1 => 'ATR_00044G00090',
			(int) 2 => 'ATR_00002G00850'
		),
		'sac' => array(
			(int) 0 => 'YHR008C'
		),
		'fcy' => array(
			(int) 0 => 'FC006G08770',
			(int) 1 => 'FC006G04690'
		),
		'emh' => array(
			(int) 0 => 'emh315300',
			(int) 1 => 'emh596200'
		),
		'ccr' => array(
			(int) 0 => 'ccr48440',
			(int) 1 => 'ccr175720'
		),
		'nga' => array(
			(int) 0 => 'Naga_100558g2',
			(int) 1 => 'Naga_100051g29'
		)
	),
	'gene_id' => 'FBgn0010213',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'FBgn0010213',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'AP00G16600',
	'gf_placeholder' => 'HOM03P014805',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'FBgn0010213' => array(
		'gene_id' => 'FBgn0010213',
		'e_value' => '7e-162',
		'bit_score' => '453',
		'alignment_length' => '218',
		'identity_percentage' => '100.00',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004931' => array(
		'gene_id' => 'WBGene00004931',
		'e_value' => '5e-94',
		'bit_score' => '281',
		'alignment_length' => '205',
		'identity_percentage' => '63.90',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSMUSG00000006818' => array(
		'gene_id' => 'ENSMUSG00000006818',
		'e_value' => '3e-92',
		'bit_score' => '276',
		'alignment_length' => '214',
		'identity_percentage' => '59.81',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSG00000112096' => array(
		'gene_id' => 'ENSG00000112096',
		'e_value' => '4e-92',
		'bit_score' => '276',
		'alignment_length' => '203',
		'identity_percentage' => '62.07',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AA0011G02290' => array(
		'gene_id' => 'AA0011G02290',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '216',
		'identity_percentage' => '56.02',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004932' => array(
		'gene_id' => 'WBGene00004932',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '214',
		'identity_percentage' => '60.75',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CR13G07570' => array(
		'gene_id' => 'CR13G07570',
		'e_value' => '4e-85',
		'bit_score' => '258',
		'alignment_length' => '196',
		'identity_percentage' => '62.24',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP05G03430' => array(
		'gene_id' => 'TP05G03430',
		'e_value' => '6e-85',
		'bit_score' => '259',
		'alignment_length' => '200',
		'identity_percentage' => '57.50',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'VC00G133110' => array(
		'gene_id' => 'VC00G133110',
		'e_value' => '1e-83',
		'bit_score' => '255',
		'alignment_length' => '196',
		'identity_percentage' => '60.20',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PI00G17260' => array(
		'gene_id' => 'PI00G17260',
		'e_value' => '8e-81',
		'bit_score' => '248',
		'alignment_length' => '199',
		'identity_percentage' => '57.29',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.13g02410' => array(
		'gene_id' => 'RCC4223.13g02410',
		'e_value' => '2e-80',
		'bit_score' => '247',
		'alignment_length' => '203',
		'identity_percentage' => '56.16',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PTI_01G05850' => array(
		'gene_id' => 'PTI_01G05850',
		'e_value' => '7e-80',
		'bit_score' => '245',
		'alignment_length' => '196',
		'identity_percentage' => '56.63',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ES0002G00340' => array(
		'gene_id' => 'ES0002G00340',
		'e_value' => '4e-79',
		'bit_score' => '243',
		'alignment_length' => '197',
		'identity_percentage' => '54.31',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'phs144800' => array(
		'gene_id' => 'phs144800',
		'e_value' => '4e-79',
		'bit_score' => '242',
		'alignment_length' => '198',
		'identity_percentage' => '56.57',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MP04G02430' => array(
		'gene_id' => 'MP04G02430',
		'e_value' => '8e-79',
		'bit_score' => '243',
		'alignment_length' => '213',
		'identity_percentage' => '53.52',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ORCC809_04G03810' => array(
		'gene_id' => 'ORCC809_04G03810',
		'e_value' => '2e-77',
		'bit_score' => '238',
		'alignment_length' => '194',
		'identity_percentage' => '54.64',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G04240' => array(
		'gene_id' => 'CV00G04240',
		'e_value' => '5e-76',
		'bit_score' => '234',
		'alignment_length' => '203',
		'identity_percentage' => '53.20',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MRCC299_08G02540' => array(
		'gene_id' => 'MRCC299_08G02540',
		'e_value' => '5e-76',
		'bit_score' => '235',
		'alignment_length' => '195',
		'identity_percentage' => '54.87',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'DDB_G0271106' => array(
		'gene_id' => 'DDB_G0271106',
		'e_value' => '7e-76',
		'bit_score' => '235',
		'alignment_length' => '200',
		'identity_percentage' => '54.00',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'HE0000G20920' => array(
		'gene_id' => 'HE0000G20920',
		'e_value' => '7e-76',
		'bit_score' => '236',
		'alignment_length' => '188',
		'identity_percentage' => '56.91',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'BPRRCC1105_18G00290' => array(
		'gene_id' => 'BPRRCC1105_18G00290',
		'e_value' => '3e-75',
		'bit_score' => '239',
		'alignment_length' => '190',
		'identity_percentage' => '56.32',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OM_02G01500' => array(
		'gene_id' => 'OM_02G01500',
		'e_value' => '8e-75',
		'bit_score' => '233',
		'alignment_length' => '214',
		'identity_percentage' => '51.40',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CNC64A_004G02130' => array(
		'gene_id' => 'CNC64A_004G02130',
		'e_value' => '4e-73',
		'bit_score' => '227',
		'alignment_length' => '200',
		'identity_percentage' => '52.50',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'gsu127160' => array(
		'gene_id' => 'gsu127160',
		'e_value' => '4e-73',
		'bit_score' => '228',
		'alignment_length' => '215',
		'identity_percentage' => '50.23',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OL04G01390' => array(
		'gene_id' => 'OL04G01390',
		'e_value' => '2e-72',
		'bit_score' => '226',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50430' => array(
		'gene_id' => 'AP00G50430',
		'e_value' => '4e-72',
		'bit_score' => '226',
		'alignment_length' => '218',
		'identity_percentage' => '49.08',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OT_04G01400' => array(
		'gene_id' => 'OT_04G01400',
		'e_value' => '1e-71',
		'bit_score' => '224',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PP00174G00210' => array(
		'gene_id' => 'PP00174G00210',
		'e_value' => '2e-70',
		'bit_score' => '221',
		'alignment_length' => '214',
		'identity_percentage' => '50.47',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G10920' => array(
		'gene_id' => 'AT3G10920',
		'e_value' => '3e-70',
		'bit_score' => '221',
		'alignment_length' => '206',
		'identity_percentage' => '51.46',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AC00G40000' => array(
		'gene_id' => 'AC00G40000',
		'e_value' => '1e-68',
		'bit_score' => '216',
		'alignment_length' => '220',
		'identity_percentage' => '46.82',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50420' => array(
		'gene_id' => 'AP00G50420',
		'e_value' => '4e-66',
		'bit_score' => '211',
		'alignment_length' => '210',
		'identity_percentage' => '47.14',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'OS05G25850' => array(
		'gene_id' => 'OS05G25850',
		'e_value' => '1e-64',
		'bit_score' => '206',
		'alignment_length' => '188',
		'identity_percentage' => '52.66',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'SPAC1486.01' => array(
		'gene_id' => 'SPAC1486.01',
		'e_value' => '5e-60',
		'bit_score' => '194',
		'alignment_length' => '201',
		'identity_percentage' => '49.25',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G56350' => array(
		'gene_id' => 'AT3G56350',
		'e_value' => '4e-59',
		'bit_score' => '192',
		'alignment_length' => '213',
		'identity_percentage' => '44.60',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P199736'
		)
	),
	'CM18G01580' => array(
		'gene_id' => 'CM18G01580',
		'e_value' => '2e-58',
		'bit_score' => '191',
		'alignment_length' => '198',
		'identity_percentage' => '48.99',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'pte226360' => array(
		'gene_id' => 'pte226360',
		'e_value' => '2e-57',
		'bit_score' => '187',
		'alignment_length' => '197',
		'identity_percentage' => '45.18',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ATR_00077G00260' => array(
		'gene_id' => 'ATR_00077G00260',
		'e_value' => '2e-56',
		'bit_score' => '184',
		'alignment_length' => '170',
		'identity_percentage' => '52.94',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G35570' => array(
		'gene_id' => 'CV00G35570',
		'e_value' => '3e-55',
		'bit_score' => '182',
		'alignment_length' => '208',
		'identity_percentage' => '45.19',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'VC00G81010' => array(
		'gene_id' => 'VC00G81010',
		'e_value' => '3e-53',
		'bit_score' => '177',
		'alignment_length' => '209',
		'identity_percentage' => '42.58',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'gsu78240' => array(
		'gene_id' => 'gsu78240',
		'e_value' => '7e-53',
		'bit_score' => '176',
		'alignment_length' => '213',
		'identity_percentage' => '42.72',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CR02G06330' => array(
		'gene_id' => 'CR02G06330',
		'e_value' => '1e-52',
		'bit_score' => '175',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'YHR008C' => array(
		'gene_id' => 'YHR008C',
		'e_value' => '3e-52',
		'bit_score' => '174',
		'alignment_length' => '219',
		'identity_percentage' => '42.47',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'FC006G08770' => array(
		'gene_id' => 'FC006G08770',
		'e_value' => '6e-52',
		'bit_score' => '173',
		'alignment_length' => '213',
		'identity_percentage' => '43.66',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP03G03480' => array(
		'gene_id' => 'TP03G03480',
		'e_value' => '2e-50',
		'bit_score' => '170',
		'alignment_length' => '212',
		'identity_percentage' => '41.98',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AC00G41340' => array(
		'gene_id' => 'AC00G41340',
		'e_value' => '5e-50',
		'bit_score' => '168',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PTI_09G03520' => array(
		'gene_id' => 'PTI_09G03520',
		'e_value' => '8e-49',
		'bit_score' => '167',
		'alignment_length' => '227',
		'identity_percentage' => '38.33',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0091G00170' => array(
		'gene_id' => 'ES0091G00170',
		'e_value' => '1e-48',
		'bit_score' => '167',
		'alignment_length' => '200',
		'identity_percentage' => '43.50',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'emh315300' => array(
		'gene_id' => 'emh315300',
		'e_value' => '3e-48',
		'bit_score' => '165',
		'alignment_length' => '200',
		'identity_percentage' => '43.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CM14G00230' => array(
		'gene_id' => 'CM14G00230',
		'e_value' => '5e-48',
		'bit_score' => '163',
		'alignment_length' => '210',
		'identity_percentage' => '42.86',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G38930' => array(
		'gene_id' => 'PI00G38930',
		'e_value' => '6e-47',
		'bit_score' => '160',
		'alignment_length' => '210',
		'identity_percentage' => '41.43',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'FC006G04690' => array(
		'gene_id' => 'FC006G04690',
		'e_value' => '1e-46',
		'bit_score' => '160',
		'alignment_length' => '208',
		'identity_percentage' => '41.83',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CNC64A_003G01100' => array(
		'gene_id' => 'CNC64A_003G01100',
		'e_value' => '3e-45',
		'bit_score' => '155',
		'alignment_length' => '207',
		'identity_percentage' => '40.58',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'RCC4223.10g01480' => array(
		'gene_id' => 'RCC4223.10g01480',
		'e_value' => '6e-45',
		'bit_score' => '155',
		'alignment_length' => '210',
		'identity_percentage' => '40.95',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AA0013G02190' => array(
		'gene_id' => 'AA0013G02190',
		'e_value' => '2e-44',
		'bit_score' => '154',
		'alignment_length' => '203',
		'identity_percentage' => '44.33',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CV00G39720' => array(
		'gene_id' => 'CV00G39720',
		'e_value' => '3e-44',
		'bit_score' => '154',
		'alignment_length' => '216',
		'identity_percentage' => '39.35',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092266'
		)
	),
	'ccr48440' => array(
		'gene_id' => 'ccr48440',
		'e_value' => '2e-42',
		'bit_score' => '151',
		'alignment_length' => '232',
		'identity_percentage' => '37.50',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.09g02580' => array(
		'gene_id' => 'RCC4223.09g02580',
		'e_value' => '1e-41',
		'bit_score' => '147',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ccr175720' => array(
		'gene_id' => 'ccr175720',
		'e_value' => '3e-41',
		'bit_score' => '145',
		'alignment_length' => '209',
		'identity_percentage' => '38.28',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G45530' => array(
		'gene_id' => 'PI00G45530',
		'e_value' => '7e-40',
		'bit_score' => '142',
		'alignment_length' => '207',
		'identity_percentage' => '37.68',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CV00G40850' => array(
		'gene_id' => 'CV00G40850',
		'e_value' => '6e-38',
		'bit_score' => '138',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092263'
		)
	),
	'CV00G29940' => array(
		'gene_id' => 'CV00G29940',
		'e_value' => '6e-38',
		'bit_score' => '136',
		'alignment_length' => '204',
		'identity_percentage' => '38.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ES0201G00270' => array(
		'gene_id' => 'ES0201G00270',
		'e_value' => '4e-37',
		'bit_score' => '134',
		'alignment_length' => '186',
		'identity_percentage' => '38.17',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G60650' => array(
		'gene_id' => 'AC00G60650',
		'e_value' => '2e-36',
		'bit_score' => '134',
		'alignment_length' => '216',
		'identity_percentage' => '36.57',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'CM20G00280' => array(
		'gene_id' => 'CM20G00280',
		'e_value' => '4e-36',
		'bit_score' => '135',
		'alignment_length' => '205',
		'identity_percentage' => '40.98',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P125267'
		)
	),
	'Naga_100558g2' => array(
		'gene_id' => 'Naga_100558g2',
		'e_value' => '4e-36',
		'bit_score' => '131',
		'alignment_length' => '196',
		'identity_percentage' => '37.76',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0421G00040' => array(
		'gene_id' => 'ES0421G00040',
		'e_value' => '7e-36',
		'bit_score' => '132',
		'alignment_length' => '189',
		'identity_percentage' => '39.15',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'ES0219G00060' => array(
		'gene_id' => 'ES0219G00060',
		'e_value' => '1e-35',
		'bit_score' => '131',
		'alignment_length' => '188',
		'identity_percentage' => '38.30',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'CV00G88020' => array(
		'gene_id' => 'CV00G88020',
		'e_value' => '2e-34',
		'bit_score' => '130',
		'alignment_length' => '201',
		'identity_percentage' => '38.31',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P104180'
		)
	),
	'CR12G01760' => array(
		'gene_id' => 'CR12G01760',
		'e_value' => '3e-33',
		'bit_score' => '126',
		'alignment_length' => '217',
		'identity_percentage' => '37.79',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CR10G04050' => array(
		'gene_id' => 'CR10G04050',
		'e_value' => '8e-33',
		'bit_score' => '124',
		'alignment_length' => '220',
		'identity_percentage' => '34.09',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G37390' => array(
		'gene_id' => 'AP00G37390',
		'e_value' => '2e-32',
		'bit_score' => '121',
		'alignment_length' => '206',
		'identity_percentage' => '35.44',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CNC64A_002G04590' => array(
		'gene_id' => 'CNC64A_002G04590',
		'e_value' => '3e-32',
		'bit_score' => '122',
		'alignment_length' => '210',
		'identity_percentage' => '36.19',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00002G02230' => array(
		'gene_id' => 'PP00002G02230',
		'e_value' => '4e-32',
		'bit_score' => '123',
		'alignment_length' => '214',
		'identity_percentage' => '36.92',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PI00G57020' => array(
		'gene_id' => 'PI00G57020',
		'e_value' => '8e-31',
		'bit_score' => '117',
		'alignment_length' => '190',
		'identity_percentage' => '39.47',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P095062'
		)
	),
	'CNC64A_053G00030' => array(
		'gene_id' => 'CNC64A_053G00030',
		'e_value' => '3e-30',
		'bit_score' => '113',
		'alignment_length' => '79',
		'identity_percentage' => '56.96',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P171617'
		)
	),
	'AC00G60420' => array(
		'gene_id' => 'AC00G60420',
		'e_value' => '1e-29',
		'bit_score' => '115',
		'alignment_length' => '210',
		'identity_percentage' => '36.67',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'Naga_100051g29' => array(
		'gene_id' => 'Naga_100051g29',
		'e_value' => '2e-29',
		'bit_score' => '115',
		'alignment_length' => '203',
		'identity_percentage' => '33.50',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11410' => array(
		'gene_id' => 'AC00G11410',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11400' => array(
		'gene_id' => 'AC00G11400',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105360' => array(
		'gene_id' => 'VC00G105360',
		'e_value' => '7e-29',
		'bit_score' => '114',
		'alignment_length' => '221',
		'identity_percentage' => '34.39',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P151582'
		)
	),
	'VC00G23690' => array(
		'gene_id' => 'VC00G23690',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '248',
		'identity_percentage' => '31.45',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'CR17G01600' => array(
		'gene_id' => 'CR17G01600',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '215',
		'identity_percentage' => '36.28',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P133541'
		)
	),
	'VC00G105340' => array(
		'gene_id' => 'VC00G105340',
		'e_value' => '6e-28',
		'bit_score' => '111',
		'alignment_length' => '190',
		'identity_percentage' => '35.26',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'TP07G00620' => array(
		'gene_id' => 'TP07G00620',
		'e_value' => '1e-27',
		'bit_score' => '110',
		'alignment_length' => '194',
		'identity_percentage' => '34.54',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ATR_00044G00090' => array(
		'gene_id' => 'ATR_00044G00090',
		'e_value' => '2e-27',
		'bit_score' => '110',
		'alignment_length' => '219',
		'identity_percentage' => '32.88',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105370' => array(
		'gene_id' => 'VC00G105370',
		'e_value' => '6e-27',
		'bit_score' => '108',
		'alignment_length' => '216',
		'identity_percentage' => '32.41',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P188832'
		)
	),
	'OS06G05110' => array(
		'gene_id' => 'OS06G05110',
		'e_value' => '2e-26',
		'bit_score' => '107',
		'alignment_length' => '216',
		'identity_percentage' => '31.94',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT4G25100' => array(
		'gene_id' => 'AT4G25100',
		'e_value' => '8e-26',
		'bit_score' => '105',
		'alignment_length' => '216',
		'identity_percentage' => '33.33',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CR16G10150' => array(
		'gene_id' => 'CR16G10150',
		'e_value' => '1e-25',
		'bit_score' => '105',
		'alignment_length' => '232',
		'identity_percentage' => '31.47',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'AT5G51100' => array(
		'gene_id' => 'AT5G51100',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '216',
		'identity_percentage' => '31.02',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G117070' => array(
		'gene_id' => 'VC00G117070',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '252',
		'identity_percentage' => '30.16',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CNC64A_003G01110' => array(
		'gene_id' => 'CNC64A_003G01110',
		'e_value' => '3e-24',
		'bit_score' => '100',
		'alignment_length' => '204',
		'identity_percentage' => '33.82',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P120410'
		)
	),
	'pte87360' => array(
		'gene_id' => 'pte87360',
		'e_value' => '1e-23',
		'bit_score' => '99.0',
		'alignment_length' => '190',
		'identity_percentage' => '34.74',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00022G01800' => array(
		'gene_id' => 'PP00022G01800',
		'e_value' => '2e-23',
		'bit_score' => '99.4',
		'alignment_length' => '209',
		'identity_percentage' => '34.45',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT5G23310' => array(
		'gene_id' => 'AT5G23310',
		'e_value' => '2e-23',
		'bit_score' => '99.8',
		'alignment_length' => '212',
		'identity_percentage' => '30.66',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07700' => array(
		'gene_id' => 'AP00G07700',
		'e_value' => '4e-23',
		'bit_score' => '95.9',
		'alignment_length' => '119',
		'identity_percentage' => '42.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ATR_00002G00850' => array(
		'gene_id' => 'ATR_00002G00850',
		'e_value' => '8e-23',
		'bit_score' => '97.8',
		'alignment_length' => '233',
		'identity_percentage' => '32.62',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'pte256500' => array(
		'gene_id' => 'pte256500',
		'e_value' => '1e-19',
		'bit_score' => '87.0',
		'alignment_length' => '143',
		'identity_percentage' => '37.06',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P111717'
		)
	),
	'emh596200' => array(
		'gene_id' => 'emh596200',
		'e_value' => '2e-19',
		'bit_score' => '85.5',
		'alignment_length' => '97',
		'identity_percentage' => '38.14',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P124956'
		)
	),
	'OS06G02500' => array(
		'gene_id' => 'OS06G02500',
		'e_value' => '2e-15',
		'bit_score' => '77.8',
		'alignment_length' => '213',
		'identity_percentage' => '28.17',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07690' => array(
		'gene_id' => 'AP00G07690',
		'e_value' => '5e-15',
		'bit_score' => '72.4',
		'alignment_length' => '86',
		'identity_percentage' => '43.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P162479'
		)
	),
	'HE0000G44530' => array(
		'gene_id' => 'HE0000G44530',
		'e_value' => '2e-14',
		'bit_score' => '69.7',
		'alignment_length' => '56',
		'identity_percentage' => '57.14',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P174303'
		)
	),
	'CNC64A_053G00010' => array(
		'gene_id' => 'CNC64A_053G00010',
		'e_value' => '2e-13',
		'bit_score' => '67.4',
		'alignment_length' => '53',
		'identity_percentage' => '58.49',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P190791'
		)
	),
	'SPBC3H7.04' => array(
		'gene_id' => 'SPBC3H7.04',
		'e_value' => '3e-10',
		'bit_score' => '61.2',
		'alignment_length' => '141',
		'identity_percentage' => '26.24',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P119626'
		)
	)
)
$similarity_hits_species = array(
	'drm' => array(
		(int) 0 => 'FBgn0010213'
	),
	'cel' => array(
		(int) 0 => 'WBGene00004931',
		(int) 1 => 'WBGene00004932'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000006818'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000112096'
	),
	'aan' => array(
		(int) 0 => 'AA0011G02290',
		(int) 1 => 'AA0013G02190'
	),
	'cre' => array(
		(int) 0 => 'CR13G07570',
		(int) 1 => 'CR02G06330',
		(int) 2 => 'CR12G01760',
		(int) 3 => 'CR10G04050',
		(int) 4 => 'CR17G01600',
		(int) 5 => 'CR16G10150'
	),
	'tps' => array(
		(int) 0 => 'TP05G03430',
		(int) 1 => 'TP03G03480',
		(int) 2 => 'TP07G00620'
	),
	'vca' => array(
		(int) 0 => 'VC00G133110',
		(int) 1 => 'VC00G81010',
		(int) 2 => 'VC00G105360',
		(int) 3 => 'VC00G23690',
		(int) 4 => 'VC00G105340',
		(int) 5 => 'VC00G105370',
		(int) 6 => 'VC00G117070'
	),
	'pse3' => array(
		(int) 0 => 'PI00G17260',
		(int) 1 => 'PI00G38930',
		(int) 2 => 'PI00G45530',
		(int) 3 => 'PI00G57020'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.13g02410',
		(int) 1 => 'RCC4223.10g01480',
		(int) 2 => 'RCC4223.09g02580'
	),
	'ptri' => array(
		(int) 0 => 'PTI_01G05850',
		(int) 1 => 'PTI_09G03520'
	),
	'esi' => array(
		(int) 0 => 'ES0002G00340',
		(int) 1 => 'ES0091G00170',
		(int) 2 => 'ES0201G00270',
		(int) 3 => 'ES0421G00040',
		(int) 4 => 'ES0219G00060'
	),
	'phs' => array(
		(int) 0 => 'phs144800'
	),
	'mpu' => array(
		(int) 0 => 'MP04G02430'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_04G03810'
	),
	'cvu' => array(
		(int) 0 => 'CV00G04240',
		(int) 1 => 'CV00G35570',
		(int) 2 => 'CV00G39720',
		(int) 3 => 'CV00G40850',
		(int) 4 => 'CV00G29940',
		(int) 5 => 'CV00G88020'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_08G02540'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0271106'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G20920',
		(int) 1 => 'HE0000G44530'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_18G00290'
	),
	'ome' => array(
		(int) 0 => 'OM_02G01500'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_004G02130',
		(int) 1 => 'CNC64A_003G01100',
		(int) 2 => 'CNC64A_002G04590',
		(int) 3 => 'CNC64A_003G01110'
	),
	'gsu' => array(
		(int) 0 => 'gsu127160',
		(int) 1 => 'gsu78240'
	),
	'olu' => array(
		(int) 0 => 'OL04G01390'
	),
	'apr' => array(
		(int) 0 => 'AP00G50430',
		(int) 1 => 'AP00G50420',
		(int) 2 => 'AP00G37390',
		(int) 3 => 'AP00G07700',
		(int) 4 => 'AP00G07690'
	),
	'ota' => array(
		(int) 0 => 'OT_04G01400'
	),
	'ppa' => array(
		(int) 0 => 'PP00174G00210',
		(int) 1 => 'PP00002G02230',
		(int) 2 => 'PP00022G01800'
	),
	'ath' => array(
		(int) 0 => 'AT3G10920',
		(int) 1 => 'AT3G56350',
		(int) 2 => 'AT4G25100',
		(int) 3 => 'AT5G51100',
		(int) 4 => 'AT5G23310'
	),
	'acg' => array(
		(int) 0 => 'AC00G40000',
		(int) 1 => 'AC00G41340',
		(int) 2 => 'AC00G60650',
		(int) 3 => 'AC00G60420',
		(int) 4 => 'AC00G11410',
		(int) 5 => 'AC00G11400'
	),
	'osa' => array(
		(int) 0 => 'OS05G25850',
		(int) 1 => 'OS06G05110',
		(int) 2 => 'OS06G02500'
	),
	'scp' => array(
		(int) 0 => 'SPAC1486.01',
		(int) 1 => 'SPBC3H7.04'
	),
	'cme' => array(
		(int) 0 => 'CM18G01580',
		(int) 1 => 'CM14G00230',
		(int) 2 => 'CM20G00280'
	),
	'pte' => array(
		(int) 0 => 'pte226360',
		(int) 1 => 'pte87360',
		(int) 2 => 'pte256500'
	),
	'atr' => array(
		(int) 0 => 'ATR_00077G00260',
		(int) 1 => 'ATR_00044G00090',
		(int) 2 => 'ATR_00002G00850'
	),
	'sac' => array(
		(int) 0 => 'YHR008C'
	),
	'fcy' => array(
		(int) 0 => 'FC006G08770',
		(int) 1 => 'FC006G04690'
	),
	'emh' => array(
		(int) 0 => 'emh315300',
		(int) 1 => 'emh596200'
	),
	'ccr' => array(
		(int) 0 => 'ccr48440',
		(int) 1 => 'ccr175720'
	),
	'nga' => array(
		(int) 0 => 'Naga_100558g2',
		(int) 1 => 'Naga_100051g29'
	)
)
$gene_id = 'FBgn0010213'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'FBgn0010213'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'AP00G16600'
$gf_placeholder = 'HOM03P014805'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_053G00030',
	'e_value' => '3e-30',
	'bit_score' => '113',
	'alignment_length' => '79',
	'identity_percentage' => '56.96',
	'gf' => array(
		'HOMFAM' => 'HOM03P000403',
		'ORTHOFAM' => 'ORTHO03P171617'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00030'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'FBgn0010213' => array(
			'gene_id' => 'FBgn0010213',
			'e_value' => '7e-162',
			'bit_score' => '453',
			'alignment_length' => '218',
			'identity_percentage' => '100.00',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004931' => array(
			'gene_id' => 'WBGene00004931',
			'e_value' => '5e-94',
			'bit_score' => '281',
			'alignment_length' => '205',
			'identity_percentage' => '63.90',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000006818' => array(
			'gene_id' => 'ENSMUSG00000006818',
			'e_value' => '3e-92',
			'bit_score' => '276',
			'alignment_length' => '214',
			'identity_percentage' => '59.81',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000112096' => array(
			'gene_id' => 'ENSG00000112096',
			'e_value' => '4e-92',
			'bit_score' => '276',
			'alignment_length' => '203',
			'identity_percentage' => '62.07',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0011G02290' => array(
			'gene_id' => 'AA0011G02290',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '216',
			'identity_percentage' => '56.02',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004932' => array(
			'gene_id' => 'WBGene00004932',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '214',
			'identity_percentage' => '60.75',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR13G07570' => array(
			'gene_id' => 'CR13G07570',
			'e_value' => '4e-85',
			'bit_score' => '258',
			'alignment_length' => '196',
			'identity_percentage' => '62.24',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP05G03430' => array(
			'gene_id' => 'TP05G03430',
			'e_value' => '6e-85',
			'bit_score' => '259',
			'alignment_length' => '200',
			'identity_percentage' => '57.50',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G133110' => array(
			'gene_id' => 'VC00G133110',
			'e_value' => '1e-83',
			'bit_score' => '255',
			'alignment_length' => '196',
			'identity_percentage' => '60.20',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G17260' => array(
			'gene_id' => 'PI00G17260',
			'e_value' => '8e-81',
			'bit_score' => '248',
			'alignment_length' => '199',
			'identity_percentage' => '57.29',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.13g02410' => array(
			'gene_id' => 'RCC4223.13g02410',
			'e_value' => '2e-80',
			'bit_score' => '247',
			'alignment_length' => '203',
			'identity_percentage' => '56.16',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_01G05850' => array(
			'gene_id' => 'PTI_01G05850',
			'e_value' => '7e-80',
			'bit_score' => '245',
			'alignment_length' => '196',
			'identity_percentage' => '56.63',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0002G00340' => array(
			'gene_id' => 'ES0002G00340',
			'e_value' => '4e-79',
			'bit_score' => '243',
			'alignment_length' => '197',
			'identity_percentage' => '54.31',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs144800' => array(
			'gene_id' => 'phs144800',
			'e_value' => '4e-79',
			'bit_score' => '242',
			'alignment_length' => '198',
			'identity_percentage' => '56.57',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP04G02430' => array(
			'gene_id' => 'MP04G02430',
			'e_value' => '8e-79',
			'bit_score' => '243',
			'alignment_length' => '213',
			'identity_percentage' => '53.52',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_04G03810' => array(
			'gene_id' => 'ORCC809_04G03810',
			'e_value' => '2e-77',
			'bit_score' => '238',
			'alignment_length' => '194',
			'identity_percentage' => '54.64',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G04240' => array(
			'gene_id' => 'CV00G04240',
			'e_value' => '5e-76',
			'bit_score' => '234',
			'alignment_length' => '203',
			'identity_percentage' => '53.20',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_08G02540' => array(
			'gene_id' => 'MRCC299_08G02540',
			'e_value' => '5e-76',
			'bit_score' => '235',
			'alignment_length' => '195',
			'identity_percentage' => '54.87',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0271106' => array(
			'gene_id' => 'DDB_G0271106',
			'e_value' => '7e-76',
			'bit_score' => '235',
			'alignment_length' => '200',
			'identity_percentage' => '54.00',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G20920' => array(
			'gene_id' => 'HE0000G20920',
			'e_value' => '7e-76',
			'bit_score' => '236',
			'alignment_length' => '188',
			'identity_percentage' => '56.91',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_18G00290' => array(
			'gene_id' => 'BPRRCC1105_18G00290',
			'e_value' => '3e-75',
			'bit_score' => '239',
			'alignment_length' => '190',
			'identity_percentage' => '56.32',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_02G01500' => array(
			'gene_id' => 'OM_02G01500',
			'e_value' => '8e-75',
			'bit_score' => '233',
			'alignment_length' => '214',
			'identity_percentage' => '51.40',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_004G02130' => array(
			'gene_id' => 'CNC64A_004G02130',
			'e_value' => '4e-73',
			'bit_score' => '227',
			'alignment_length' => '200',
			'identity_percentage' => '52.50',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu127160' => array(
			'gene_id' => 'gsu127160',
			'e_value' => '4e-73',
			'bit_score' => '228',
			'alignment_length' => '215',
			'identity_percentage' => '50.23',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL04G01390' => array(
			'gene_id' => 'OL04G01390',
			'e_value' => '2e-72',
			'bit_score' => '226',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50430' => array(
			'gene_id' => 'AP00G50430',
			'e_value' => '4e-72',
			'bit_score' => '226',
			'alignment_length' => '218',
			'identity_percentage' => '49.08',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_04G01400' => array(
			'gene_id' => 'OT_04G01400',
			'e_value' => '1e-71',
			'bit_score' => '224',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00174G00210' => array(
			'gene_id' => 'PP00174G00210',
			'e_value' => '2e-70',
			'bit_score' => '221',
			'alignment_length' => '214',
			'identity_percentage' => '50.47',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G10920' => array(
			'gene_id' => 'AT3G10920',
			'e_value' => '3e-70',
			'bit_score' => '221',
			'alignment_length' => '206',
			'identity_percentage' => '51.46',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G40000' => array(
			'gene_id' => 'AC00G40000',
			'e_value' => '1e-68',
			'bit_score' => '216',
			'alignment_length' => '220',
			'identity_percentage' => '46.82',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50420' => array(
			'gene_id' => 'AP00G50420',
			'e_value' => '4e-66',
			'bit_score' => '211',
			'alignment_length' => '210',
			'identity_percentage' => '47.14',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS05G25850' => array(
			'gene_id' => 'OS05G25850',
			'e_value' => '1e-64',
			'bit_score' => '206',
			'alignment_length' => '188',
			'identity_percentage' => '52.66',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1486.01' => array(
			'gene_id' => 'SPAC1486.01',
			'e_value' => '5e-60',
			'bit_score' => '194',
			'alignment_length' => '201',
			'identity_percentage' => '49.25',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G56350' => array(
			'gene_id' => 'AT3G56350',
			'e_value' => '4e-59',
			'bit_score' => '192',
			'alignment_length' => '213',
			'identity_percentage' => '44.60',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM18G01580' => array(
			'gene_id' => 'CM18G01580',
			'e_value' => '2e-58',
			'bit_score' => '191',
			'alignment_length' => '198',
			'identity_percentage' => '48.99',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte226360' => array(
			'gene_id' => 'pte226360',
			'e_value' => '2e-57',
			'bit_score' => '187',
			'alignment_length' => '197',
			'identity_percentage' => '45.18',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00077G00260' => array(
			'gene_id' => 'ATR_00077G00260',
			'e_value' => '2e-56',
			'bit_score' => '184',
			'alignment_length' => '170',
			'identity_percentage' => '52.94',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G35570' => array(
			'gene_id' => 'CV00G35570',
			'e_value' => '3e-55',
			'bit_score' => '182',
			'alignment_length' => '208',
			'identity_percentage' => '45.19',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G81010' => array(
			'gene_id' => 'VC00G81010',
			'e_value' => '3e-53',
			'bit_score' => '177',
			'alignment_length' => '209',
			'identity_percentage' => '42.58',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu78240' => array(
			'gene_id' => 'gsu78240',
			'e_value' => '7e-53',
			'bit_score' => '176',
			'alignment_length' => '213',
			'identity_percentage' => '42.72',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G06330' => array(
			'gene_id' => 'CR02G06330',
			'e_value' => '1e-52',
			'bit_score' => '175',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YHR008C' => array(
			'gene_id' => 'YHR008C',
			'e_value' => '3e-52',
			'bit_score' => '174',
			'alignment_length' => '219',
			'identity_percentage' => '42.47',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G08770' => array(
			'gene_id' => 'FC006G08770',
			'e_value' => '6e-52',
			'bit_score' => '173',
			'alignment_length' => '213',
			'identity_percentage' => '43.66',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP03G03480' => array(
			'gene_id' => 'TP03G03480',
			'e_value' => '2e-50',
			'bit_score' => '170',
			'alignment_length' => '212',
			'identity_percentage' => '41.98',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G41340' => array(
			'gene_id' => 'AC00G41340',
			'e_value' => '5e-50',
			'bit_score' => '168',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_09G03520' => array(
			'gene_id' => 'PTI_09G03520',
			'e_value' => '8e-49',
			'bit_score' => '167',
			'alignment_length' => '227',
			'identity_percentage' => '38.33',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0091G00170' => array(
			'gene_id' => 'ES0091G00170',
			'e_value' => '1e-48',
			'bit_score' => '167',
			'alignment_length' => '200',
			'identity_percentage' => '43.50',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh315300' => array(
			'gene_id' => 'emh315300',
			'e_value' => '3e-48',
			'bit_score' => '165',
			'alignment_length' => '200',
			'identity_percentage' => '43.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM14G00230' => array(
			'gene_id' => 'CM14G00230',
			'e_value' => '5e-48',
			'bit_score' => '163',
			'alignment_length' => '210',
			'identity_percentage' => '42.86',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G38930' => array(
			'gene_id' => 'PI00G38930',
			'e_value' => '6e-47',
			'bit_score' => '160',
			'alignment_length' => '210',
			'identity_percentage' => '41.43',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G04690' => array(
			'gene_id' => 'FC006G04690',
			'e_value' => '1e-46',
			'bit_score' => '160',
			'alignment_length' => '208',
			'identity_percentage' => '41.83',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01100' => array(
			'gene_id' => 'CNC64A_003G01100',
			'e_value' => '3e-45',
			'bit_score' => '155',
			'alignment_length' => '207',
			'identity_percentage' => '40.58',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01480' => array(
			'gene_id' => 'RCC4223.10g01480',
			'e_value' => '6e-45',
			'bit_score' => '155',
			'alignment_length' => '210',
			'identity_percentage' => '40.95',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0013G02190' => array(
			'gene_id' => 'AA0013G02190',
			'e_value' => '2e-44',
			'bit_score' => '154',
			'alignment_length' => '203',
			'identity_percentage' => '44.33',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G39720' => array(
			'gene_id' => 'CV00G39720',
			'e_value' => '3e-44',
			'bit_score' => '154',
			'alignment_length' => '216',
			'identity_percentage' => '39.35',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr48440' => array(
			'gene_id' => 'ccr48440',
			'e_value' => '2e-42',
			'bit_score' => '151',
			'alignment_length' => '232',
			'identity_percentage' => '37.50',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.09g02580' => array(
			'gene_id' => 'RCC4223.09g02580',
			'e_value' => '1e-41',
			'bit_score' => '147',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr175720' => array(
			'gene_id' => 'ccr175720',
			'e_value' => '3e-41',
			'bit_score' => '145',
			'alignment_length' => '209',
			'identity_percentage' => '38.28',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G45530' => array(
			'gene_id' => 'PI00G45530',
			'e_value' => '7e-40',
			'bit_score' => '142',
			'alignment_length' => '207',
			'identity_percentage' => '37.68',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G40850' => array(
			'gene_id' => 'CV00G40850',
			'e_value' => '6e-38',
			'bit_score' => '138',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G29940' => array(
			'gene_id' => 'CV00G29940',
			'e_value' => '6e-38',
			'bit_score' => '136',
			'alignment_length' => '204',
			'identity_percentage' => '38.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0201G00270' => array(
			'gene_id' => 'ES0201G00270',
			'e_value' => '4e-37',
			'bit_score' => '134',
			'alignment_length' => '186',
			'identity_percentage' => '38.17',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60650' => array(
			'gene_id' => 'AC00G60650',
			'e_value' => '2e-36',
			'bit_score' => '134',
			'alignment_length' => '216',
			'identity_percentage' => '36.57',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM20G00280' => array(
			'gene_id' => 'CM20G00280',
			'e_value' => '4e-36',
			'bit_score' => '135',
			'alignment_length' => '205',
			'identity_percentage' => '40.98',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100558g2' => array(
			'gene_id' => 'Naga_100558g2',
			'e_value' => '4e-36',
			'bit_score' => '131',
			'alignment_length' => '196',
			'identity_percentage' => '37.76',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0421G00040' => array(
			'gene_id' => 'ES0421G00040',
			'e_value' => '7e-36',
			'bit_score' => '132',
			'alignment_length' => '189',
			'identity_percentage' => '39.15',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0219G00060' => array(
			'gene_id' => 'ES0219G00060',
			'e_value' => '1e-35',
			'bit_score' => '131',
			'alignment_length' => '188',
			'identity_percentage' => '38.30',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G88020' => array(
			'gene_id' => 'CV00G88020',
			'e_value' => '2e-34',
			'bit_score' => '130',
			'alignment_length' => '201',
			'identity_percentage' => '38.31',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G01760' => array(
			'gene_id' => 'CR12G01760',
			'e_value' => '3e-33',
			'bit_score' => '126',
			'alignment_length' => '217',
			'identity_percentage' => '37.79',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR10G04050' => array(
			'gene_id' => 'CR10G04050',
			'e_value' => '8e-33',
			'bit_score' => '124',
			'alignment_length' => '220',
			'identity_percentage' => '34.09',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G37390' => array(
			'gene_id' => 'AP00G37390',
			'e_value' => '2e-32',
			'bit_score' => '121',
			'alignment_length' => '206',
			'identity_percentage' => '35.44',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_002G04590' => array(
			'gene_id' => 'CNC64A_002G04590',
			'e_value' => '3e-32',
			'bit_score' => '122',
			'alignment_length' => '210',
			'identity_percentage' => '36.19',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00002G02230' => array(
			'gene_id' => 'PP00002G02230',
			'e_value' => '4e-32',
			'bit_score' => '123',
			'alignment_length' => '214',
			'identity_percentage' => '36.92',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G57020' => array(
			'gene_id' => 'PI00G57020',
			'e_value' => '8e-31',
			'bit_score' => '117',
			'alignment_length' => '190',
			'identity_percentage' => '39.47',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00030' => array(
			'gene_id' => 'CNC64A_053G00030',
			'e_value' => '3e-30',
			'bit_score' => '113',
			'alignment_length' => '79',
			'identity_percentage' => '56.96',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60420' => array(
			'gene_id' => 'AC00G60420',
			'e_value' => '1e-29',
			'bit_score' => '115',
			'alignment_length' => '210',
			'identity_percentage' => '36.67',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100051g29' => array(
			'gene_id' => 'Naga_100051g29',
			'e_value' => '2e-29',
			'bit_score' => '115',
			'alignment_length' => '203',
			'identity_percentage' => '33.50',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11410' => array(
			'gene_id' => 'AC00G11410',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11400' => array(
			'gene_id' => 'AC00G11400',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105360' => array(
			'gene_id' => 'VC00G105360',
			'e_value' => '7e-29',
			'bit_score' => '114',
			'alignment_length' => '221',
			'identity_percentage' => '34.39',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G23690' => array(
			'gene_id' => 'VC00G23690',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '248',
			'identity_percentage' => '31.45',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR17G01600' => array(
			'gene_id' => 'CR17G01600',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '215',
			'identity_percentage' => '36.28',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105340' => array(
			'gene_id' => 'VC00G105340',
			'e_value' => '6e-28',
			'bit_score' => '111',
			'alignment_length' => '190',
			'identity_percentage' => '35.26',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G00620' => array(
			'gene_id' => 'TP07G00620',
			'e_value' => '1e-27',
			'bit_score' => '110',
			'alignment_length' => '194',
			'identity_percentage' => '34.54',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00044G00090' => array(
			'gene_id' => 'ATR_00044G00090',
			'e_value' => '2e-27',
			'bit_score' => '110',
			'alignment_length' => '219',
			'identity_percentage' => '32.88',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105370' => array(
			'gene_id' => 'VC00G105370',
			'e_value' => '6e-27',
			'bit_score' => '108',
			'alignment_length' => '216',
			'identity_percentage' => '32.41',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G05110' => array(
			'gene_id' => 'OS06G05110',
			'e_value' => '2e-26',
			'bit_score' => '107',
			'alignment_length' => '216',
			'identity_percentage' => '31.94',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G25100' => array(
			'gene_id' => 'AT4G25100',
			'e_value' => '8e-26',
			'bit_score' => '105',
			'alignment_length' => '216',
			'identity_percentage' => '33.33',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR16G10150' => array(
			'gene_id' => 'CR16G10150',
			'e_value' => '1e-25',
			'bit_score' => '105',
			'alignment_length' => '232',
			'identity_percentage' => '31.47',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G51100' => array(
			'gene_id' => 'AT5G51100',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '216',
			'identity_percentage' => '31.02',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G117070' => array(
			'gene_id' => 'VC00G117070',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '252',
			'identity_percentage' => '30.16',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01110' => array(
			'gene_id' => 'CNC64A_003G01110',
			'e_value' => '3e-24',
			'bit_score' => '100',
			'alignment_length' => '204',
			'identity_percentage' => '33.82',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte87360' => array(
			'gene_id' => 'pte87360',
			'e_value' => '1e-23',
			'bit_score' => '99.0',
			'alignment_length' => '190',
			'identity_percentage' => '34.74',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00022G01800' => array(
			'gene_id' => 'PP00022G01800',
			'e_value' => '2e-23',
			'bit_score' => '99.4',
			'alignment_length' => '209',
			'identity_percentage' => '34.45',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G23310' => array(
			'gene_id' => 'AT5G23310',
			'e_value' => '2e-23',
			'bit_score' => '99.8',
			'alignment_length' => '212',
			'identity_percentage' => '30.66',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07700' => array(
			'gene_id' => 'AP00G07700',
			'e_value' => '4e-23',
			'bit_score' => '95.9',
			'alignment_length' => '119',
			'identity_percentage' => '42.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G00850' => array(
			'gene_id' => 'ATR_00002G00850',
			'e_value' => '8e-23',
			'bit_score' => '97.8',
			'alignment_length' => '233',
			'identity_percentage' => '32.62',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte256500' => array(
			'gene_id' => 'pte256500',
			'e_value' => '1e-19',
			'bit_score' => '87.0',
			'alignment_length' => '143',
			'identity_percentage' => '37.06',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh596200' => array(
			'gene_id' => 'emh596200',
			'e_value' => '2e-19',
			'bit_score' => '85.5',
			'alignment_length' => '97',
			'identity_percentage' => '38.14',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G02500' => array(
			'gene_id' => 'OS06G02500',
			'e_value' => '2e-15',
			'bit_score' => '77.8',
			'alignment_length' => '213',
			'identity_percentage' => '28.17',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07690' => array(
			'gene_id' => 'AP00G07690',
			'e_value' => '5e-15',
			'bit_score' => '72.4',
			'alignment_length' => '86',
			'identity_percentage' => '43.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G44530' => array(
			'gene_id' => 'HE0000G44530',
			'e_value' => '2e-14',
			'bit_score' => '69.7',
			'alignment_length' => '56',
			'identity_percentage' => '57.14',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00010' => array(
			'gene_id' => 'CNC64A_053G00010',
			'e_value' => '2e-13',
			'bit_score' => '67.4',
			'alignment_length' => '53',
			'identity_percentage' => '58.49',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC3H7.04' => array(
			'gene_id' => 'SPBC3H7.04',
			'e_value' => '3e-10',
			'bit_score' => '61.2',
			'alignment_length' => '141',
			'identity_percentage' => '26.24',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'drm' => array(
			(int) 0 => 'FBgn0010213'
		),
		'cel' => array(
			(int) 0 => 'WBGene00004931',
			(int) 1 => 'WBGene00004932'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000006818'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000112096'
		),
		'aan' => array(
			(int) 0 => 'AA0011G02290',
			(int) 1 => 'AA0013G02190'
		),
		'cre' => array(
			(int) 0 => 'CR13G07570',
			(int) 1 => 'CR02G06330',
			(int) 2 => 'CR12G01760',
			(int) 3 => 'CR10G04050',
			(int) 4 => 'CR17G01600',
			(int) 5 => 'CR16G10150'
		),
		'tps' => array(
			(int) 0 => 'TP05G03430',
			(int) 1 => 'TP03G03480',
			(int) 2 => 'TP07G00620'
		),
		'vca' => array(
			(int) 0 => 'VC00G133110',
			(int) 1 => 'VC00G81010',
			(int) 2 => 'VC00G105360',
			(int) 3 => 'VC00G23690',
			(int) 4 => 'VC00G105340',
			(int) 5 => 'VC00G105370',
			(int) 6 => 'VC00G117070'
		),
		'pse3' => array(
			(int) 0 => 'PI00G17260',
			(int) 1 => 'PI00G38930',
			(int) 2 => 'PI00G45530',
			(int) 3 => 'PI00G57020'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.13g02410',
			(int) 1 => 'RCC4223.10g01480',
			(int) 2 => 'RCC4223.09g02580'
		),
		'ptri' => array(
			(int) 0 => 'PTI_01G05850',
			(int) 1 => 'PTI_09G03520'
		),
		'esi' => array(
			(int) 0 => 'ES0002G00340',
			(int) 1 => 'ES0091G00170',
			(int) 2 => 'ES0201G00270',
			(int) 3 => 'ES0421G00040',
			(int) 4 => 'ES0219G00060'
		),
		'phs' => array(
			(int) 0 => 'phs144800'
		),
		'mpu' => array(
			(int) 0 => 'MP04G02430'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_04G03810'
		),
		'cvu' => array(
			(int) 0 => 'CV00G04240',
			(int) 1 => 'CV00G35570',
			(int) 2 => 'CV00G39720',
			(int) 3 => 'CV00G40850',
			(int) 4 => 'CV00G29940',
			(int) 5 => 'CV00G88020'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_08G02540'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0271106'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G20920',
			(int) 1 => 'HE0000G44530'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_18G00290'
		),
		'ome' => array(
			(int) 0 => 'OM_02G01500'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_004G02130',
			(int) 1 => 'CNC64A_003G01100',
			(int) 2 => 'CNC64A_002G04590',
			(int) 3 => 'CNC64A_003G01110'
		),
		'gsu' => array(
			(int) 0 => 'gsu127160',
			(int) 1 => 'gsu78240'
		),
		'olu' => array(
			(int) 0 => 'OL04G01390'
		),
		'apr' => array(
			(int) 0 => 'AP00G50430',
			(int) 1 => 'AP00G50420',
			(int) 2 => 'AP00G37390',
			(int) 3 => 'AP00G07700',
			(int) 4 => 'AP00G07690'
		),
		'ota' => array(
			(int) 0 => 'OT_04G01400'
		),
		'ppa' => array(
			(int) 0 => 'PP00174G00210',
			(int) 1 => 'PP00002G02230',
			(int) 2 => 'PP00022G01800'
		),
		'ath' => array(
			(int) 0 => 'AT3G10920',
			(int) 1 => 'AT3G56350',
			(int) 2 => 'AT4G25100',
			(int) 3 => 'AT5G51100',
			(int) 4 => 'AT5G23310'
		),
		'acg' => array(
			(int) 0 => 'AC00G40000',
			(int) 1 => 'AC00G41340',
			(int) 2 => 'AC00G60650',
			(int) 3 => 'AC00G60420',
			(int) 4 => 'AC00G11410',
			(int) 5 => 'AC00G11400'
		),
		'osa' => array(
			(int) 0 => 'OS05G25850',
			(int) 1 => 'OS06G05110',
			(int) 2 => 'OS06G02500'
		),
		'scp' => array(
			(int) 0 => 'SPAC1486.01',
			(int) 1 => 'SPBC3H7.04'
		),
		'cme' => array(
			(int) 0 => 'CM18G01580',
			(int) 1 => 'CM14G00230',
			(int) 2 => 'CM20G00280'
		),
		'pte' => array(
			(int) 0 => 'pte226360',
			(int) 1 => 'pte87360',
			(int) 2 => 'pte256500'
		),
		'atr' => array(
			(int) 0 => 'ATR_00077G00260',
			(int) 1 => 'ATR_00044G00090',
			(int) 2 => 'ATR_00002G00850'
		),
		'sac' => array(
			(int) 0 => 'YHR008C'
		),
		'fcy' => array(
			(int) 0 => 'FC006G08770',
			(int) 1 => 'FC006G04690'
		),
		'emh' => array(
			(int) 0 => 'emh315300',
			(int) 1 => 'emh596200'
		),
		'ccr' => array(
			(int) 0 => 'ccr48440',
			(int) 1 => 'ccr175720'
		),
		'nga' => array(
			(int) 0 => 'Naga_100558g2',
			(int) 1 => 'Naga_100051g29'
		)
	),
	'gene_id' => 'FBgn0010213',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'FBgn0010213',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'AP00G16600',
	'gf_placeholder' => 'HOM03P014805',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'FBgn0010213' => array(
		'gene_id' => 'FBgn0010213',
		'e_value' => '7e-162',
		'bit_score' => '453',
		'alignment_length' => '218',
		'identity_percentage' => '100.00',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004931' => array(
		'gene_id' => 'WBGene00004931',
		'e_value' => '5e-94',
		'bit_score' => '281',
		'alignment_length' => '205',
		'identity_percentage' => '63.90',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSMUSG00000006818' => array(
		'gene_id' => 'ENSMUSG00000006818',
		'e_value' => '3e-92',
		'bit_score' => '276',
		'alignment_length' => '214',
		'identity_percentage' => '59.81',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSG00000112096' => array(
		'gene_id' => 'ENSG00000112096',
		'e_value' => '4e-92',
		'bit_score' => '276',
		'alignment_length' => '203',
		'identity_percentage' => '62.07',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AA0011G02290' => array(
		'gene_id' => 'AA0011G02290',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '216',
		'identity_percentage' => '56.02',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004932' => array(
		'gene_id' => 'WBGene00004932',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '214',
		'identity_percentage' => '60.75',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CR13G07570' => array(
		'gene_id' => 'CR13G07570',
		'e_value' => '4e-85',
		'bit_score' => '258',
		'alignment_length' => '196',
		'identity_percentage' => '62.24',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP05G03430' => array(
		'gene_id' => 'TP05G03430',
		'e_value' => '6e-85',
		'bit_score' => '259',
		'alignment_length' => '200',
		'identity_percentage' => '57.50',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'VC00G133110' => array(
		'gene_id' => 'VC00G133110',
		'e_value' => '1e-83',
		'bit_score' => '255',
		'alignment_length' => '196',
		'identity_percentage' => '60.20',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PI00G17260' => array(
		'gene_id' => 'PI00G17260',
		'e_value' => '8e-81',
		'bit_score' => '248',
		'alignment_length' => '199',
		'identity_percentage' => '57.29',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.13g02410' => array(
		'gene_id' => 'RCC4223.13g02410',
		'e_value' => '2e-80',
		'bit_score' => '247',
		'alignment_length' => '203',
		'identity_percentage' => '56.16',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PTI_01G05850' => array(
		'gene_id' => 'PTI_01G05850',
		'e_value' => '7e-80',
		'bit_score' => '245',
		'alignment_length' => '196',
		'identity_percentage' => '56.63',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ES0002G00340' => array(
		'gene_id' => 'ES0002G00340',
		'e_value' => '4e-79',
		'bit_score' => '243',
		'alignment_length' => '197',
		'identity_percentage' => '54.31',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'phs144800' => array(
		'gene_id' => 'phs144800',
		'e_value' => '4e-79',
		'bit_score' => '242',
		'alignment_length' => '198',
		'identity_percentage' => '56.57',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MP04G02430' => array(
		'gene_id' => 'MP04G02430',
		'e_value' => '8e-79',
		'bit_score' => '243',
		'alignment_length' => '213',
		'identity_percentage' => '53.52',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ORCC809_04G03810' => array(
		'gene_id' => 'ORCC809_04G03810',
		'e_value' => '2e-77',
		'bit_score' => '238',
		'alignment_length' => '194',
		'identity_percentage' => '54.64',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G04240' => array(
		'gene_id' => 'CV00G04240',
		'e_value' => '5e-76',
		'bit_score' => '234',
		'alignment_length' => '203',
		'identity_percentage' => '53.20',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MRCC299_08G02540' => array(
		'gene_id' => 'MRCC299_08G02540',
		'e_value' => '5e-76',
		'bit_score' => '235',
		'alignment_length' => '195',
		'identity_percentage' => '54.87',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'DDB_G0271106' => array(
		'gene_id' => 'DDB_G0271106',
		'e_value' => '7e-76',
		'bit_score' => '235',
		'alignment_length' => '200',
		'identity_percentage' => '54.00',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'HE0000G20920' => array(
		'gene_id' => 'HE0000G20920',
		'e_value' => '7e-76',
		'bit_score' => '236',
		'alignment_length' => '188',
		'identity_percentage' => '56.91',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'BPRRCC1105_18G00290' => array(
		'gene_id' => 'BPRRCC1105_18G00290',
		'e_value' => '3e-75',
		'bit_score' => '239',
		'alignment_length' => '190',
		'identity_percentage' => '56.32',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OM_02G01500' => array(
		'gene_id' => 'OM_02G01500',
		'e_value' => '8e-75',
		'bit_score' => '233',
		'alignment_length' => '214',
		'identity_percentage' => '51.40',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CNC64A_004G02130' => array(
		'gene_id' => 'CNC64A_004G02130',
		'e_value' => '4e-73',
		'bit_score' => '227',
		'alignment_length' => '200',
		'identity_percentage' => '52.50',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'gsu127160' => array(
		'gene_id' => 'gsu127160',
		'e_value' => '4e-73',
		'bit_score' => '228',
		'alignment_length' => '215',
		'identity_percentage' => '50.23',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OL04G01390' => array(
		'gene_id' => 'OL04G01390',
		'e_value' => '2e-72',
		'bit_score' => '226',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50430' => array(
		'gene_id' => 'AP00G50430',
		'e_value' => '4e-72',
		'bit_score' => '226',
		'alignment_length' => '218',
		'identity_percentage' => '49.08',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OT_04G01400' => array(
		'gene_id' => 'OT_04G01400',
		'e_value' => '1e-71',
		'bit_score' => '224',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PP00174G00210' => array(
		'gene_id' => 'PP00174G00210',
		'e_value' => '2e-70',
		'bit_score' => '221',
		'alignment_length' => '214',
		'identity_percentage' => '50.47',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G10920' => array(
		'gene_id' => 'AT3G10920',
		'e_value' => '3e-70',
		'bit_score' => '221',
		'alignment_length' => '206',
		'identity_percentage' => '51.46',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AC00G40000' => array(
		'gene_id' => 'AC00G40000',
		'e_value' => '1e-68',
		'bit_score' => '216',
		'alignment_length' => '220',
		'identity_percentage' => '46.82',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50420' => array(
		'gene_id' => 'AP00G50420',
		'e_value' => '4e-66',
		'bit_score' => '211',
		'alignment_length' => '210',
		'identity_percentage' => '47.14',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'OS05G25850' => array(
		'gene_id' => 'OS05G25850',
		'e_value' => '1e-64',
		'bit_score' => '206',
		'alignment_length' => '188',
		'identity_percentage' => '52.66',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'SPAC1486.01' => array(
		'gene_id' => 'SPAC1486.01',
		'e_value' => '5e-60',
		'bit_score' => '194',
		'alignment_length' => '201',
		'identity_percentage' => '49.25',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G56350' => array(
		'gene_id' => 'AT3G56350',
		'e_value' => '4e-59',
		'bit_score' => '192',
		'alignment_length' => '213',
		'identity_percentage' => '44.60',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P199736'
		)
	),
	'CM18G01580' => array(
		'gene_id' => 'CM18G01580',
		'e_value' => '2e-58',
		'bit_score' => '191',
		'alignment_length' => '198',
		'identity_percentage' => '48.99',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'pte226360' => array(
		'gene_id' => 'pte226360',
		'e_value' => '2e-57',
		'bit_score' => '187',
		'alignment_length' => '197',
		'identity_percentage' => '45.18',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ATR_00077G00260' => array(
		'gene_id' => 'ATR_00077G00260',
		'e_value' => '2e-56',
		'bit_score' => '184',
		'alignment_length' => '170',
		'identity_percentage' => '52.94',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G35570' => array(
		'gene_id' => 'CV00G35570',
		'e_value' => '3e-55',
		'bit_score' => '182',
		'alignment_length' => '208',
		'identity_percentage' => '45.19',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'VC00G81010' => array(
		'gene_id' => 'VC00G81010',
		'e_value' => '3e-53',
		'bit_score' => '177',
		'alignment_length' => '209',
		'identity_percentage' => '42.58',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'gsu78240' => array(
		'gene_id' => 'gsu78240',
		'e_value' => '7e-53',
		'bit_score' => '176',
		'alignment_length' => '213',
		'identity_percentage' => '42.72',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CR02G06330' => array(
		'gene_id' => 'CR02G06330',
		'e_value' => '1e-52',
		'bit_score' => '175',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'YHR008C' => array(
		'gene_id' => 'YHR008C',
		'e_value' => '3e-52',
		'bit_score' => '174',
		'alignment_length' => '219',
		'identity_percentage' => '42.47',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'FC006G08770' => array(
		'gene_id' => 'FC006G08770',
		'e_value' => '6e-52',
		'bit_score' => '173',
		'alignment_length' => '213',
		'identity_percentage' => '43.66',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP03G03480' => array(
		'gene_id' => 'TP03G03480',
		'e_value' => '2e-50',
		'bit_score' => '170',
		'alignment_length' => '212',
		'identity_percentage' => '41.98',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AC00G41340' => array(
		'gene_id' => 'AC00G41340',
		'e_value' => '5e-50',
		'bit_score' => '168',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PTI_09G03520' => array(
		'gene_id' => 'PTI_09G03520',
		'e_value' => '8e-49',
		'bit_score' => '167',
		'alignment_length' => '227',
		'identity_percentage' => '38.33',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0091G00170' => array(
		'gene_id' => 'ES0091G00170',
		'e_value' => '1e-48',
		'bit_score' => '167',
		'alignment_length' => '200',
		'identity_percentage' => '43.50',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'emh315300' => array(
		'gene_id' => 'emh315300',
		'e_value' => '3e-48',
		'bit_score' => '165',
		'alignment_length' => '200',
		'identity_percentage' => '43.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CM14G00230' => array(
		'gene_id' => 'CM14G00230',
		'e_value' => '5e-48',
		'bit_score' => '163',
		'alignment_length' => '210',
		'identity_percentage' => '42.86',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G38930' => array(
		'gene_id' => 'PI00G38930',
		'e_value' => '6e-47',
		'bit_score' => '160',
		'alignment_length' => '210',
		'identity_percentage' => '41.43',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'FC006G04690' => array(
		'gene_id' => 'FC006G04690',
		'e_value' => '1e-46',
		'bit_score' => '160',
		'alignment_length' => '208',
		'identity_percentage' => '41.83',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CNC64A_003G01100' => array(
		'gene_id' => 'CNC64A_003G01100',
		'e_value' => '3e-45',
		'bit_score' => '155',
		'alignment_length' => '207',
		'identity_percentage' => '40.58',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'RCC4223.10g01480' => array(
		'gene_id' => 'RCC4223.10g01480',
		'e_value' => '6e-45',
		'bit_score' => '155',
		'alignment_length' => '210',
		'identity_percentage' => '40.95',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AA0013G02190' => array(
		'gene_id' => 'AA0013G02190',
		'e_value' => '2e-44',
		'bit_score' => '154',
		'alignment_length' => '203',
		'identity_percentage' => '44.33',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CV00G39720' => array(
		'gene_id' => 'CV00G39720',
		'e_value' => '3e-44',
		'bit_score' => '154',
		'alignment_length' => '216',
		'identity_percentage' => '39.35',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092266'
		)
	),
	'ccr48440' => array(
		'gene_id' => 'ccr48440',
		'e_value' => '2e-42',
		'bit_score' => '151',
		'alignment_length' => '232',
		'identity_percentage' => '37.50',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.09g02580' => array(
		'gene_id' => 'RCC4223.09g02580',
		'e_value' => '1e-41',
		'bit_score' => '147',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ccr175720' => array(
		'gene_id' => 'ccr175720',
		'e_value' => '3e-41',
		'bit_score' => '145',
		'alignment_length' => '209',
		'identity_percentage' => '38.28',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G45530' => array(
		'gene_id' => 'PI00G45530',
		'e_value' => '7e-40',
		'bit_score' => '142',
		'alignment_length' => '207',
		'identity_percentage' => '37.68',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CV00G40850' => array(
		'gene_id' => 'CV00G40850',
		'e_value' => '6e-38',
		'bit_score' => '138',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092263'
		)
	),
	'CV00G29940' => array(
		'gene_id' => 'CV00G29940',
		'e_value' => '6e-38',
		'bit_score' => '136',
		'alignment_length' => '204',
		'identity_percentage' => '38.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ES0201G00270' => array(
		'gene_id' => 'ES0201G00270',
		'e_value' => '4e-37',
		'bit_score' => '134',
		'alignment_length' => '186',
		'identity_percentage' => '38.17',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G60650' => array(
		'gene_id' => 'AC00G60650',
		'e_value' => '2e-36',
		'bit_score' => '134',
		'alignment_length' => '216',
		'identity_percentage' => '36.57',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'CM20G00280' => array(
		'gene_id' => 'CM20G00280',
		'e_value' => '4e-36',
		'bit_score' => '135',
		'alignment_length' => '205',
		'identity_percentage' => '40.98',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P125267'
		)
	),
	'Naga_100558g2' => array(
		'gene_id' => 'Naga_100558g2',
		'e_value' => '4e-36',
		'bit_score' => '131',
		'alignment_length' => '196',
		'identity_percentage' => '37.76',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0421G00040' => array(
		'gene_id' => 'ES0421G00040',
		'e_value' => '7e-36',
		'bit_score' => '132',
		'alignment_length' => '189',
		'identity_percentage' => '39.15',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'ES0219G00060' => array(
		'gene_id' => 'ES0219G00060',
		'e_value' => '1e-35',
		'bit_score' => '131',
		'alignment_length' => '188',
		'identity_percentage' => '38.30',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'CV00G88020' => array(
		'gene_id' => 'CV00G88020',
		'e_value' => '2e-34',
		'bit_score' => '130',
		'alignment_length' => '201',
		'identity_percentage' => '38.31',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P104180'
		)
	),
	'CR12G01760' => array(
		'gene_id' => 'CR12G01760',
		'e_value' => '3e-33',
		'bit_score' => '126',
		'alignment_length' => '217',
		'identity_percentage' => '37.79',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CR10G04050' => array(
		'gene_id' => 'CR10G04050',
		'e_value' => '8e-33',
		'bit_score' => '124',
		'alignment_length' => '220',
		'identity_percentage' => '34.09',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G37390' => array(
		'gene_id' => 'AP00G37390',
		'e_value' => '2e-32',
		'bit_score' => '121',
		'alignment_length' => '206',
		'identity_percentage' => '35.44',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CNC64A_002G04590' => array(
		'gene_id' => 'CNC64A_002G04590',
		'e_value' => '3e-32',
		'bit_score' => '122',
		'alignment_length' => '210',
		'identity_percentage' => '36.19',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00002G02230' => array(
		'gene_id' => 'PP00002G02230',
		'e_value' => '4e-32',
		'bit_score' => '123',
		'alignment_length' => '214',
		'identity_percentage' => '36.92',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PI00G57020' => array(
		'gene_id' => 'PI00G57020',
		'e_value' => '8e-31',
		'bit_score' => '117',
		'alignment_length' => '190',
		'identity_percentage' => '39.47',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P095062'
		)
	),
	'CNC64A_053G00030' => array(
		'gene_id' => 'CNC64A_053G00030',
		'e_value' => '3e-30',
		'bit_score' => '113',
		'alignment_length' => '79',
		'identity_percentage' => '56.96',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P171617'
		)
	),
	'AC00G60420' => array(
		'gene_id' => 'AC00G60420',
		'e_value' => '1e-29',
		'bit_score' => '115',
		'alignment_length' => '210',
		'identity_percentage' => '36.67',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'Naga_100051g29' => array(
		'gene_id' => 'Naga_100051g29',
		'e_value' => '2e-29',
		'bit_score' => '115',
		'alignment_length' => '203',
		'identity_percentage' => '33.50',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11410' => array(
		'gene_id' => 'AC00G11410',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11400' => array(
		'gene_id' => 'AC00G11400',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105360' => array(
		'gene_id' => 'VC00G105360',
		'e_value' => '7e-29',
		'bit_score' => '114',
		'alignment_length' => '221',
		'identity_percentage' => '34.39',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P151582'
		)
	),
	'VC00G23690' => array(
		'gene_id' => 'VC00G23690',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '248',
		'identity_percentage' => '31.45',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'CR17G01600' => array(
		'gene_id' => 'CR17G01600',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '215',
		'identity_percentage' => '36.28',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P133541'
		)
	),
	'VC00G105340' => array(
		'gene_id' => 'VC00G105340',
		'e_value' => '6e-28',
		'bit_score' => '111',
		'alignment_length' => '190',
		'identity_percentage' => '35.26',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'TP07G00620' => array(
		'gene_id' => 'TP07G00620',
		'e_value' => '1e-27',
		'bit_score' => '110',
		'alignment_length' => '194',
		'identity_percentage' => '34.54',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ATR_00044G00090' => array(
		'gene_id' => 'ATR_00044G00090',
		'e_value' => '2e-27',
		'bit_score' => '110',
		'alignment_length' => '219',
		'identity_percentage' => '32.88',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105370' => array(
		'gene_id' => 'VC00G105370',
		'e_value' => '6e-27',
		'bit_score' => '108',
		'alignment_length' => '216',
		'identity_percentage' => '32.41',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P188832'
		)
	),
	'OS06G05110' => array(
		'gene_id' => 'OS06G05110',
		'e_value' => '2e-26',
		'bit_score' => '107',
		'alignment_length' => '216',
		'identity_percentage' => '31.94',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT4G25100' => array(
		'gene_id' => 'AT4G25100',
		'e_value' => '8e-26',
		'bit_score' => '105',
		'alignment_length' => '216',
		'identity_percentage' => '33.33',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CR16G10150' => array(
		'gene_id' => 'CR16G10150',
		'e_value' => '1e-25',
		'bit_score' => '105',
		'alignment_length' => '232',
		'identity_percentage' => '31.47',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'AT5G51100' => array(
		'gene_id' => 'AT5G51100',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '216',
		'identity_percentage' => '31.02',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G117070' => array(
		'gene_id' => 'VC00G117070',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '252',
		'identity_percentage' => '30.16',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CNC64A_003G01110' => array(
		'gene_id' => 'CNC64A_003G01110',
		'e_value' => '3e-24',
		'bit_score' => '100',
		'alignment_length' => '204',
		'identity_percentage' => '33.82',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P120410'
		)
	),
	'pte87360' => array(
		'gene_id' => 'pte87360',
		'e_value' => '1e-23',
		'bit_score' => '99.0',
		'alignment_length' => '190',
		'identity_percentage' => '34.74',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00022G01800' => array(
		'gene_id' => 'PP00022G01800',
		'e_value' => '2e-23',
		'bit_score' => '99.4',
		'alignment_length' => '209',
		'identity_percentage' => '34.45',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT5G23310' => array(
		'gene_id' => 'AT5G23310',
		'e_value' => '2e-23',
		'bit_score' => '99.8',
		'alignment_length' => '212',
		'identity_percentage' => '30.66',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07700' => array(
		'gene_id' => 'AP00G07700',
		'e_value' => '4e-23',
		'bit_score' => '95.9',
		'alignment_length' => '119',
		'identity_percentage' => '42.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ATR_00002G00850' => array(
		'gene_id' => 'ATR_00002G00850',
		'e_value' => '8e-23',
		'bit_score' => '97.8',
		'alignment_length' => '233',
		'identity_percentage' => '32.62',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'pte256500' => array(
		'gene_id' => 'pte256500',
		'e_value' => '1e-19',
		'bit_score' => '87.0',
		'alignment_length' => '143',
		'identity_percentage' => '37.06',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P111717'
		)
	),
	'emh596200' => array(
		'gene_id' => 'emh596200',
		'e_value' => '2e-19',
		'bit_score' => '85.5',
		'alignment_length' => '97',
		'identity_percentage' => '38.14',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P124956'
		)
	),
	'OS06G02500' => array(
		'gene_id' => 'OS06G02500',
		'e_value' => '2e-15',
		'bit_score' => '77.8',
		'alignment_length' => '213',
		'identity_percentage' => '28.17',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07690' => array(
		'gene_id' => 'AP00G07690',
		'e_value' => '5e-15',
		'bit_score' => '72.4',
		'alignment_length' => '86',
		'identity_percentage' => '43.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P162479'
		)
	),
	'HE0000G44530' => array(
		'gene_id' => 'HE0000G44530',
		'e_value' => '2e-14',
		'bit_score' => '69.7',
		'alignment_length' => '56',
		'identity_percentage' => '57.14',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P174303'
		)
	),
	'CNC64A_053G00010' => array(
		'gene_id' => 'CNC64A_053G00010',
		'e_value' => '2e-13',
		'bit_score' => '67.4',
		'alignment_length' => '53',
		'identity_percentage' => '58.49',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P190791'
		)
	),
	'SPBC3H7.04' => array(
		'gene_id' => 'SPBC3H7.04',
		'e_value' => '3e-10',
		'bit_score' => '61.2',
		'alignment_length' => '141',
		'identity_percentage' => '26.24',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P119626'
		)
	)
)
$similarity_hits_species = array(
	'drm' => array(
		(int) 0 => 'FBgn0010213'
	),
	'cel' => array(
		(int) 0 => 'WBGene00004931',
		(int) 1 => 'WBGene00004932'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000006818'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000112096'
	),
	'aan' => array(
		(int) 0 => 'AA0011G02290',
		(int) 1 => 'AA0013G02190'
	),
	'cre' => array(
		(int) 0 => 'CR13G07570',
		(int) 1 => 'CR02G06330',
		(int) 2 => 'CR12G01760',
		(int) 3 => 'CR10G04050',
		(int) 4 => 'CR17G01600',
		(int) 5 => 'CR16G10150'
	),
	'tps' => array(
		(int) 0 => 'TP05G03430',
		(int) 1 => 'TP03G03480',
		(int) 2 => 'TP07G00620'
	),
	'vca' => array(
		(int) 0 => 'VC00G133110',
		(int) 1 => 'VC00G81010',
		(int) 2 => 'VC00G105360',
		(int) 3 => 'VC00G23690',
		(int) 4 => 'VC00G105340',
		(int) 5 => 'VC00G105370',
		(int) 6 => 'VC00G117070'
	),
	'pse3' => array(
		(int) 0 => 'PI00G17260',
		(int) 1 => 'PI00G38930',
		(int) 2 => 'PI00G45530',
		(int) 3 => 'PI00G57020'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.13g02410',
		(int) 1 => 'RCC4223.10g01480',
		(int) 2 => 'RCC4223.09g02580'
	),
	'ptri' => array(
		(int) 0 => 'PTI_01G05850',
		(int) 1 => 'PTI_09G03520'
	),
	'esi' => array(
		(int) 0 => 'ES0002G00340',
		(int) 1 => 'ES0091G00170',
		(int) 2 => 'ES0201G00270',
		(int) 3 => 'ES0421G00040',
		(int) 4 => 'ES0219G00060'
	),
	'phs' => array(
		(int) 0 => 'phs144800'
	),
	'mpu' => array(
		(int) 0 => 'MP04G02430'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_04G03810'
	),
	'cvu' => array(
		(int) 0 => 'CV00G04240',
		(int) 1 => 'CV00G35570',
		(int) 2 => 'CV00G39720',
		(int) 3 => 'CV00G40850',
		(int) 4 => 'CV00G29940',
		(int) 5 => 'CV00G88020'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_08G02540'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0271106'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G20920',
		(int) 1 => 'HE0000G44530'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_18G00290'
	),
	'ome' => array(
		(int) 0 => 'OM_02G01500'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_004G02130',
		(int) 1 => 'CNC64A_003G01100',
		(int) 2 => 'CNC64A_002G04590',
		(int) 3 => 'CNC64A_003G01110'
	),
	'gsu' => array(
		(int) 0 => 'gsu127160',
		(int) 1 => 'gsu78240'
	),
	'olu' => array(
		(int) 0 => 'OL04G01390'
	),
	'apr' => array(
		(int) 0 => 'AP00G50430',
		(int) 1 => 'AP00G50420',
		(int) 2 => 'AP00G37390',
		(int) 3 => 'AP00G07700',
		(int) 4 => 'AP00G07690'
	),
	'ota' => array(
		(int) 0 => 'OT_04G01400'
	),
	'ppa' => array(
		(int) 0 => 'PP00174G00210',
		(int) 1 => 'PP00002G02230',
		(int) 2 => 'PP00022G01800'
	),
	'ath' => array(
		(int) 0 => 'AT3G10920',
		(int) 1 => 'AT3G56350',
		(int) 2 => 'AT4G25100',
		(int) 3 => 'AT5G51100',
		(int) 4 => 'AT5G23310'
	),
	'acg' => array(
		(int) 0 => 'AC00G40000',
		(int) 1 => 'AC00G41340',
		(int) 2 => 'AC00G60650',
		(int) 3 => 'AC00G60420',
		(int) 4 => 'AC00G11410',
		(int) 5 => 'AC00G11400'
	),
	'osa' => array(
		(int) 0 => 'OS05G25850',
		(int) 1 => 'OS06G05110',
		(int) 2 => 'OS06G02500'
	),
	'scp' => array(
		(int) 0 => 'SPAC1486.01',
		(int) 1 => 'SPBC3H7.04'
	),
	'cme' => array(
		(int) 0 => 'CM18G01580',
		(int) 1 => 'CM14G00230',
		(int) 2 => 'CM20G00280'
	),
	'pte' => array(
		(int) 0 => 'pte226360',
		(int) 1 => 'pte87360',
		(int) 2 => 'pte256500'
	),
	'atr' => array(
		(int) 0 => 'ATR_00077G00260',
		(int) 1 => 'ATR_00044G00090',
		(int) 2 => 'ATR_00002G00850'
	),
	'sac' => array(
		(int) 0 => 'YHR008C'
	),
	'fcy' => array(
		(int) 0 => 'FC006G08770',
		(int) 1 => 'FC006G04690'
	),
	'emh' => array(
		(int) 0 => 'emh315300',
		(int) 1 => 'emh596200'
	),
	'ccr' => array(
		(int) 0 => 'ccr48440',
		(int) 1 => 'ccr175720'
	),
	'nga' => array(
		(int) 0 => 'Naga_100558g2',
		(int) 1 => 'Naga_100051g29'
	)
)
$gene_id = 'FBgn0010213'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'FBgn0010213'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'AP00G16600'
$gf_placeholder = 'HOM03P014805'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_053G00030',
	'e_value' => '3e-30',
	'bit_score' => '113',
	'alignment_length' => '79',
	'identity_percentage' => '56.96',
	'gf' => array(
		'HOMFAM' => 'HOM03P000403',
		'ORTHOFAM' => 'ORTHO03P171617'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00030'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'FBgn0010213' => array(
			'gene_id' => 'FBgn0010213',
			'e_value' => '7e-162',
			'bit_score' => '453',
			'alignment_length' => '218',
			'identity_percentage' => '100.00',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004931' => array(
			'gene_id' => 'WBGene00004931',
			'e_value' => '5e-94',
			'bit_score' => '281',
			'alignment_length' => '205',
			'identity_percentage' => '63.90',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000006818' => array(
			'gene_id' => 'ENSMUSG00000006818',
			'e_value' => '3e-92',
			'bit_score' => '276',
			'alignment_length' => '214',
			'identity_percentage' => '59.81',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000112096' => array(
			'gene_id' => 'ENSG00000112096',
			'e_value' => '4e-92',
			'bit_score' => '276',
			'alignment_length' => '203',
			'identity_percentage' => '62.07',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0011G02290' => array(
			'gene_id' => 'AA0011G02290',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '216',
			'identity_percentage' => '56.02',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004932' => array(
			'gene_id' => 'WBGene00004932',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '214',
			'identity_percentage' => '60.75',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR13G07570' => array(
			'gene_id' => 'CR13G07570',
			'e_value' => '4e-85',
			'bit_score' => '258',
			'alignment_length' => '196',
			'identity_percentage' => '62.24',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP05G03430' => array(
			'gene_id' => 'TP05G03430',
			'e_value' => '6e-85',
			'bit_score' => '259',
			'alignment_length' => '200',
			'identity_percentage' => '57.50',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G133110' => array(
			'gene_id' => 'VC00G133110',
			'e_value' => '1e-83',
			'bit_score' => '255',
			'alignment_length' => '196',
			'identity_percentage' => '60.20',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G17260' => array(
			'gene_id' => 'PI00G17260',
			'e_value' => '8e-81',
			'bit_score' => '248',
			'alignment_length' => '199',
			'identity_percentage' => '57.29',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.13g02410' => array(
			'gene_id' => 'RCC4223.13g02410',
			'e_value' => '2e-80',
			'bit_score' => '247',
			'alignment_length' => '203',
			'identity_percentage' => '56.16',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_01G05850' => array(
			'gene_id' => 'PTI_01G05850',
			'e_value' => '7e-80',
			'bit_score' => '245',
			'alignment_length' => '196',
			'identity_percentage' => '56.63',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0002G00340' => array(
			'gene_id' => 'ES0002G00340',
			'e_value' => '4e-79',
			'bit_score' => '243',
			'alignment_length' => '197',
			'identity_percentage' => '54.31',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs144800' => array(
			'gene_id' => 'phs144800',
			'e_value' => '4e-79',
			'bit_score' => '242',
			'alignment_length' => '198',
			'identity_percentage' => '56.57',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP04G02430' => array(
			'gene_id' => 'MP04G02430',
			'e_value' => '8e-79',
			'bit_score' => '243',
			'alignment_length' => '213',
			'identity_percentage' => '53.52',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_04G03810' => array(
			'gene_id' => 'ORCC809_04G03810',
			'e_value' => '2e-77',
			'bit_score' => '238',
			'alignment_length' => '194',
			'identity_percentage' => '54.64',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G04240' => array(
			'gene_id' => 'CV00G04240',
			'e_value' => '5e-76',
			'bit_score' => '234',
			'alignment_length' => '203',
			'identity_percentage' => '53.20',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_08G02540' => array(
			'gene_id' => 'MRCC299_08G02540',
			'e_value' => '5e-76',
			'bit_score' => '235',
			'alignment_length' => '195',
			'identity_percentage' => '54.87',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0271106' => array(
			'gene_id' => 'DDB_G0271106',
			'e_value' => '7e-76',
			'bit_score' => '235',
			'alignment_length' => '200',
			'identity_percentage' => '54.00',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G20920' => array(
			'gene_id' => 'HE0000G20920',
			'e_value' => '7e-76',
			'bit_score' => '236',
			'alignment_length' => '188',
			'identity_percentage' => '56.91',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_18G00290' => array(
			'gene_id' => 'BPRRCC1105_18G00290',
			'e_value' => '3e-75',
			'bit_score' => '239',
			'alignment_length' => '190',
			'identity_percentage' => '56.32',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_02G01500' => array(
			'gene_id' => 'OM_02G01500',
			'e_value' => '8e-75',
			'bit_score' => '233',
			'alignment_length' => '214',
			'identity_percentage' => '51.40',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_004G02130' => array(
			'gene_id' => 'CNC64A_004G02130',
			'e_value' => '4e-73',
			'bit_score' => '227',
			'alignment_length' => '200',
			'identity_percentage' => '52.50',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu127160' => array(
			'gene_id' => 'gsu127160',
			'e_value' => '4e-73',
			'bit_score' => '228',
			'alignment_length' => '215',
			'identity_percentage' => '50.23',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL04G01390' => array(
			'gene_id' => 'OL04G01390',
			'e_value' => '2e-72',
			'bit_score' => '226',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50430' => array(
			'gene_id' => 'AP00G50430',
			'e_value' => '4e-72',
			'bit_score' => '226',
			'alignment_length' => '218',
			'identity_percentage' => '49.08',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_04G01400' => array(
			'gene_id' => 'OT_04G01400',
			'e_value' => '1e-71',
			'bit_score' => '224',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00174G00210' => array(
			'gene_id' => 'PP00174G00210',
			'e_value' => '2e-70',
			'bit_score' => '221',
			'alignment_length' => '214',
			'identity_percentage' => '50.47',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G10920' => array(
			'gene_id' => 'AT3G10920',
			'e_value' => '3e-70',
			'bit_score' => '221',
			'alignment_length' => '206',
			'identity_percentage' => '51.46',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G40000' => array(
			'gene_id' => 'AC00G40000',
			'e_value' => '1e-68',
			'bit_score' => '216',
			'alignment_length' => '220',
			'identity_percentage' => '46.82',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50420' => array(
			'gene_id' => 'AP00G50420',
			'e_value' => '4e-66',
			'bit_score' => '211',
			'alignment_length' => '210',
			'identity_percentage' => '47.14',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS05G25850' => array(
			'gene_id' => 'OS05G25850',
			'e_value' => '1e-64',
			'bit_score' => '206',
			'alignment_length' => '188',
			'identity_percentage' => '52.66',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1486.01' => array(
			'gene_id' => 'SPAC1486.01',
			'e_value' => '5e-60',
			'bit_score' => '194',
			'alignment_length' => '201',
			'identity_percentage' => '49.25',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G56350' => array(
			'gene_id' => 'AT3G56350',
			'e_value' => '4e-59',
			'bit_score' => '192',
			'alignment_length' => '213',
			'identity_percentage' => '44.60',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM18G01580' => array(
			'gene_id' => 'CM18G01580',
			'e_value' => '2e-58',
			'bit_score' => '191',
			'alignment_length' => '198',
			'identity_percentage' => '48.99',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte226360' => array(
			'gene_id' => 'pte226360',
			'e_value' => '2e-57',
			'bit_score' => '187',
			'alignment_length' => '197',
			'identity_percentage' => '45.18',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00077G00260' => array(
			'gene_id' => 'ATR_00077G00260',
			'e_value' => '2e-56',
			'bit_score' => '184',
			'alignment_length' => '170',
			'identity_percentage' => '52.94',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G35570' => array(
			'gene_id' => 'CV00G35570',
			'e_value' => '3e-55',
			'bit_score' => '182',
			'alignment_length' => '208',
			'identity_percentage' => '45.19',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G81010' => array(
			'gene_id' => 'VC00G81010',
			'e_value' => '3e-53',
			'bit_score' => '177',
			'alignment_length' => '209',
			'identity_percentage' => '42.58',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu78240' => array(
			'gene_id' => 'gsu78240',
			'e_value' => '7e-53',
			'bit_score' => '176',
			'alignment_length' => '213',
			'identity_percentage' => '42.72',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G06330' => array(
			'gene_id' => 'CR02G06330',
			'e_value' => '1e-52',
			'bit_score' => '175',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YHR008C' => array(
			'gene_id' => 'YHR008C',
			'e_value' => '3e-52',
			'bit_score' => '174',
			'alignment_length' => '219',
			'identity_percentage' => '42.47',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G08770' => array(
			'gene_id' => 'FC006G08770',
			'e_value' => '6e-52',
			'bit_score' => '173',
			'alignment_length' => '213',
			'identity_percentage' => '43.66',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP03G03480' => array(
			'gene_id' => 'TP03G03480',
			'e_value' => '2e-50',
			'bit_score' => '170',
			'alignment_length' => '212',
			'identity_percentage' => '41.98',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G41340' => array(
			'gene_id' => 'AC00G41340',
			'e_value' => '5e-50',
			'bit_score' => '168',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_09G03520' => array(
			'gene_id' => 'PTI_09G03520',
			'e_value' => '8e-49',
			'bit_score' => '167',
			'alignment_length' => '227',
			'identity_percentage' => '38.33',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0091G00170' => array(
			'gene_id' => 'ES0091G00170',
			'e_value' => '1e-48',
			'bit_score' => '167',
			'alignment_length' => '200',
			'identity_percentage' => '43.50',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh315300' => array(
			'gene_id' => 'emh315300',
			'e_value' => '3e-48',
			'bit_score' => '165',
			'alignment_length' => '200',
			'identity_percentage' => '43.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM14G00230' => array(
			'gene_id' => 'CM14G00230',
			'e_value' => '5e-48',
			'bit_score' => '163',
			'alignment_length' => '210',
			'identity_percentage' => '42.86',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G38930' => array(
			'gene_id' => 'PI00G38930',
			'e_value' => '6e-47',
			'bit_score' => '160',
			'alignment_length' => '210',
			'identity_percentage' => '41.43',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G04690' => array(
			'gene_id' => 'FC006G04690',
			'e_value' => '1e-46',
			'bit_score' => '160',
			'alignment_length' => '208',
			'identity_percentage' => '41.83',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01100' => array(
			'gene_id' => 'CNC64A_003G01100',
			'e_value' => '3e-45',
			'bit_score' => '155',
			'alignment_length' => '207',
			'identity_percentage' => '40.58',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01480' => array(
			'gene_id' => 'RCC4223.10g01480',
			'e_value' => '6e-45',
			'bit_score' => '155',
			'alignment_length' => '210',
			'identity_percentage' => '40.95',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0013G02190' => array(
			'gene_id' => 'AA0013G02190',
			'e_value' => '2e-44',
			'bit_score' => '154',
			'alignment_length' => '203',
			'identity_percentage' => '44.33',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G39720' => array(
			'gene_id' => 'CV00G39720',
			'e_value' => '3e-44',
			'bit_score' => '154',
			'alignment_length' => '216',
			'identity_percentage' => '39.35',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr48440' => array(
			'gene_id' => 'ccr48440',
			'e_value' => '2e-42',
			'bit_score' => '151',
			'alignment_length' => '232',
			'identity_percentage' => '37.50',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.09g02580' => array(
			'gene_id' => 'RCC4223.09g02580',
			'e_value' => '1e-41',
			'bit_score' => '147',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr175720' => array(
			'gene_id' => 'ccr175720',
			'e_value' => '3e-41',
			'bit_score' => '145',
			'alignment_length' => '209',
			'identity_percentage' => '38.28',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G45530' => array(
			'gene_id' => 'PI00G45530',
			'e_value' => '7e-40',
			'bit_score' => '142',
			'alignment_length' => '207',
			'identity_percentage' => '37.68',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G40850' => array(
			'gene_id' => 'CV00G40850',
			'e_value' => '6e-38',
			'bit_score' => '138',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G29940' => array(
			'gene_id' => 'CV00G29940',
			'e_value' => '6e-38',
			'bit_score' => '136',
			'alignment_length' => '204',
			'identity_percentage' => '38.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0201G00270' => array(
			'gene_id' => 'ES0201G00270',
			'e_value' => '4e-37',
			'bit_score' => '134',
			'alignment_length' => '186',
			'identity_percentage' => '38.17',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60650' => array(
			'gene_id' => 'AC00G60650',
			'e_value' => '2e-36',
			'bit_score' => '134',
			'alignment_length' => '216',
			'identity_percentage' => '36.57',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM20G00280' => array(
			'gene_id' => 'CM20G00280',
			'e_value' => '4e-36',
			'bit_score' => '135',
			'alignment_length' => '205',
			'identity_percentage' => '40.98',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100558g2' => array(
			'gene_id' => 'Naga_100558g2',
			'e_value' => '4e-36',
			'bit_score' => '131',
			'alignment_length' => '196',
			'identity_percentage' => '37.76',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0421G00040' => array(
			'gene_id' => 'ES0421G00040',
			'e_value' => '7e-36',
			'bit_score' => '132',
			'alignment_length' => '189',
			'identity_percentage' => '39.15',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0219G00060' => array(
			'gene_id' => 'ES0219G00060',
			'e_value' => '1e-35',
			'bit_score' => '131',
			'alignment_length' => '188',
			'identity_percentage' => '38.30',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G88020' => array(
			'gene_id' => 'CV00G88020',
			'e_value' => '2e-34',
			'bit_score' => '130',
			'alignment_length' => '201',
			'identity_percentage' => '38.31',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G01760' => array(
			'gene_id' => 'CR12G01760',
			'e_value' => '3e-33',
			'bit_score' => '126',
			'alignment_length' => '217',
			'identity_percentage' => '37.79',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR10G04050' => array(
			'gene_id' => 'CR10G04050',
			'e_value' => '8e-33',
			'bit_score' => '124',
			'alignment_length' => '220',
			'identity_percentage' => '34.09',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G37390' => array(
			'gene_id' => 'AP00G37390',
			'e_value' => '2e-32',
			'bit_score' => '121',
			'alignment_length' => '206',
			'identity_percentage' => '35.44',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_002G04590' => array(
			'gene_id' => 'CNC64A_002G04590',
			'e_value' => '3e-32',
			'bit_score' => '122',
			'alignment_length' => '210',
			'identity_percentage' => '36.19',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00002G02230' => array(
			'gene_id' => 'PP00002G02230',
			'e_value' => '4e-32',
			'bit_score' => '123',
			'alignment_length' => '214',
			'identity_percentage' => '36.92',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G57020' => array(
			'gene_id' => 'PI00G57020',
			'e_value' => '8e-31',
			'bit_score' => '117',
			'alignment_length' => '190',
			'identity_percentage' => '39.47',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00030' => array(
			'gene_id' => 'CNC64A_053G00030',
			'e_value' => '3e-30',
			'bit_score' => '113',
			'alignment_length' => '79',
			'identity_percentage' => '56.96',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60420' => array(
			'gene_id' => 'AC00G60420',
			'e_value' => '1e-29',
			'bit_score' => '115',
			'alignment_length' => '210',
			'identity_percentage' => '36.67',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100051g29' => array(
			'gene_id' => 'Naga_100051g29',
			'e_value' => '2e-29',
			'bit_score' => '115',
			'alignment_length' => '203',
			'identity_percentage' => '33.50',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11410' => array(
			'gene_id' => 'AC00G11410',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11400' => array(
			'gene_id' => 'AC00G11400',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105360' => array(
			'gene_id' => 'VC00G105360',
			'e_value' => '7e-29',
			'bit_score' => '114',
			'alignment_length' => '221',
			'identity_percentage' => '34.39',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G23690' => array(
			'gene_id' => 'VC00G23690',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '248',
			'identity_percentage' => '31.45',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR17G01600' => array(
			'gene_id' => 'CR17G01600',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '215',
			'identity_percentage' => '36.28',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105340' => array(
			'gene_id' => 'VC00G105340',
			'e_value' => '6e-28',
			'bit_score' => '111',
			'alignment_length' => '190',
			'identity_percentage' => '35.26',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G00620' => array(
			'gene_id' => 'TP07G00620',
			'e_value' => '1e-27',
			'bit_score' => '110',
			'alignment_length' => '194',
			'identity_percentage' => '34.54',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00044G00090' => array(
			'gene_id' => 'ATR_00044G00090',
			'e_value' => '2e-27',
			'bit_score' => '110',
			'alignment_length' => '219',
			'identity_percentage' => '32.88',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105370' => array(
			'gene_id' => 'VC00G105370',
			'e_value' => '6e-27',
			'bit_score' => '108',
			'alignment_length' => '216',
			'identity_percentage' => '32.41',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G05110' => array(
			'gene_id' => 'OS06G05110',
			'e_value' => '2e-26',
			'bit_score' => '107',
			'alignment_length' => '216',
			'identity_percentage' => '31.94',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G25100' => array(
			'gene_id' => 'AT4G25100',
			'e_value' => '8e-26',
			'bit_score' => '105',
			'alignment_length' => '216',
			'identity_percentage' => '33.33',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR16G10150' => array(
			'gene_id' => 'CR16G10150',
			'e_value' => '1e-25',
			'bit_score' => '105',
			'alignment_length' => '232',
			'identity_percentage' => '31.47',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G51100' => array(
			'gene_id' => 'AT5G51100',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '216',
			'identity_percentage' => '31.02',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G117070' => array(
			'gene_id' => 'VC00G117070',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '252',
			'identity_percentage' => '30.16',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01110' => array(
			'gene_id' => 'CNC64A_003G01110',
			'e_value' => '3e-24',
			'bit_score' => '100',
			'alignment_length' => '204',
			'identity_percentage' => '33.82',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte87360' => array(
			'gene_id' => 'pte87360',
			'e_value' => '1e-23',
			'bit_score' => '99.0',
			'alignment_length' => '190',
			'identity_percentage' => '34.74',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00022G01800' => array(
			'gene_id' => 'PP00022G01800',
			'e_value' => '2e-23',
			'bit_score' => '99.4',
			'alignment_length' => '209',
			'identity_percentage' => '34.45',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G23310' => array(
			'gene_id' => 'AT5G23310',
			'e_value' => '2e-23',
			'bit_score' => '99.8',
			'alignment_length' => '212',
			'identity_percentage' => '30.66',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07700' => array(
			'gene_id' => 'AP00G07700',
			'e_value' => '4e-23',
			'bit_score' => '95.9',
			'alignment_length' => '119',
			'identity_percentage' => '42.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G00850' => array(
			'gene_id' => 'ATR_00002G00850',
			'e_value' => '8e-23',
			'bit_score' => '97.8',
			'alignment_length' => '233',
			'identity_percentage' => '32.62',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte256500' => array(
			'gene_id' => 'pte256500',
			'e_value' => '1e-19',
			'bit_score' => '87.0',
			'alignment_length' => '143',
			'identity_percentage' => '37.06',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh596200' => array(
			'gene_id' => 'emh596200',
			'e_value' => '2e-19',
			'bit_score' => '85.5',
			'alignment_length' => '97',
			'identity_percentage' => '38.14',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G02500' => array(
			'gene_id' => 'OS06G02500',
			'e_value' => '2e-15',
			'bit_score' => '77.8',
			'alignment_length' => '213',
			'identity_percentage' => '28.17',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07690' => array(
			'gene_id' => 'AP00G07690',
			'e_value' => '5e-15',
			'bit_score' => '72.4',
			'alignment_length' => '86',
			'identity_percentage' => '43.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G44530' => array(
			'gene_id' => 'HE0000G44530',
			'e_value' => '2e-14',
			'bit_score' => '69.7',
			'alignment_length' => '56',
			'identity_percentage' => '57.14',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00010' => array(
			'gene_id' => 'CNC64A_053G00010',
			'e_value' => '2e-13',
			'bit_score' => '67.4',
			'alignment_length' => '53',
			'identity_percentage' => '58.49',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC3H7.04' => array(
			'gene_id' => 'SPBC3H7.04',
			'e_value' => '3e-10',
			'bit_score' => '61.2',
			'alignment_length' => '141',
			'identity_percentage' => '26.24',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'drm' => array(
			(int) 0 => 'FBgn0010213'
		),
		'cel' => array(
			(int) 0 => 'WBGene00004931',
			(int) 1 => 'WBGene00004932'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000006818'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000112096'
		),
		'aan' => array(
			(int) 0 => 'AA0011G02290',
			(int) 1 => 'AA0013G02190'
		),
		'cre' => array(
			(int) 0 => 'CR13G07570',
			(int) 1 => 'CR02G06330',
			(int) 2 => 'CR12G01760',
			(int) 3 => 'CR10G04050',
			(int) 4 => 'CR17G01600',
			(int) 5 => 'CR16G10150'
		),
		'tps' => array(
			(int) 0 => 'TP05G03430',
			(int) 1 => 'TP03G03480',
			(int) 2 => 'TP07G00620'
		),
		'vca' => array(
			(int) 0 => 'VC00G133110',
			(int) 1 => 'VC00G81010',
			(int) 2 => 'VC00G105360',
			(int) 3 => 'VC00G23690',
			(int) 4 => 'VC00G105340',
			(int) 5 => 'VC00G105370',
			(int) 6 => 'VC00G117070'
		),
		'pse3' => array(
			(int) 0 => 'PI00G17260',
			(int) 1 => 'PI00G38930',
			(int) 2 => 'PI00G45530',
			(int) 3 => 'PI00G57020'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.13g02410',
			(int) 1 => 'RCC4223.10g01480',
			(int) 2 => 'RCC4223.09g02580'
		),
		'ptri' => array(
			(int) 0 => 'PTI_01G05850',
			(int) 1 => 'PTI_09G03520'
		),
		'esi' => array(
			(int) 0 => 'ES0002G00340',
			(int) 1 => 'ES0091G00170',
			(int) 2 => 'ES0201G00270',
			(int) 3 => 'ES0421G00040',
			(int) 4 => 'ES0219G00060'
		),
		'phs' => array(
			(int) 0 => 'phs144800'
		),
		'mpu' => array(
			(int) 0 => 'MP04G02430'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_04G03810'
		),
		'cvu' => array(
			(int) 0 => 'CV00G04240',
			(int) 1 => 'CV00G35570',
			(int) 2 => 'CV00G39720',
			(int) 3 => 'CV00G40850',
			(int) 4 => 'CV00G29940',
			(int) 5 => 'CV00G88020'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_08G02540'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0271106'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G20920',
			(int) 1 => 'HE0000G44530'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_18G00290'
		),
		'ome' => array(
			(int) 0 => 'OM_02G01500'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_004G02130',
			(int) 1 => 'CNC64A_003G01100',
			(int) 2 => 'CNC64A_002G04590',
			(int) 3 => 'CNC64A_003G01110'
		),
		'gsu' => array(
			(int) 0 => 'gsu127160',
			(int) 1 => 'gsu78240'
		),
		'olu' => array(
			(int) 0 => 'OL04G01390'
		),
		'apr' => array(
			(int) 0 => 'AP00G50430',
			(int) 1 => 'AP00G50420',
			(int) 2 => 'AP00G37390',
			(int) 3 => 'AP00G07700',
			(int) 4 => 'AP00G07690'
		),
		'ota' => array(
			(int) 0 => 'OT_04G01400'
		),
		'ppa' => array(
			(int) 0 => 'PP00174G00210',
			(int) 1 => 'PP00002G02230',
			(int) 2 => 'PP00022G01800'
		),
		'ath' => array(
			(int) 0 => 'AT3G10920',
			(int) 1 => 'AT3G56350',
			(int) 2 => 'AT4G25100',
			(int) 3 => 'AT5G51100',
			(int) 4 => 'AT5G23310'
		),
		'acg' => array(
			(int) 0 => 'AC00G40000',
			(int) 1 => 'AC00G41340',
			(int) 2 => 'AC00G60650',
			(int) 3 => 'AC00G60420',
			(int) 4 => 'AC00G11410',
			(int) 5 => 'AC00G11400'
		),
		'osa' => array(
			(int) 0 => 'OS05G25850',
			(int) 1 => 'OS06G05110',
			(int) 2 => 'OS06G02500'
		),
		'scp' => array(
			(int) 0 => 'SPAC1486.01',
			(int) 1 => 'SPBC3H7.04'
		),
		'cme' => array(
			(int) 0 => 'CM18G01580',
			(int) 1 => 'CM14G00230',
			(int) 2 => 'CM20G00280'
		),
		'pte' => array(
			(int) 0 => 'pte226360',
			(int) 1 => 'pte87360',
			(int) 2 => 'pte256500'
		),
		'atr' => array(
			(int) 0 => 'ATR_00077G00260',
			(int) 1 => 'ATR_00044G00090',
			(int) 2 => 'ATR_00002G00850'
		),
		'sac' => array(
			(int) 0 => 'YHR008C'
		),
		'fcy' => array(
			(int) 0 => 'FC006G08770',
			(int) 1 => 'FC006G04690'
		),
		'emh' => array(
			(int) 0 => 'emh315300',
			(int) 1 => 'emh596200'
		),
		'ccr' => array(
			(int) 0 => 'ccr48440',
			(int) 1 => 'ccr175720'
		),
		'nga' => array(
			(int) 0 => 'Naga_100558g2',
			(int) 1 => 'Naga_100051g29'
		)
	),
	'gene_id' => 'FBgn0010213',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'FBgn0010213',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'AP00G16600',
	'gf_placeholder' => 'HOM03P014805',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'FBgn0010213' => array(
		'gene_id' => 'FBgn0010213',
		'e_value' => '7e-162',
		'bit_score' => '453',
		'alignment_length' => '218',
		'identity_percentage' => '100.00',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004931' => array(
		'gene_id' => 'WBGene00004931',
		'e_value' => '5e-94',
		'bit_score' => '281',
		'alignment_length' => '205',
		'identity_percentage' => '63.90',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSMUSG00000006818' => array(
		'gene_id' => 'ENSMUSG00000006818',
		'e_value' => '3e-92',
		'bit_score' => '276',
		'alignment_length' => '214',
		'identity_percentage' => '59.81',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSG00000112096' => array(
		'gene_id' => 'ENSG00000112096',
		'e_value' => '4e-92',
		'bit_score' => '276',
		'alignment_length' => '203',
		'identity_percentage' => '62.07',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AA0011G02290' => array(
		'gene_id' => 'AA0011G02290',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '216',
		'identity_percentage' => '56.02',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004932' => array(
		'gene_id' => 'WBGene00004932',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '214',
		'identity_percentage' => '60.75',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CR13G07570' => array(
		'gene_id' => 'CR13G07570',
		'e_value' => '4e-85',
		'bit_score' => '258',
		'alignment_length' => '196',
		'identity_percentage' => '62.24',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP05G03430' => array(
		'gene_id' => 'TP05G03430',
		'e_value' => '6e-85',
		'bit_score' => '259',
		'alignment_length' => '200',
		'identity_percentage' => '57.50',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'VC00G133110' => array(
		'gene_id' => 'VC00G133110',
		'e_value' => '1e-83',
		'bit_score' => '255',
		'alignment_length' => '196',
		'identity_percentage' => '60.20',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PI00G17260' => array(
		'gene_id' => 'PI00G17260',
		'e_value' => '8e-81',
		'bit_score' => '248',
		'alignment_length' => '199',
		'identity_percentage' => '57.29',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.13g02410' => array(
		'gene_id' => 'RCC4223.13g02410',
		'e_value' => '2e-80',
		'bit_score' => '247',
		'alignment_length' => '203',
		'identity_percentage' => '56.16',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PTI_01G05850' => array(
		'gene_id' => 'PTI_01G05850',
		'e_value' => '7e-80',
		'bit_score' => '245',
		'alignment_length' => '196',
		'identity_percentage' => '56.63',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ES0002G00340' => array(
		'gene_id' => 'ES0002G00340',
		'e_value' => '4e-79',
		'bit_score' => '243',
		'alignment_length' => '197',
		'identity_percentage' => '54.31',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'phs144800' => array(
		'gene_id' => 'phs144800',
		'e_value' => '4e-79',
		'bit_score' => '242',
		'alignment_length' => '198',
		'identity_percentage' => '56.57',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MP04G02430' => array(
		'gene_id' => 'MP04G02430',
		'e_value' => '8e-79',
		'bit_score' => '243',
		'alignment_length' => '213',
		'identity_percentage' => '53.52',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ORCC809_04G03810' => array(
		'gene_id' => 'ORCC809_04G03810',
		'e_value' => '2e-77',
		'bit_score' => '238',
		'alignment_length' => '194',
		'identity_percentage' => '54.64',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G04240' => array(
		'gene_id' => 'CV00G04240',
		'e_value' => '5e-76',
		'bit_score' => '234',
		'alignment_length' => '203',
		'identity_percentage' => '53.20',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MRCC299_08G02540' => array(
		'gene_id' => 'MRCC299_08G02540',
		'e_value' => '5e-76',
		'bit_score' => '235',
		'alignment_length' => '195',
		'identity_percentage' => '54.87',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'DDB_G0271106' => array(
		'gene_id' => 'DDB_G0271106',
		'e_value' => '7e-76',
		'bit_score' => '235',
		'alignment_length' => '200',
		'identity_percentage' => '54.00',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'HE0000G20920' => array(
		'gene_id' => 'HE0000G20920',
		'e_value' => '7e-76',
		'bit_score' => '236',
		'alignment_length' => '188',
		'identity_percentage' => '56.91',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'BPRRCC1105_18G00290' => array(
		'gene_id' => 'BPRRCC1105_18G00290',
		'e_value' => '3e-75',
		'bit_score' => '239',
		'alignment_length' => '190',
		'identity_percentage' => '56.32',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OM_02G01500' => array(
		'gene_id' => 'OM_02G01500',
		'e_value' => '8e-75',
		'bit_score' => '233',
		'alignment_length' => '214',
		'identity_percentage' => '51.40',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CNC64A_004G02130' => array(
		'gene_id' => 'CNC64A_004G02130',
		'e_value' => '4e-73',
		'bit_score' => '227',
		'alignment_length' => '200',
		'identity_percentage' => '52.50',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'gsu127160' => array(
		'gene_id' => 'gsu127160',
		'e_value' => '4e-73',
		'bit_score' => '228',
		'alignment_length' => '215',
		'identity_percentage' => '50.23',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OL04G01390' => array(
		'gene_id' => 'OL04G01390',
		'e_value' => '2e-72',
		'bit_score' => '226',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50430' => array(
		'gene_id' => 'AP00G50430',
		'e_value' => '4e-72',
		'bit_score' => '226',
		'alignment_length' => '218',
		'identity_percentage' => '49.08',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OT_04G01400' => array(
		'gene_id' => 'OT_04G01400',
		'e_value' => '1e-71',
		'bit_score' => '224',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PP00174G00210' => array(
		'gene_id' => 'PP00174G00210',
		'e_value' => '2e-70',
		'bit_score' => '221',
		'alignment_length' => '214',
		'identity_percentage' => '50.47',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G10920' => array(
		'gene_id' => 'AT3G10920',
		'e_value' => '3e-70',
		'bit_score' => '221',
		'alignment_length' => '206',
		'identity_percentage' => '51.46',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AC00G40000' => array(
		'gene_id' => 'AC00G40000',
		'e_value' => '1e-68',
		'bit_score' => '216',
		'alignment_length' => '220',
		'identity_percentage' => '46.82',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50420' => array(
		'gene_id' => 'AP00G50420',
		'e_value' => '4e-66',
		'bit_score' => '211',
		'alignment_length' => '210',
		'identity_percentage' => '47.14',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'OS05G25850' => array(
		'gene_id' => 'OS05G25850',
		'e_value' => '1e-64',
		'bit_score' => '206',
		'alignment_length' => '188',
		'identity_percentage' => '52.66',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'SPAC1486.01' => array(
		'gene_id' => 'SPAC1486.01',
		'e_value' => '5e-60',
		'bit_score' => '194',
		'alignment_length' => '201',
		'identity_percentage' => '49.25',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G56350' => array(
		'gene_id' => 'AT3G56350',
		'e_value' => '4e-59',
		'bit_score' => '192',
		'alignment_length' => '213',
		'identity_percentage' => '44.60',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P199736'
		)
	),
	'CM18G01580' => array(
		'gene_id' => 'CM18G01580',
		'e_value' => '2e-58',
		'bit_score' => '191',
		'alignment_length' => '198',
		'identity_percentage' => '48.99',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'pte226360' => array(
		'gene_id' => 'pte226360',
		'e_value' => '2e-57',
		'bit_score' => '187',
		'alignment_length' => '197',
		'identity_percentage' => '45.18',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ATR_00077G00260' => array(
		'gene_id' => 'ATR_00077G00260',
		'e_value' => '2e-56',
		'bit_score' => '184',
		'alignment_length' => '170',
		'identity_percentage' => '52.94',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G35570' => array(
		'gene_id' => 'CV00G35570',
		'e_value' => '3e-55',
		'bit_score' => '182',
		'alignment_length' => '208',
		'identity_percentage' => '45.19',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'VC00G81010' => array(
		'gene_id' => 'VC00G81010',
		'e_value' => '3e-53',
		'bit_score' => '177',
		'alignment_length' => '209',
		'identity_percentage' => '42.58',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'gsu78240' => array(
		'gene_id' => 'gsu78240',
		'e_value' => '7e-53',
		'bit_score' => '176',
		'alignment_length' => '213',
		'identity_percentage' => '42.72',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CR02G06330' => array(
		'gene_id' => 'CR02G06330',
		'e_value' => '1e-52',
		'bit_score' => '175',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'YHR008C' => array(
		'gene_id' => 'YHR008C',
		'e_value' => '3e-52',
		'bit_score' => '174',
		'alignment_length' => '219',
		'identity_percentage' => '42.47',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'FC006G08770' => array(
		'gene_id' => 'FC006G08770',
		'e_value' => '6e-52',
		'bit_score' => '173',
		'alignment_length' => '213',
		'identity_percentage' => '43.66',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP03G03480' => array(
		'gene_id' => 'TP03G03480',
		'e_value' => '2e-50',
		'bit_score' => '170',
		'alignment_length' => '212',
		'identity_percentage' => '41.98',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AC00G41340' => array(
		'gene_id' => 'AC00G41340',
		'e_value' => '5e-50',
		'bit_score' => '168',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PTI_09G03520' => array(
		'gene_id' => 'PTI_09G03520',
		'e_value' => '8e-49',
		'bit_score' => '167',
		'alignment_length' => '227',
		'identity_percentage' => '38.33',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0091G00170' => array(
		'gene_id' => 'ES0091G00170',
		'e_value' => '1e-48',
		'bit_score' => '167',
		'alignment_length' => '200',
		'identity_percentage' => '43.50',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'emh315300' => array(
		'gene_id' => 'emh315300',
		'e_value' => '3e-48',
		'bit_score' => '165',
		'alignment_length' => '200',
		'identity_percentage' => '43.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CM14G00230' => array(
		'gene_id' => 'CM14G00230',
		'e_value' => '5e-48',
		'bit_score' => '163',
		'alignment_length' => '210',
		'identity_percentage' => '42.86',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G38930' => array(
		'gene_id' => 'PI00G38930',
		'e_value' => '6e-47',
		'bit_score' => '160',
		'alignment_length' => '210',
		'identity_percentage' => '41.43',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'FC006G04690' => array(
		'gene_id' => 'FC006G04690',
		'e_value' => '1e-46',
		'bit_score' => '160',
		'alignment_length' => '208',
		'identity_percentage' => '41.83',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CNC64A_003G01100' => array(
		'gene_id' => 'CNC64A_003G01100',
		'e_value' => '3e-45',
		'bit_score' => '155',
		'alignment_length' => '207',
		'identity_percentage' => '40.58',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'RCC4223.10g01480' => array(
		'gene_id' => 'RCC4223.10g01480',
		'e_value' => '6e-45',
		'bit_score' => '155',
		'alignment_length' => '210',
		'identity_percentage' => '40.95',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AA0013G02190' => array(
		'gene_id' => 'AA0013G02190',
		'e_value' => '2e-44',
		'bit_score' => '154',
		'alignment_length' => '203',
		'identity_percentage' => '44.33',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CV00G39720' => array(
		'gene_id' => 'CV00G39720',
		'e_value' => '3e-44',
		'bit_score' => '154',
		'alignment_length' => '216',
		'identity_percentage' => '39.35',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092266'
		)
	),
	'ccr48440' => array(
		'gene_id' => 'ccr48440',
		'e_value' => '2e-42',
		'bit_score' => '151',
		'alignment_length' => '232',
		'identity_percentage' => '37.50',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.09g02580' => array(
		'gene_id' => 'RCC4223.09g02580',
		'e_value' => '1e-41',
		'bit_score' => '147',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ccr175720' => array(
		'gene_id' => 'ccr175720',
		'e_value' => '3e-41',
		'bit_score' => '145',
		'alignment_length' => '209',
		'identity_percentage' => '38.28',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G45530' => array(
		'gene_id' => 'PI00G45530',
		'e_value' => '7e-40',
		'bit_score' => '142',
		'alignment_length' => '207',
		'identity_percentage' => '37.68',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CV00G40850' => array(
		'gene_id' => 'CV00G40850',
		'e_value' => '6e-38',
		'bit_score' => '138',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092263'
		)
	),
	'CV00G29940' => array(
		'gene_id' => 'CV00G29940',
		'e_value' => '6e-38',
		'bit_score' => '136',
		'alignment_length' => '204',
		'identity_percentage' => '38.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ES0201G00270' => array(
		'gene_id' => 'ES0201G00270',
		'e_value' => '4e-37',
		'bit_score' => '134',
		'alignment_length' => '186',
		'identity_percentage' => '38.17',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G60650' => array(
		'gene_id' => 'AC00G60650',
		'e_value' => '2e-36',
		'bit_score' => '134',
		'alignment_length' => '216',
		'identity_percentage' => '36.57',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'CM20G00280' => array(
		'gene_id' => 'CM20G00280',
		'e_value' => '4e-36',
		'bit_score' => '135',
		'alignment_length' => '205',
		'identity_percentage' => '40.98',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P125267'
		)
	),
	'Naga_100558g2' => array(
		'gene_id' => 'Naga_100558g2',
		'e_value' => '4e-36',
		'bit_score' => '131',
		'alignment_length' => '196',
		'identity_percentage' => '37.76',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0421G00040' => array(
		'gene_id' => 'ES0421G00040',
		'e_value' => '7e-36',
		'bit_score' => '132',
		'alignment_length' => '189',
		'identity_percentage' => '39.15',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'ES0219G00060' => array(
		'gene_id' => 'ES0219G00060',
		'e_value' => '1e-35',
		'bit_score' => '131',
		'alignment_length' => '188',
		'identity_percentage' => '38.30',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'CV00G88020' => array(
		'gene_id' => 'CV00G88020',
		'e_value' => '2e-34',
		'bit_score' => '130',
		'alignment_length' => '201',
		'identity_percentage' => '38.31',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P104180'
		)
	),
	'CR12G01760' => array(
		'gene_id' => 'CR12G01760',
		'e_value' => '3e-33',
		'bit_score' => '126',
		'alignment_length' => '217',
		'identity_percentage' => '37.79',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CR10G04050' => array(
		'gene_id' => 'CR10G04050',
		'e_value' => '8e-33',
		'bit_score' => '124',
		'alignment_length' => '220',
		'identity_percentage' => '34.09',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G37390' => array(
		'gene_id' => 'AP00G37390',
		'e_value' => '2e-32',
		'bit_score' => '121',
		'alignment_length' => '206',
		'identity_percentage' => '35.44',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CNC64A_002G04590' => array(
		'gene_id' => 'CNC64A_002G04590',
		'e_value' => '3e-32',
		'bit_score' => '122',
		'alignment_length' => '210',
		'identity_percentage' => '36.19',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00002G02230' => array(
		'gene_id' => 'PP00002G02230',
		'e_value' => '4e-32',
		'bit_score' => '123',
		'alignment_length' => '214',
		'identity_percentage' => '36.92',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PI00G57020' => array(
		'gene_id' => 'PI00G57020',
		'e_value' => '8e-31',
		'bit_score' => '117',
		'alignment_length' => '190',
		'identity_percentage' => '39.47',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P095062'
		)
	),
	'CNC64A_053G00030' => array(
		'gene_id' => 'CNC64A_053G00030',
		'e_value' => '3e-30',
		'bit_score' => '113',
		'alignment_length' => '79',
		'identity_percentage' => '56.96',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P171617'
		)
	),
	'AC00G60420' => array(
		'gene_id' => 'AC00G60420',
		'e_value' => '1e-29',
		'bit_score' => '115',
		'alignment_length' => '210',
		'identity_percentage' => '36.67',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'Naga_100051g29' => array(
		'gene_id' => 'Naga_100051g29',
		'e_value' => '2e-29',
		'bit_score' => '115',
		'alignment_length' => '203',
		'identity_percentage' => '33.50',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11410' => array(
		'gene_id' => 'AC00G11410',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11400' => array(
		'gene_id' => 'AC00G11400',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105360' => array(
		'gene_id' => 'VC00G105360',
		'e_value' => '7e-29',
		'bit_score' => '114',
		'alignment_length' => '221',
		'identity_percentage' => '34.39',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P151582'
		)
	),
	'VC00G23690' => array(
		'gene_id' => 'VC00G23690',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '248',
		'identity_percentage' => '31.45',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'CR17G01600' => array(
		'gene_id' => 'CR17G01600',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '215',
		'identity_percentage' => '36.28',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P133541'
		)
	),
	'VC00G105340' => array(
		'gene_id' => 'VC00G105340',
		'e_value' => '6e-28',
		'bit_score' => '111',
		'alignment_length' => '190',
		'identity_percentage' => '35.26',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'TP07G00620' => array(
		'gene_id' => 'TP07G00620',
		'e_value' => '1e-27',
		'bit_score' => '110',
		'alignment_length' => '194',
		'identity_percentage' => '34.54',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ATR_00044G00090' => array(
		'gene_id' => 'ATR_00044G00090',
		'e_value' => '2e-27',
		'bit_score' => '110',
		'alignment_length' => '219',
		'identity_percentage' => '32.88',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105370' => array(
		'gene_id' => 'VC00G105370',
		'e_value' => '6e-27',
		'bit_score' => '108',
		'alignment_length' => '216',
		'identity_percentage' => '32.41',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P188832'
		)
	),
	'OS06G05110' => array(
		'gene_id' => 'OS06G05110',
		'e_value' => '2e-26',
		'bit_score' => '107',
		'alignment_length' => '216',
		'identity_percentage' => '31.94',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT4G25100' => array(
		'gene_id' => 'AT4G25100',
		'e_value' => '8e-26',
		'bit_score' => '105',
		'alignment_length' => '216',
		'identity_percentage' => '33.33',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CR16G10150' => array(
		'gene_id' => 'CR16G10150',
		'e_value' => '1e-25',
		'bit_score' => '105',
		'alignment_length' => '232',
		'identity_percentage' => '31.47',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'AT5G51100' => array(
		'gene_id' => 'AT5G51100',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '216',
		'identity_percentage' => '31.02',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G117070' => array(
		'gene_id' => 'VC00G117070',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '252',
		'identity_percentage' => '30.16',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CNC64A_003G01110' => array(
		'gene_id' => 'CNC64A_003G01110',
		'e_value' => '3e-24',
		'bit_score' => '100',
		'alignment_length' => '204',
		'identity_percentage' => '33.82',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P120410'
		)
	),
	'pte87360' => array(
		'gene_id' => 'pte87360',
		'e_value' => '1e-23',
		'bit_score' => '99.0',
		'alignment_length' => '190',
		'identity_percentage' => '34.74',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00022G01800' => array(
		'gene_id' => 'PP00022G01800',
		'e_value' => '2e-23',
		'bit_score' => '99.4',
		'alignment_length' => '209',
		'identity_percentage' => '34.45',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT5G23310' => array(
		'gene_id' => 'AT5G23310',
		'e_value' => '2e-23',
		'bit_score' => '99.8',
		'alignment_length' => '212',
		'identity_percentage' => '30.66',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07700' => array(
		'gene_id' => 'AP00G07700',
		'e_value' => '4e-23',
		'bit_score' => '95.9',
		'alignment_length' => '119',
		'identity_percentage' => '42.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ATR_00002G00850' => array(
		'gene_id' => 'ATR_00002G00850',
		'e_value' => '8e-23',
		'bit_score' => '97.8',
		'alignment_length' => '233',
		'identity_percentage' => '32.62',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'pte256500' => array(
		'gene_id' => 'pte256500',
		'e_value' => '1e-19',
		'bit_score' => '87.0',
		'alignment_length' => '143',
		'identity_percentage' => '37.06',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P111717'
		)
	),
	'emh596200' => array(
		'gene_id' => 'emh596200',
		'e_value' => '2e-19',
		'bit_score' => '85.5',
		'alignment_length' => '97',
		'identity_percentage' => '38.14',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P124956'
		)
	),
	'OS06G02500' => array(
		'gene_id' => 'OS06G02500',
		'e_value' => '2e-15',
		'bit_score' => '77.8',
		'alignment_length' => '213',
		'identity_percentage' => '28.17',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07690' => array(
		'gene_id' => 'AP00G07690',
		'e_value' => '5e-15',
		'bit_score' => '72.4',
		'alignment_length' => '86',
		'identity_percentage' => '43.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P162479'
		)
	),
	'HE0000G44530' => array(
		'gene_id' => 'HE0000G44530',
		'e_value' => '2e-14',
		'bit_score' => '69.7',
		'alignment_length' => '56',
		'identity_percentage' => '57.14',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P174303'
		)
	),
	'CNC64A_053G00010' => array(
		'gene_id' => 'CNC64A_053G00010',
		'e_value' => '2e-13',
		'bit_score' => '67.4',
		'alignment_length' => '53',
		'identity_percentage' => '58.49',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P190791'
		)
	),
	'SPBC3H7.04' => array(
		'gene_id' => 'SPBC3H7.04',
		'e_value' => '3e-10',
		'bit_score' => '61.2',
		'alignment_length' => '141',
		'identity_percentage' => '26.24',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P119626'
		)
	)
)
$similarity_hits_species = array(
	'drm' => array(
		(int) 0 => 'FBgn0010213'
	),
	'cel' => array(
		(int) 0 => 'WBGene00004931',
		(int) 1 => 'WBGene00004932'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000006818'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000112096'
	),
	'aan' => array(
		(int) 0 => 'AA0011G02290',
		(int) 1 => 'AA0013G02190'
	),
	'cre' => array(
		(int) 0 => 'CR13G07570',
		(int) 1 => 'CR02G06330',
		(int) 2 => 'CR12G01760',
		(int) 3 => 'CR10G04050',
		(int) 4 => 'CR17G01600',
		(int) 5 => 'CR16G10150'
	),
	'tps' => array(
		(int) 0 => 'TP05G03430',
		(int) 1 => 'TP03G03480',
		(int) 2 => 'TP07G00620'
	),
	'vca' => array(
		(int) 0 => 'VC00G133110',
		(int) 1 => 'VC00G81010',
		(int) 2 => 'VC00G105360',
		(int) 3 => 'VC00G23690',
		(int) 4 => 'VC00G105340',
		(int) 5 => 'VC00G105370',
		(int) 6 => 'VC00G117070'
	),
	'pse3' => array(
		(int) 0 => 'PI00G17260',
		(int) 1 => 'PI00G38930',
		(int) 2 => 'PI00G45530',
		(int) 3 => 'PI00G57020'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.13g02410',
		(int) 1 => 'RCC4223.10g01480',
		(int) 2 => 'RCC4223.09g02580'
	),
	'ptri' => array(
		(int) 0 => 'PTI_01G05850',
		(int) 1 => 'PTI_09G03520'
	),
	'esi' => array(
		(int) 0 => 'ES0002G00340',
		(int) 1 => 'ES0091G00170',
		(int) 2 => 'ES0201G00270',
		(int) 3 => 'ES0421G00040',
		(int) 4 => 'ES0219G00060'
	),
	'phs' => array(
		(int) 0 => 'phs144800'
	),
	'mpu' => array(
		(int) 0 => 'MP04G02430'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_04G03810'
	),
	'cvu' => array(
		(int) 0 => 'CV00G04240',
		(int) 1 => 'CV00G35570',
		(int) 2 => 'CV00G39720',
		(int) 3 => 'CV00G40850',
		(int) 4 => 'CV00G29940',
		(int) 5 => 'CV00G88020'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_08G02540'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0271106'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G20920',
		(int) 1 => 'HE0000G44530'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_18G00290'
	),
	'ome' => array(
		(int) 0 => 'OM_02G01500'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_004G02130',
		(int) 1 => 'CNC64A_003G01100',
		(int) 2 => 'CNC64A_002G04590',
		(int) 3 => 'CNC64A_003G01110'
	),
	'gsu' => array(
		(int) 0 => 'gsu127160',
		(int) 1 => 'gsu78240'
	),
	'olu' => array(
		(int) 0 => 'OL04G01390'
	),
	'apr' => array(
		(int) 0 => 'AP00G50430',
		(int) 1 => 'AP00G50420',
		(int) 2 => 'AP00G37390',
		(int) 3 => 'AP00G07700',
		(int) 4 => 'AP00G07690'
	),
	'ota' => array(
		(int) 0 => 'OT_04G01400'
	),
	'ppa' => array(
		(int) 0 => 'PP00174G00210',
		(int) 1 => 'PP00002G02230',
		(int) 2 => 'PP00022G01800'
	),
	'ath' => array(
		(int) 0 => 'AT3G10920',
		(int) 1 => 'AT3G56350',
		(int) 2 => 'AT4G25100',
		(int) 3 => 'AT5G51100',
		(int) 4 => 'AT5G23310'
	),
	'acg' => array(
		(int) 0 => 'AC00G40000',
		(int) 1 => 'AC00G41340',
		(int) 2 => 'AC00G60650',
		(int) 3 => 'AC00G60420',
		(int) 4 => 'AC00G11410',
		(int) 5 => 'AC00G11400'
	),
	'osa' => array(
		(int) 0 => 'OS05G25850',
		(int) 1 => 'OS06G05110',
		(int) 2 => 'OS06G02500'
	),
	'scp' => array(
		(int) 0 => 'SPAC1486.01',
		(int) 1 => 'SPBC3H7.04'
	),
	'cme' => array(
		(int) 0 => 'CM18G01580',
		(int) 1 => 'CM14G00230',
		(int) 2 => 'CM20G00280'
	),
	'pte' => array(
		(int) 0 => 'pte226360',
		(int) 1 => 'pte87360',
		(int) 2 => 'pte256500'
	),
	'atr' => array(
		(int) 0 => 'ATR_00077G00260',
		(int) 1 => 'ATR_00044G00090',
		(int) 2 => 'ATR_00002G00850'
	),
	'sac' => array(
		(int) 0 => 'YHR008C'
	),
	'fcy' => array(
		(int) 0 => 'FC006G08770',
		(int) 1 => 'FC006G04690'
	),
	'emh' => array(
		(int) 0 => 'emh315300',
		(int) 1 => 'emh596200'
	),
	'ccr' => array(
		(int) 0 => 'ccr48440',
		(int) 1 => 'ccr175720'
	),
	'nga' => array(
		(int) 0 => 'Naga_100558g2',
		(int) 1 => 'Naga_100051g29'
	)
)
$gene_id = 'FBgn0010213'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'FBgn0010213'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'AP00G16600'
$gf_placeholder = 'HOM03P014805'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_053G00010',
	'e_value' => '2e-13',
	'bit_score' => '67.4',
	'alignment_length' => '53',
	'identity_percentage' => '58.49',
	'gf' => array(
		'HOMFAM' => 'HOM03P000403',
		'ORTHOFAM' => 'ORTHO03P190791'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'FBgn0010213' => array(
			'gene_id' => 'FBgn0010213',
			'e_value' => '7e-162',
			'bit_score' => '453',
			'alignment_length' => '218',
			'identity_percentage' => '100.00',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004931' => array(
			'gene_id' => 'WBGene00004931',
			'e_value' => '5e-94',
			'bit_score' => '281',
			'alignment_length' => '205',
			'identity_percentage' => '63.90',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000006818' => array(
			'gene_id' => 'ENSMUSG00000006818',
			'e_value' => '3e-92',
			'bit_score' => '276',
			'alignment_length' => '214',
			'identity_percentage' => '59.81',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000112096' => array(
			'gene_id' => 'ENSG00000112096',
			'e_value' => '4e-92',
			'bit_score' => '276',
			'alignment_length' => '203',
			'identity_percentage' => '62.07',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0011G02290' => array(
			'gene_id' => 'AA0011G02290',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '216',
			'identity_percentage' => '56.02',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00004932' => array(
			'gene_id' => 'WBGene00004932',
			'e_value' => '2e-90',
			'bit_score' => '272',
			'alignment_length' => '214',
			'identity_percentage' => '60.75',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR13G07570' => array(
			'gene_id' => 'CR13G07570',
			'e_value' => '4e-85',
			'bit_score' => '258',
			'alignment_length' => '196',
			'identity_percentage' => '62.24',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP05G03430' => array(
			'gene_id' => 'TP05G03430',
			'e_value' => '6e-85',
			'bit_score' => '259',
			'alignment_length' => '200',
			'identity_percentage' => '57.50',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G133110' => array(
			'gene_id' => 'VC00G133110',
			'e_value' => '1e-83',
			'bit_score' => '255',
			'alignment_length' => '196',
			'identity_percentage' => '60.20',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G17260' => array(
			'gene_id' => 'PI00G17260',
			'e_value' => '8e-81',
			'bit_score' => '248',
			'alignment_length' => '199',
			'identity_percentage' => '57.29',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.13g02410' => array(
			'gene_id' => 'RCC4223.13g02410',
			'e_value' => '2e-80',
			'bit_score' => '247',
			'alignment_length' => '203',
			'identity_percentage' => '56.16',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_01G05850' => array(
			'gene_id' => 'PTI_01G05850',
			'e_value' => '7e-80',
			'bit_score' => '245',
			'alignment_length' => '196',
			'identity_percentage' => '56.63',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0002G00340' => array(
			'gene_id' => 'ES0002G00340',
			'e_value' => '4e-79',
			'bit_score' => '243',
			'alignment_length' => '197',
			'identity_percentage' => '54.31',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs144800' => array(
			'gene_id' => 'phs144800',
			'e_value' => '4e-79',
			'bit_score' => '242',
			'alignment_length' => '198',
			'identity_percentage' => '56.57',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP04G02430' => array(
			'gene_id' => 'MP04G02430',
			'e_value' => '8e-79',
			'bit_score' => '243',
			'alignment_length' => '213',
			'identity_percentage' => '53.52',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_04G03810' => array(
			'gene_id' => 'ORCC809_04G03810',
			'e_value' => '2e-77',
			'bit_score' => '238',
			'alignment_length' => '194',
			'identity_percentage' => '54.64',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G04240' => array(
			'gene_id' => 'CV00G04240',
			'e_value' => '5e-76',
			'bit_score' => '234',
			'alignment_length' => '203',
			'identity_percentage' => '53.20',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_08G02540' => array(
			'gene_id' => 'MRCC299_08G02540',
			'e_value' => '5e-76',
			'bit_score' => '235',
			'alignment_length' => '195',
			'identity_percentage' => '54.87',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0271106' => array(
			'gene_id' => 'DDB_G0271106',
			'e_value' => '7e-76',
			'bit_score' => '235',
			'alignment_length' => '200',
			'identity_percentage' => '54.00',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G20920' => array(
			'gene_id' => 'HE0000G20920',
			'e_value' => '7e-76',
			'bit_score' => '236',
			'alignment_length' => '188',
			'identity_percentage' => '56.91',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_18G00290' => array(
			'gene_id' => 'BPRRCC1105_18G00290',
			'e_value' => '3e-75',
			'bit_score' => '239',
			'alignment_length' => '190',
			'identity_percentage' => '56.32',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_02G01500' => array(
			'gene_id' => 'OM_02G01500',
			'e_value' => '8e-75',
			'bit_score' => '233',
			'alignment_length' => '214',
			'identity_percentage' => '51.40',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_004G02130' => array(
			'gene_id' => 'CNC64A_004G02130',
			'e_value' => '4e-73',
			'bit_score' => '227',
			'alignment_length' => '200',
			'identity_percentage' => '52.50',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu127160' => array(
			'gene_id' => 'gsu127160',
			'e_value' => '4e-73',
			'bit_score' => '228',
			'alignment_length' => '215',
			'identity_percentage' => '50.23',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL04G01390' => array(
			'gene_id' => 'OL04G01390',
			'e_value' => '2e-72',
			'bit_score' => '226',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50430' => array(
			'gene_id' => 'AP00G50430',
			'e_value' => '4e-72',
			'bit_score' => '226',
			'alignment_length' => '218',
			'identity_percentage' => '49.08',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_04G01400' => array(
			'gene_id' => 'OT_04G01400',
			'e_value' => '1e-71',
			'bit_score' => '224',
			'alignment_length' => '194',
			'identity_percentage' => '52.58',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00174G00210' => array(
			'gene_id' => 'PP00174G00210',
			'e_value' => '2e-70',
			'bit_score' => '221',
			'alignment_length' => '214',
			'identity_percentage' => '50.47',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G10920' => array(
			'gene_id' => 'AT3G10920',
			'e_value' => '3e-70',
			'bit_score' => '221',
			'alignment_length' => '206',
			'identity_percentage' => '51.46',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G40000' => array(
			'gene_id' => 'AC00G40000',
			'e_value' => '1e-68',
			'bit_score' => '216',
			'alignment_length' => '220',
			'identity_percentage' => '46.82',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G50420' => array(
			'gene_id' => 'AP00G50420',
			'e_value' => '4e-66',
			'bit_score' => '211',
			'alignment_length' => '210',
			'identity_percentage' => '47.14',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS05G25850' => array(
			'gene_id' => 'OS05G25850',
			'e_value' => '1e-64',
			'bit_score' => '206',
			'alignment_length' => '188',
			'identity_percentage' => '52.66',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1486.01' => array(
			'gene_id' => 'SPAC1486.01',
			'e_value' => '5e-60',
			'bit_score' => '194',
			'alignment_length' => '201',
			'identity_percentage' => '49.25',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G56350' => array(
			'gene_id' => 'AT3G56350',
			'e_value' => '4e-59',
			'bit_score' => '192',
			'alignment_length' => '213',
			'identity_percentage' => '44.60',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM18G01580' => array(
			'gene_id' => 'CM18G01580',
			'e_value' => '2e-58',
			'bit_score' => '191',
			'alignment_length' => '198',
			'identity_percentage' => '48.99',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte226360' => array(
			'gene_id' => 'pte226360',
			'e_value' => '2e-57',
			'bit_score' => '187',
			'alignment_length' => '197',
			'identity_percentage' => '45.18',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00077G00260' => array(
			'gene_id' => 'ATR_00077G00260',
			'e_value' => '2e-56',
			'bit_score' => '184',
			'alignment_length' => '170',
			'identity_percentage' => '52.94',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G35570' => array(
			'gene_id' => 'CV00G35570',
			'e_value' => '3e-55',
			'bit_score' => '182',
			'alignment_length' => '208',
			'identity_percentage' => '45.19',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G81010' => array(
			'gene_id' => 'VC00G81010',
			'e_value' => '3e-53',
			'bit_score' => '177',
			'alignment_length' => '209',
			'identity_percentage' => '42.58',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu78240' => array(
			'gene_id' => 'gsu78240',
			'e_value' => '7e-53',
			'bit_score' => '176',
			'alignment_length' => '213',
			'identity_percentage' => '42.72',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR02G06330' => array(
			'gene_id' => 'CR02G06330',
			'e_value' => '1e-52',
			'bit_score' => '175',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YHR008C' => array(
			'gene_id' => 'YHR008C',
			'e_value' => '3e-52',
			'bit_score' => '174',
			'alignment_length' => '219',
			'identity_percentage' => '42.47',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G08770' => array(
			'gene_id' => 'FC006G08770',
			'e_value' => '6e-52',
			'bit_score' => '173',
			'alignment_length' => '213',
			'identity_percentage' => '43.66',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP03G03480' => array(
			'gene_id' => 'TP03G03480',
			'e_value' => '2e-50',
			'bit_score' => '170',
			'alignment_length' => '212',
			'identity_percentage' => '41.98',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G41340' => array(
			'gene_id' => 'AC00G41340',
			'e_value' => '5e-50',
			'bit_score' => '168',
			'alignment_length' => '209',
			'identity_percentage' => '43.06',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_09G03520' => array(
			'gene_id' => 'PTI_09G03520',
			'e_value' => '8e-49',
			'bit_score' => '167',
			'alignment_length' => '227',
			'identity_percentage' => '38.33',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0091G00170' => array(
			'gene_id' => 'ES0091G00170',
			'e_value' => '1e-48',
			'bit_score' => '167',
			'alignment_length' => '200',
			'identity_percentage' => '43.50',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh315300' => array(
			'gene_id' => 'emh315300',
			'e_value' => '3e-48',
			'bit_score' => '165',
			'alignment_length' => '200',
			'identity_percentage' => '43.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM14G00230' => array(
			'gene_id' => 'CM14G00230',
			'e_value' => '5e-48',
			'bit_score' => '163',
			'alignment_length' => '210',
			'identity_percentage' => '42.86',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G38930' => array(
			'gene_id' => 'PI00G38930',
			'e_value' => '6e-47',
			'bit_score' => '160',
			'alignment_length' => '210',
			'identity_percentage' => '41.43',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC006G04690' => array(
			'gene_id' => 'FC006G04690',
			'e_value' => '1e-46',
			'bit_score' => '160',
			'alignment_length' => '208',
			'identity_percentage' => '41.83',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01100' => array(
			'gene_id' => 'CNC64A_003G01100',
			'e_value' => '3e-45',
			'bit_score' => '155',
			'alignment_length' => '207',
			'identity_percentage' => '40.58',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01480' => array(
			'gene_id' => 'RCC4223.10g01480',
			'e_value' => '6e-45',
			'bit_score' => '155',
			'alignment_length' => '210',
			'identity_percentage' => '40.95',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0013G02190' => array(
			'gene_id' => 'AA0013G02190',
			'e_value' => '2e-44',
			'bit_score' => '154',
			'alignment_length' => '203',
			'identity_percentage' => '44.33',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G39720' => array(
			'gene_id' => 'CV00G39720',
			'e_value' => '3e-44',
			'bit_score' => '154',
			'alignment_length' => '216',
			'identity_percentage' => '39.35',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr48440' => array(
			'gene_id' => 'ccr48440',
			'e_value' => '2e-42',
			'bit_score' => '151',
			'alignment_length' => '232',
			'identity_percentage' => '37.50',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.09g02580' => array(
			'gene_id' => 'RCC4223.09g02580',
			'e_value' => '1e-41',
			'bit_score' => '147',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr175720' => array(
			'gene_id' => 'ccr175720',
			'e_value' => '3e-41',
			'bit_score' => '145',
			'alignment_length' => '209',
			'identity_percentage' => '38.28',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G45530' => array(
			'gene_id' => 'PI00G45530',
			'e_value' => '7e-40',
			'bit_score' => '142',
			'alignment_length' => '207',
			'identity_percentage' => '37.68',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G40850' => array(
			'gene_id' => 'CV00G40850',
			'e_value' => '6e-38',
			'bit_score' => '138',
			'alignment_length' => '215',
			'identity_percentage' => '37.67',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G29940' => array(
			'gene_id' => 'CV00G29940',
			'e_value' => '6e-38',
			'bit_score' => '136',
			'alignment_length' => '204',
			'identity_percentage' => '38.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0201G00270' => array(
			'gene_id' => 'ES0201G00270',
			'e_value' => '4e-37',
			'bit_score' => '134',
			'alignment_length' => '186',
			'identity_percentage' => '38.17',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60650' => array(
			'gene_id' => 'AC00G60650',
			'e_value' => '2e-36',
			'bit_score' => '134',
			'alignment_length' => '216',
			'identity_percentage' => '36.57',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM20G00280' => array(
			'gene_id' => 'CM20G00280',
			'e_value' => '4e-36',
			'bit_score' => '135',
			'alignment_length' => '205',
			'identity_percentage' => '40.98',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100558g2' => array(
			'gene_id' => 'Naga_100558g2',
			'e_value' => '4e-36',
			'bit_score' => '131',
			'alignment_length' => '196',
			'identity_percentage' => '37.76',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0421G00040' => array(
			'gene_id' => 'ES0421G00040',
			'e_value' => '7e-36',
			'bit_score' => '132',
			'alignment_length' => '189',
			'identity_percentage' => '39.15',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0219G00060' => array(
			'gene_id' => 'ES0219G00060',
			'e_value' => '1e-35',
			'bit_score' => '131',
			'alignment_length' => '188',
			'identity_percentage' => '38.30',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G88020' => array(
			'gene_id' => 'CV00G88020',
			'e_value' => '2e-34',
			'bit_score' => '130',
			'alignment_length' => '201',
			'identity_percentage' => '38.31',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G01760' => array(
			'gene_id' => 'CR12G01760',
			'e_value' => '3e-33',
			'bit_score' => '126',
			'alignment_length' => '217',
			'identity_percentage' => '37.79',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR10G04050' => array(
			'gene_id' => 'CR10G04050',
			'e_value' => '8e-33',
			'bit_score' => '124',
			'alignment_length' => '220',
			'identity_percentage' => '34.09',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G37390' => array(
			'gene_id' => 'AP00G37390',
			'e_value' => '2e-32',
			'bit_score' => '121',
			'alignment_length' => '206',
			'identity_percentage' => '35.44',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_002G04590' => array(
			'gene_id' => 'CNC64A_002G04590',
			'e_value' => '3e-32',
			'bit_score' => '122',
			'alignment_length' => '210',
			'identity_percentage' => '36.19',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00002G02230' => array(
			'gene_id' => 'PP00002G02230',
			'e_value' => '4e-32',
			'bit_score' => '123',
			'alignment_length' => '214',
			'identity_percentage' => '36.92',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G57020' => array(
			'gene_id' => 'PI00G57020',
			'e_value' => '8e-31',
			'bit_score' => '117',
			'alignment_length' => '190',
			'identity_percentage' => '39.47',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00030' => array(
			'gene_id' => 'CNC64A_053G00030',
			'e_value' => '3e-30',
			'bit_score' => '113',
			'alignment_length' => '79',
			'identity_percentage' => '56.96',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G60420' => array(
			'gene_id' => 'AC00G60420',
			'e_value' => '1e-29',
			'bit_score' => '115',
			'alignment_length' => '210',
			'identity_percentage' => '36.67',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100051g29' => array(
			'gene_id' => 'Naga_100051g29',
			'e_value' => '2e-29',
			'bit_score' => '115',
			'alignment_length' => '203',
			'identity_percentage' => '33.50',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11410' => array(
			'gene_id' => 'AC00G11410',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11400' => array(
			'gene_id' => 'AC00G11400',
			'e_value' => '2e-29',
			'bit_score' => '120',
			'alignment_length' => '205',
			'identity_percentage' => '37.07',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105360' => array(
			'gene_id' => 'VC00G105360',
			'e_value' => '7e-29',
			'bit_score' => '114',
			'alignment_length' => '221',
			'identity_percentage' => '34.39',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G23690' => array(
			'gene_id' => 'VC00G23690',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '248',
			'identity_percentage' => '31.45',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR17G01600' => array(
			'gene_id' => 'CR17G01600',
			'e_value' => '3e-28',
			'bit_score' => '113',
			'alignment_length' => '215',
			'identity_percentage' => '36.28',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105340' => array(
			'gene_id' => 'VC00G105340',
			'e_value' => '6e-28',
			'bit_score' => '111',
			'alignment_length' => '190',
			'identity_percentage' => '35.26',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP07G00620' => array(
			'gene_id' => 'TP07G00620',
			'e_value' => '1e-27',
			'bit_score' => '110',
			'alignment_length' => '194',
			'identity_percentage' => '34.54',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00044G00090' => array(
			'gene_id' => 'ATR_00044G00090',
			'e_value' => '2e-27',
			'bit_score' => '110',
			'alignment_length' => '219',
			'identity_percentage' => '32.88',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105370' => array(
			'gene_id' => 'VC00G105370',
			'e_value' => '6e-27',
			'bit_score' => '108',
			'alignment_length' => '216',
			'identity_percentage' => '32.41',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G05110' => array(
			'gene_id' => 'OS06G05110',
			'e_value' => '2e-26',
			'bit_score' => '107',
			'alignment_length' => '216',
			'identity_percentage' => '31.94',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G25100' => array(
			'gene_id' => 'AT4G25100',
			'e_value' => '8e-26',
			'bit_score' => '105',
			'alignment_length' => '216',
			'identity_percentage' => '33.33',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR16G10150' => array(
			'gene_id' => 'CR16G10150',
			'e_value' => '1e-25',
			'bit_score' => '105',
			'alignment_length' => '232',
			'identity_percentage' => '31.47',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G51100' => array(
			'gene_id' => 'AT5G51100',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '216',
			'identity_percentage' => '31.02',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G117070' => array(
			'gene_id' => 'VC00G117070',
			'e_value' => '1e-24',
			'bit_score' => '103',
			'alignment_length' => '252',
			'identity_percentage' => '30.16',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_003G01110' => array(
			'gene_id' => 'CNC64A_003G01110',
			'e_value' => '3e-24',
			'bit_score' => '100',
			'alignment_length' => '204',
			'identity_percentage' => '33.82',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte87360' => array(
			'gene_id' => 'pte87360',
			'e_value' => '1e-23',
			'bit_score' => '99.0',
			'alignment_length' => '190',
			'identity_percentage' => '34.74',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00022G01800' => array(
			'gene_id' => 'PP00022G01800',
			'e_value' => '2e-23',
			'bit_score' => '99.4',
			'alignment_length' => '209',
			'identity_percentage' => '34.45',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G23310' => array(
			'gene_id' => 'AT5G23310',
			'e_value' => '2e-23',
			'bit_score' => '99.8',
			'alignment_length' => '212',
			'identity_percentage' => '30.66',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07700' => array(
			'gene_id' => 'AP00G07700',
			'e_value' => '4e-23',
			'bit_score' => '95.9',
			'alignment_length' => '119',
			'identity_percentage' => '42.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G00850' => array(
			'gene_id' => 'ATR_00002G00850',
			'e_value' => '8e-23',
			'bit_score' => '97.8',
			'alignment_length' => '233',
			'identity_percentage' => '32.62',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte256500' => array(
			'gene_id' => 'pte256500',
			'e_value' => '1e-19',
			'bit_score' => '87.0',
			'alignment_length' => '143',
			'identity_percentage' => '37.06',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh596200' => array(
			'gene_id' => 'emh596200',
			'e_value' => '2e-19',
			'bit_score' => '85.5',
			'alignment_length' => '97',
			'identity_percentage' => '38.14',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G02500' => array(
			'gene_id' => 'OS06G02500',
			'e_value' => '2e-15',
			'bit_score' => '77.8',
			'alignment_length' => '213',
			'identity_percentage' => '28.17',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07690' => array(
			'gene_id' => 'AP00G07690',
			'e_value' => '5e-15',
			'bit_score' => '72.4',
			'alignment_length' => '86',
			'identity_percentage' => '43.02',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G44530' => array(
			'gene_id' => 'HE0000G44530',
			'e_value' => '2e-14',
			'bit_score' => '69.7',
			'alignment_length' => '56',
			'identity_percentage' => '57.14',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_053G00010' => array(
			'gene_id' => 'CNC64A_053G00010',
			'e_value' => '2e-13',
			'bit_score' => '67.4',
			'alignment_length' => '53',
			'identity_percentage' => '58.49',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC3H7.04' => array(
			'gene_id' => 'SPBC3H7.04',
			'e_value' => '3e-10',
			'bit_score' => '61.2',
			'alignment_length' => '141',
			'identity_percentage' => '26.24',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'drm' => array(
			(int) 0 => 'FBgn0010213'
		),
		'cel' => array(
			(int) 0 => 'WBGene00004931',
			(int) 1 => 'WBGene00004932'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000006818'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000112096'
		),
		'aan' => array(
			(int) 0 => 'AA0011G02290',
			(int) 1 => 'AA0013G02190'
		),
		'cre' => array(
			(int) 0 => 'CR13G07570',
			(int) 1 => 'CR02G06330',
			(int) 2 => 'CR12G01760',
			(int) 3 => 'CR10G04050',
			(int) 4 => 'CR17G01600',
			(int) 5 => 'CR16G10150'
		),
		'tps' => array(
			(int) 0 => 'TP05G03430',
			(int) 1 => 'TP03G03480',
			(int) 2 => 'TP07G00620'
		),
		'vca' => array(
			(int) 0 => 'VC00G133110',
			(int) 1 => 'VC00G81010',
			(int) 2 => 'VC00G105360',
			(int) 3 => 'VC00G23690',
			(int) 4 => 'VC00G105340',
			(int) 5 => 'VC00G105370',
			(int) 6 => 'VC00G117070'
		),
		'pse3' => array(
			(int) 0 => 'PI00G17260',
			(int) 1 => 'PI00G38930',
			(int) 2 => 'PI00G45530',
			(int) 3 => 'PI00G57020'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.13g02410',
			(int) 1 => 'RCC4223.10g01480',
			(int) 2 => 'RCC4223.09g02580'
		),
		'ptri' => array(
			(int) 0 => 'PTI_01G05850',
			(int) 1 => 'PTI_09G03520'
		),
		'esi' => array(
			(int) 0 => 'ES0002G00340',
			(int) 1 => 'ES0091G00170',
			(int) 2 => 'ES0201G00270',
			(int) 3 => 'ES0421G00040',
			(int) 4 => 'ES0219G00060'
		),
		'phs' => array(
			(int) 0 => 'phs144800'
		),
		'mpu' => array(
			(int) 0 => 'MP04G02430'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_04G03810'
		),
		'cvu' => array(
			(int) 0 => 'CV00G04240',
			(int) 1 => 'CV00G35570',
			(int) 2 => 'CV00G39720',
			(int) 3 => 'CV00G40850',
			(int) 4 => 'CV00G29940',
			(int) 5 => 'CV00G88020'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_08G02540'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0271106'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G20920',
			(int) 1 => 'HE0000G44530'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_18G00290'
		),
		'ome' => array(
			(int) 0 => 'OM_02G01500'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_004G02130',
			(int) 1 => 'CNC64A_003G01100',
			(int) 2 => 'CNC64A_002G04590',
			(int) 3 => 'CNC64A_003G01110'
		),
		'gsu' => array(
			(int) 0 => 'gsu127160',
			(int) 1 => 'gsu78240'
		),
		'olu' => array(
			(int) 0 => 'OL04G01390'
		),
		'apr' => array(
			(int) 0 => 'AP00G50430',
			(int) 1 => 'AP00G50420',
			(int) 2 => 'AP00G37390',
			(int) 3 => 'AP00G07700',
			(int) 4 => 'AP00G07690'
		),
		'ota' => array(
			(int) 0 => 'OT_04G01400'
		),
		'ppa' => array(
			(int) 0 => 'PP00174G00210',
			(int) 1 => 'PP00002G02230',
			(int) 2 => 'PP00022G01800'
		),
		'ath' => array(
			(int) 0 => 'AT3G10920',
			(int) 1 => 'AT3G56350',
			(int) 2 => 'AT4G25100',
			(int) 3 => 'AT5G51100',
			(int) 4 => 'AT5G23310'
		),
		'acg' => array(
			(int) 0 => 'AC00G40000',
			(int) 1 => 'AC00G41340',
			(int) 2 => 'AC00G60650',
			(int) 3 => 'AC00G60420',
			(int) 4 => 'AC00G11410',
			(int) 5 => 'AC00G11400'
		),
		'osa' => array(
			(int) 0 => 'OS05G25850',
			(int) 1 => 'OS06G05110',
			(int) 2 => 'OS06G02500'
		),
		'scp' => array(
			(int) 0 => 'SPAC1486.01',
			(int) 1 => 'SPBC3H7.04'
		),
		'cme' => array(
			(int) 0 => 'CM18G01580',
			(int) 1 => 'CM14G00230',
			(int) 2 => 'CM20G00280'
		),
		'pte' => array(
			(int) 0 => 'pte226360',
			(int) 1 => 'pte87360',
			(int) 2 => 'pte256500'
		),
		'atr' => array(
			(int) 0 => 'ATR_00077G00260',
			(int) 1 => 'ATR_00044G00090',
			(int) 2 => 'ATR_00002G00850'
		),
		'sac' => array(
			(int) 0 => 'YHR008C'
		),
		'fcy' => array(
			(int) 0 => 'FC006G08770',
			(int) 1 => 'FC006G04690'
		),
		'emh' => array(
			(int) 0 => 'emh315300',
			(int) 1 => 'emh596200'
		),
		'ccr' => array(
			(int) 0 => 'ccr48440',
			(int) 1 => 'ccr175720'
		),
		'nga' => array(
			(int) 0 => 'Naga_100558g2',
			(int) 1 => 'Naga_100051g29'
		)
	),
	'gene_id' => 'FBgn0010213',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'FBgn0010213',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'AP00G16600',
	'gf_placeholder' => 'HOM03P014805',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'FBgn0010213' => array(
		'gene_id' => 'FBgn0010213',
		'e_value' => '7e-162',
		'bit_score' => '453',
		'alignment_length' => '218',
		'identity_percentage' => '100.00',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004931' => array(
		'gene_id' => 'WBGene00004931',
		'e_value' => '5e-94',
		'bit_score' => '281',
		'alignment_length' => '205',
		'identity_percentage' => '63.90',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSMUSG00000006818' => array(
		'gene_id' => 'ENSMUSG00000006818',
		'e_value' => '3e-92',
		'bit_score' => '276',
		'alignment_length' => '214',
		'identity_percentage' => '59.81',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ENSG00000112096' => array(
		'gene_id' => 'ENSG00000112096',
		'e_value' => '4e-92',
		'bit_score' => '276',
		'alignment_length' => '203',
		'identity_percentage' => '62.07',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AA0011G02290' => array(
		'gene_id' => 'AA0011G02290',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '216',
		'identity_percentage' => '56.02',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'WBGene00004932' => array(
		'gene_id' => 'WBGene00004932',
		'e_value' => '2e-90',
		'bit_score' => '272',
		'alignment_length' => '214',
		'identity_percentage' => '60.75',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CR13G07570' => array(
		'gene_id' => 'CR13G07570',
		'e_value' => '4e-85',
		'bit_score' => '258',
		'alignment_length' => '196',
		'identity_percentage' => '62.24',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP05G03430' => array(
		'gene_id' => 'TP05G03430',
		'e_value' => '6e-85',
		'bit_score' => '259',
		'alignment_length' => '200',
		'identity_percentage' => '57.50',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'VC00G133110' => array(
		'gene_id' => 'VC00G133110',
		'e_value' => '1e-83',
		'bit_score' => '255',
		'alignment_length' => '196',
		'identity_percentage' => '60.20',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PI00G17260' => array(
		'gene_id' => 'PI00G17260',
		'e_value' => '8e-81',
		'bit_score' => '248',
		'alignment_length' => '199',
		'identity_percentage' => '57.29',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.13g02410' => array(
		'gene_id' => 'RCC4223.13g02410',
		'e_value' => '2e-80',
		'bit_score' => '247',
		'alignment_length' => '203',
		'identity_percentage' => '56.16',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PTI_01G05850' => array(
		'gene_id' => 'PTI_01G05850',
		'e_value' => '7e-80',
		'bit_score' => '245',
		'alignment_length' => '196',
		'identity_percentage' => '56.63',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ES0002G00340' => array(
		'gene_id' => 'ES0002G00340',
		'e_value' => '4e-79',
		'bit_score' => '243',
		'alignment_length' => '197',
		'identity_percentage' => '54.31',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'phs144800' => array(
		'gene_id' => 'phs144800',
		'e_value' => '4e-79',
		'bit_score' => '242',
		'alignment_length' => '198',
		'identity_percentage' => '56.57',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MP04G02430' => array(
		'gene_id' => 'MP04G02430',
		'e_value' => '8e-79',
		'bit_score' => '243',
		'alignment_length' => '213',
		'identity_percentage' => '53.52',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ORCC809_04G03810' => array(
		'gene_id' => 'ORCC809_04G03810',
		'e_value' => '2e-77',
		'bit_score' => '238',
		'alignment_length' => '194',
		'identity_percentage' => '54.64',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G04240' => array(
		'gene_id' => 'CV00G04240',
		'e_value' => '5e-76',
		'bit_score' => '234',
		'alignment_length' => '203',
		'identity_percentage' => '53.20',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'MRCC299_08G02540' => array(
		'gene_id' => 'MRCC299_08G02540',
		'e_value' => '5e-76',
		'bit_score' => '235',
		'alignment_length' => '195',
		'identity_percentage' => '54.87',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'DDB_G0271106' => array(
		'gene_id' => 'DDB_G0271106',
		'e_value' => '7e-76',
		'bit_score' => '235',
		'alignment_length' => '200',
		'identity_percentage' => '54.00',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'HE0000G20920' => array(
		'gene_id' => 'HE0000G20920',
		'e_value' => '7e-76',
		'bit_score' => '236',
		'alignment_length' => '188',
		'identity_percentage' => '56.91',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'BPRRCC1105_18G00290' => array(
		'gene_id' => 'BPRRCC1105_18G00290',
		'e_value' => '3e-75',
		'bit_score' => '239',
		'alignment_length' => '190',
		'identity_percentage' => '56.32',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OM_02G01500' => array(
		'gene_id' => 'OM_02G01500',
		'e_value' => '8e-75',
		'bit_score' => '233',
		'alignment_length' => '214',
		'identity_percentage' => '51.40',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CNC64A_004G02130' => array(
		'gene_id' => 'CNC64A_004G02130',
		'e_value' => '4e-73',
		'bit_score' => '227',
		'alignment_length' => '200',
		'identity_percentage' => '52.50',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'gsu127160' => array(
		'gene_id' => 'gsu127160',
		'e_value' => '4e-73',
		'bit_score' => '228',
		'alignment_length' => '215',
		'identity_percentage' => '50.23',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OL04G01390' => array(
		'gene_id' => 'OL04G01390',
		'e_value' => '2e-72',
		'bit_score' => '226',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50430' => array(
		'gene_id' => 'AP00G50430',
		'e_value' => '4e-72',
		'bit_score' => '226',
		'alignment_length' => '218',
		'identity_percentage' => '49.08',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'OT_04G01400' => array(
		'gene_id' => 'OT_04G01400',
		'e_value' => '1e-71',
		'bit_score' => '224',
		'alignment_length' => '194',
		'identity_percentage' => '52.58',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'PP00174G00210' => array(
		'gene_id' => 'PP00174G00210',
		'e_value' => '2e-70',
		'bit_score' => '221',
		'alignment_length' => '214',
		'identity_percentage' => '50.47',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G10920' => array(
		'gene_id' => 'AT3G10920',
		'e_value' => '3e-70',
		'bit_score' => '221',
		'alignment_length' => '206',
		'identity_percentage' => '51.46',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AC00G40000' => array(
		'gene_id' => 'AC00G40000',
		'e_value' => '1e-68',
		'bit_score' => '216',
		'alignment_length' => '220',
		'identity_percentage' => '46.82',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AP00G50420' => array(
		'gene_id' => 'AP00G50420',
		'e_value' => '4e-66',
		'bit_score' => '211',
		'alignment_length' => '210',
		'identity_percentage' => '47.14',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'OS05G25850' => array(
		'gene_id' => 'OS05G25850',
		'e_value' => '1e-64',
		'bit_score' => '206',
		'alignment_length' => '188',
		'identity_percentage' => '52.66',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'SPAC1486.01' => array(
		'gene_id' => 'SPAC1486.01',
		'e_value' => '5e-60',
		'bit_score' => '194',
		'alignment_length' => '201',
		'identity_percentage' => '49.25',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'AT3G56350' => array(
		'gene_id' => 'AT3G56350',
		'e_value' => '4e-59',
		'bit_score' => '192',
		'alignment_length' => '213',
		'identity_percentage' => '44.60',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P199736'
		)
	),
	'CM18G01580' => array(
		'gene_id' => 'CM18G01580',
		'e_value' => '2e-58',
		'bit_score' => '191',
		'alignment_length' => '198',
		'identity_percentage' => '48.99',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'pte226360' => array(
		'gene_id' => 'pte226360',
		'e_value' => '2e-57',
		'bit_score' => '187',
		'alignment_length' => '197',
		'identity_percentage' => '45.18',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'ATR_00077G00260' => array(
		'gene_id' => 'ATR_00077G00260',
		'e_value' => '2e-56',
		'bit_score' => '184',
		'alignment_length' => '170',
		'identity_percentage' => '52.94',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'CV00G35570' => array(
		'gene_id' => 'CV00G35570',
		'e_value' => '3e-55',
		'bit_score' => '182',
		'alignment_length' => '208',
		'identity_percentage' => '45.19',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'VC00G81010' => array(
		'gene_id' => 'VC00G81010',
		'e_value' => '3e-53',
		'bit_score' => '177',
		'alignment_length' => '209',
		'identity_percentage' => '42.58',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'gsu78240' => array(
		'gene_id' => 'gsu78240',
		'e_value' => '7e-53',
		'bit_score' => '176',
		'alignment_length' => '213',
		'identity_percentage' => '42.72',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CR02G06330' => array(
		'gene_id' => 'CR02G06330',
		'e_value' => '1e-52',
		'bit_score' => '175',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'YHR008C' => array(
		'gene_id' => 'YHR008C',
		'e_value' => '3e-52',
		'bit_score' => '174',
		'alignment_length' => '219',
		'identity_percentage' => '42.47',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'FC006G08770' => array(
		'gene_id' => 'FC006G08770',
		'e_value' => '6e-52',
		'bit_score' => '173',
		'alignment_length' => '213',
		'identity_percentage' => '43.66',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'TP03G03480' => array(
		'gene_id' => 'TP03G03480',
		'e_value' => '2e-50',
		'bit_score' => '170',
		'alignment_length' => '212',
		'identity_percentage' => '41.98',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AC00G41340' => array(
		'gene_id' => 'AC00G41340',
		'e_value' => '5e-50',
		'bit_score' => '168',
		'alignment_length' => '209',
		'identity_percentage' => '43.06',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PTI_09G03520' => array(
		'gene_id' => 'PTI_09G03520',
		'e_value' => '8e-49',
		'bit_score' => '167',
		'alignment_length' => '227',
		'identity_percentage' => '38.33',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0091G00170' => array(
		'gene_id' => 'ES0091G00170',
		'e_value' => '1e-48',
		'bit_score' => '167',
		'alignment_length' => '200',
		'identity_percentage' => '43.50',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'emh315300' => array(
		'gene_id' => 'emh315300',
		'e_value' => '3e-48',
		'bit_score' => '165',
		'alignment_length' => '200',
		'identity_percentage' => '43.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CM14G00230' => array(
		'gene_id' => 'CM14G00230',
		'e_value' => '5e-48',
		'bit_score' => '163',
		'alignment_length' => '210',
		'identity_percentage' => '42.86',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G38930' => array(
		'gene_id' => 'PI00G38930',
		'e_value' => '6e-47',
		'bit_score' => '160',
		'alignment_length' => '210',
		'identity_percentage' => '41.43',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'FC006G04690' => array(
		'gene_id' => 'FC006G04690',
		'e_value' => '1e-46',
		'bit_score' => '160',
		'alignment_length' => '208',
		'identity_percentage' => '41.83',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CNC64A_003G01100' => array(
		'gene_id' => 'CNC64A_003G01100',
		'e_value' => '3e-45',
		'bit_score' => '155',
		'alignment_length' => '207',
		'identity_percentage' => '40.58',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'RCC4223.10g01480' => array(
		'gene_id' => 'RCC4223.10g01480',
		'e_value' => '6e-45',
		'bit_score' => '155',
		'alignment_length' => '210',
		'identity_percentage' => '40.95',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'AA0013G02190' => array(
		'gene_id' => 'AA0013G02190',
		'e_value' => '2e-44',
		'bit_score' => '154',
		'alignment_length' => '203',
		'identity_percentage' => '44.33',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'CV00G39720' => array(
		'gene_id' => 'CV00G39720',
		'e_value' => '3e-44',
		'bit_score' => '154',
		'alignment_length' => '216',
		'identity_percentage' => '39.35',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092266'
		)
	),
	'ccr48440' => array(
		'gene_id' => 'ccr48440',
		'e_value' => '2e-42',
		'bit_score' => '151',
		'alignment_length' => '232',
		'identity_percentage' => '37.50',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P001387'
		)
	),
	'RCC4223.09g02580' => array(
		'gene_id' => 'RCC4223.09g02580',
		'e_value' => '1e-41',
		'bit_score' => '147',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ccr175720' => array(
		'gene_id' => 'ccr175720',
		'e_value' => '3e-41',
		'bit_score' => '145',
		'alignment_length' => '209',
		'identity_percentage' => '38.28',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'PI00G45530' => array(
		'gene_id' => 'PI00G45530',
		'e_value' => '7e-40',
		'bit_score' => '142',
		'alignment_length' => '207',
		'identity_percentage' => '37.68',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CV00G40850' => array(
		'gene_id' => 'CV00G40850',
		'e_value' => '6e-38',
		'bit_score' => '138',
		'alignment_length' => '215',
		'identity_percentage' => '37.67',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P092263'
		)
	),
	'CV00G29940' => array(
		'gene_id' => 'CV00G29940',
		'e_value' => '6e-38',
		'bit_score' => '136',
		'alignment_length' => '204',
		'identity_percentage' => '38.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ES0201G00270' => array(
		'gene_id' => 'ES0201G00270',
		'e_value' => '4e-37',
		'bit_score' => '134',
		'alignment_length' => '186',
		'identity_percentage' => '38.17',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G60650' => array(
		'gene_id' => 'AC00G60650',
		'e_value' => '2e-36',
		'bit_score' => '134',
		'alignment_length' => '216',
		'identity_percentage' => '36.57',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'CM20G00280' => array(
		'gene_id' => 'CM20G00280',
		'e_value' => '4e-36',
		'bit_score' => '135',
		'alignment_length' => '205',
		'identity_percentage' => '40.98',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P125267'
		)
	),
	'Naga_100558g2' => array(
		'gene_id' => 'Naga_100558g2',
		'e_value' => '4e-36',
		'bit_score' => '131',
		'alignment_length' => '196',
		'identity_percentage' => '37.76',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ES0421G00040' => array(
		'gene_id' => 'ES0421G00040',
		'e_value' => '7e-36',
		'bit_score' => '132',
		'alignment_length' => '189',
		'identity_percentage' => '39.15',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'ES0219G00060' => array(
		'gene_id' => 'ES0219G00060',
		'e_value' => '1e-35',
		'bit_score' => '131',
		'alignment_length' => '188',
		'identity_percentage' => '38.30',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047863'
		)
	),
	'CV00G88020' => array(
		'gene_id' => 'CV00G88020',
		'e_value' => '2e-34',
		'bit_score' => '130',
		'alignment_length' => '201',
		'identity_percentage' => '38.31',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P104180'
		)
	),
	'CR12G01760' => array(
		'gene_id' => 'CR12G01760',
		'e_value' => '3e-33',
		'bit_score' => '126',
		'alignment_length' => '217',
		'identity_percentage' => '37.79',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CR10G04050' => array(
		'gene_id' => 'CR10G04050',
		'e_value' => '8e-33',
		'bit_score' => '124',
		'alignment_length' => '220',
		'identity_percentage' => '34.09',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G37390' => array(
		'gene_id' => 'AP00G37390',
		'e_value' => '2e-32',
		'bit_score' => '121',
		'alignment_length' => '206',
		'identity_percentage' => '35.44',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CNC64A_002G04590' => array(
		'gene_id' => 'CNC64A_002G04590',
		'e_value' => '3e-32',
		'bit_score' => '122',
		'alignment_length' => '210',
		'identity_percentage' => '36.19',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00002G02230' => array(
		'gene_id' => 'PP00002G02230',
		'e_value' => '4e-32',
		'bit_score' => '123',
		'alignment_length' => '214',
		'identity_percentage' => '36.92',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PI00G57020' => array(
		'gene_id' => 'PI00G57020',
		'e_value' => '8e-31',
		'bit_score' => '117',
		'alignment_length' => '190',
		'identity_percentage' => '39.47',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P095062'
		)
	),
	'CNC64A_053G00030' => array(
		'gene_id' => 'CNC64A_053G00030',
		'e_value' => '3e-30',
		'bit_score' => '113',
		'alignment_length' => '79',
		'identity_percentage' => '56.96',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P171617'
		)
	),
	'AC00G60420' => array(
		'gene_id' => 'AC00G60420',
		'e_value' => '1e-29',
		'bit_score' => '115',
		'alignment_length' => '210',
		'identity_percentage' => '36.67',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P047370'
		)
	),
	'Naga_100051g29' => array(
		'gene_id' => 'Naga_100051g29',
		'e_value' => '2e-29',
		'bit_score' => '115',
		'alignment_length' => '203',
		'identity_percentage' => '33.50',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11410' => array(
		'gene_id' => 'AC00G11410',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AC00G11400' => array(
		'gene_id' => 'AC00G11400',
		'e_value' => '2e-29',
		'bit_score' => '120',
		'alignment_length' => '205',
		'identity_percentage' => '37.07',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105360' => array(
		'gene_id' => 'VC00G105360',
		'e_value' => '7e-29',
		'bit_score' => '114',
		'alignment_length' => '221',
		'identity_percentage' => '34.39',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P151582'
		)
	),
	'VC00G23690' => array(
		'gene_id' => 'VC00G23690',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '248',
		'identity_percentage' => '31.45',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'CR17G01600' => array(
		'gene_id' => 'CR17G01600',
		'e_value' => '3e-28',
		'bit_score' => '113',
		'alignment_length' => '215',
		'identity_percentage' => '36.28',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P133541'
		)
	),
	'VC00G105340' => array(
		'gene_id' => 'VC00G105340',
		'e_value' => '6e-28',
		'bit_score' => '111',
		'alignment_length' => '190',
		'identity_percentage' => '35.26',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'TP07G00620' => array(
		'gene_id' => 'TP07G00620',
		'e_value' => '1e-27',
		'bit_score' => '110',
		'alignment_length' => '194',
		'identity_percentage' => '34.54',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'ATR_00044G00090' => array(
		'gene_id' => 'ATR_00044G00090',
		'e_value' => '2e-27',
		'bit_score' => '110',
		'alignment_length' => '219',
		'identity_percentage' => '32.88',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G105370' => array(
		'gene_id' => 'VC00G105370',
		'e_value' => '6e-27',
		'bit_score' => '108',
		'alignment_length' => '216',
		'identity_percentage' => '32.41',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P188832'
		)
	),
	'OS06G05110' => array(
		'gene_id' => 'OS06G05110',
		'e_value' => '2e-26',
		'bit_score' => '107',
		'alignment_length' => '216',
		'identity_percentage' => '31.94',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT4G25100' => array(
		'gene_id' => 'AT4G25100',
		'e_value' => '8e-26',
		'bit_score' => '105',
		'alignment_length' => '216',
		'identity_percentage' => '33.33',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'CR16G10150' => array(
		'gene_id' => 'CR16G10150',
		'e_value' => '1e-25',
		'bit_score' => '105',
		'alignment_length' => '232',
		'identity_percentage' => '31.47',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P066827'
		)
	),
	'AT5G51100' => array(
		'gene_id' => 'AT5G51100',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '216',
		'identity_percentage' => '31.02',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'VC00G117070' => array(
		'gene_id' => 'VC00G117070',
		'e_value' => '1e-24',
		'bit_score' => '103',
		'alignment_length' => '252',
		'identity_percentage' => '30.16',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P071082'
		)
	),
	'CNC64A_003G01110' => array(
		'gene_id' => 'CNC64A_003G01110',
		'e_value' => '3e-24',
		'bit_score' => '100',
		'alignment_length' => '204',
		'identity_percentage' => '33.82',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P120410'
		)
	),
	'pte87360' => array(
		'gene_id' => 'pte87360',
		'e_value' => '1e-23',
		'bit_score' => '99.0',
		'alignment_length' => '190',
		'identity_percentage' => '34.74',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'PP00022G01800' => array(
		'gene_id' => 'PP00022G01800',
		'e_value' => '2e-23',
		'bit_score' => '99.4',
		'alignment_length' => '209',
		'identity_percentage' => '34.45',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AT5G23310' => array(
		'gene_id' => 'AT5G23310',
		'e_value' => '2e-23',
		'bit_score' => '99.8',
		'alignment_length' => '212',
		'identity_percentage' => '30.66',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07700' => array(
		'gene_id' => 'AP00G07700',
		'e_value' => '4e-23',
		'bit_score' => '95.9',
		'alignment_length' => '119',
		'identity_percentage' => '42.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P004561'
		)
	),
	'ATR_00002G00850' => array(
		'gene_id' => 'ATR_00002G00850',
		'e_value' => '8e-23',
		'bit_score' => '97.8',
		'alignment_length' => '233',
		'identity_percentage' => '32.62',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'pte256500' => array(
		'gene_id' => 'pte256500',
		'e_value' => '1e-19',
		'bit_score' => '87.0',
		'alignment_length' => '143',
		'identity_percentage' => '37.06',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P111717'
		)
	),
	'emh596200' => array(
		'gene_id' => 'emh596200',
		'e_value' => '2e-19',
		'bit_score' => '85.5',
		'alignment_length' => '97',
		'identity_percentage' => '38.14',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P124956'
		)
	),
	'OS06G02500' => array(
		'gene_id' => 'OS06G02500',
		'e_value' => '2e-15',
		'bit_score' => '77.8',
		'alignment_length' => '213',
		'identity_percentage' => '28.17',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P003681'
		)
	),
	'AP00G07690' => array(
		'gene_id' => 'AP00G07690',
		'e_value' => '5e-15',
		'bit_score' => '72.4',
		'alignment_length' => '86',
		'identity_percentage' => '43.02',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P162479'
		)
	),
	'HE0000G44530' => array(
		'gene_id' => 'HE0000G44530',
		'e_value' => '2e-14',
		'bit_score' => '69.7',
		'alignment_length' => '56',
		'identity_percentage' => '57.14',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P174303'
		)
	),
	'CNC64A_053G00010' => array(
		'gene_id' => 'CNC64A_053G00010',
		'e_value' => '2e-13',
		'bit_score' => '67.4',
		'alignment_length' => '53',
		'identity_percentage' => '58.49',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P190791'
		)
	),
	'SPBC3H7.04' => array(
		'gene_id' => 'SPBC3H7.04',
		'e_value' => '3e-10',
		'bit_score' => '61.2',
		'alignment_length' => '141',
		'identity_percentage' => '26.24',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000403',
			'ORTHOFAM' => 'ORTHO03P119626'
		)
	)
)
$similarity_hits_species = array(
	'drm' => array(
		(int) 0 => 'FBgn0010213'
	),
	'cel' => array(
		(int) 0 => 'WBGene00004931',
		(int) 1 => 'WBGene00004932'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000006818'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000112096'
	),
	'aan' => array(
		(int) 0 => 'AA0011G02290',
		(int) 1 => 'AA0013G02190'
	),
	'cre' => array(
		(int) 0 => 'CR13G07570',
		(int) 1 => 'CR02G06330',
		(int) 2 => 'CR12G01760',
		(int) 3 => 'CR10G04050',
		(int) 4 => 'CR17G01600',
		(int) 5 => 'CR16G10150'
	),
	'tps' => array(
		(int) 0 => 'TP05G03430',
		(int) 1 => 'TP03G03480',
		(int) 2 => 'TP07G00620'
	),
	'vca' => array(
		(int) 0 => 'VC00G133110',
		(int) 1 => 'VC00G81010',
		(int) 2 => 'VC00G105360',
		(int) 3 => 'VC00G23690',
		(int) 4 => 'VC00G105340',
		(int) 5 => 'VC00G105370',
		(int) 6 => 'VC00G117070'
	),
	'pse3' => array(
		(int) 0 => 'PI00G17260',
		(int) 1 => 'PI00G38930',
		(int) 2 => 'PI00G45530',
		(int) 3 => 'PI00G57020'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.13g02410',
		(int) 1 => 'RCC4223.10g01480',
		(int) 2 => 'RCC4223.09g02580'
	),
	'ptri' => array(
		(int) 0 => 'PTI_01G05850',
		(int) 1 => 'PTI_09G03520'
	),
	'esi' => array(
		(int) 0 => 'ES0002G00340',
		(int) 1 => 'ES0091G00170',
		(int) 2 => 'ES0201G00270',
		(int) 3 => 'ES0421G00040',
		(int) 4 => 'ES0219G00060'
	),
	'phs' => array(
		(int) 0 => 'phs144800'
	),
	'mpu' => array(
		(int) 0 => 'MP04G02430'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_04G03810'
	),
	'cvu' => array(
		(int) 0 => 'CV00G04240',
		(int) 1 => 'CV00G35570',
		(int) 2 => 'CV00G39720',
		(int) 3 => 'CV00G40850',
		(int) 4 => 'CV00G29940',
		(int) 5 => 'CV00G88020'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_08G02540'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0271106'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G20920',
		(int) 1 => 'HE0000G44530'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_18G00290'
	),
	'ome' => array(
		(int) 0 => 'OM_02G01500'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_004G02130',
		(int) 1 => 'CNC64A_003G01100',
		(int) 2 => 'CNC64A_002G04590',
		(int) 3 => 'CNC64A_003G01110'
	),
	'gsu' => array(
		(int) 0 => 'gsu127160',
		(int) 1 => 'gsu78240'
	),
	'olu' => array(
		(int) 0 => 'OL04G01390'
	),
	'apr' => array(
		(int) 0 => 'AP00G50430',
		(int) 1 => 'AP00G50420',
		(int) 2 => 'AP00G37390',
		(int) 3 => 'AP00G07700',
		(int) 4 => 'AP00G07690'
	),
	'ota' => array(
		(int) 0 => 'OT_04G01400'
	),
	'ppa' => array(
		(int) 0 => 'PP00174G00210',
		(int) 1 => 'PP00002G02230',
		(int) 2 => 'PP00022G01800'
	),
	'ath' => array(
		(int) 0 => 'AT3G10920',
		(int) 1 => 'AT3G56350',
		(int) 2 => 'AT4G25100',
		(int) 3 => 'AT5G51100',
		(int) 4 => 'AT5G23310'
	),
	'acg' => array(
		(int) 0 => 'AC00G40000',
		(int) 1 => 'AC00G41340',
		(int) 2 => 'AC00G60650',
		(int) 3 => 'AC00G60420',
		(int) 4 => 'AC00G11410',
		(int) 5 => 'AC00G11400'
	),
	'osa' => array(
		(int) 0 => 'OS05G25850',
		(int) 1 => 'OS06G05110',
		(int) 2 => 'OS06G02500'
	),
	'scp' => array(
		(int) 0 => 'SPAC1486.01',
		(int) 1 => 'SPBC3H7.04'
	),
	'cme' => array(
		(int) 0 => 'CM18G01580',
		(int) 1 => 'CM14G00230',
		(int) 2 => 'CM20G00280'
	),
	'pte' => array(
		(int) 0 => 'pte226360',
		(int) 1 => 'pte87360',
		(int) 2 => 'pte256500'
	),
	'atr' => array(
		(int) 0 => 'ATR_00077G00260',
		(int) 1 => 'ATR_00044G00090',
		(int) 2 => 'ATR_00002G00850'
	),
	'sac' => array(
		(int) 0 => 'YHR008C'
	),
	'fcy' => array(
		(int) 0 => 'FC006G08770',
		(int) 1 => 'FC006G04690'
	),
	'emh' => array(
		(int) 0 => 'emh315300',
		(int) 1 => 'emh596200'
	),
	'ccr' => array(
		(int) 0 => 'ccr48440',
		(int) 1 => 'ccr175720'
	),
	'nga' => array(
		(int) 0 => 'Naga_100558g2',
		(int) 1 => 'Naga_100051g29'
	)
)
$gene_id = 'FBgn0010213'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'FBgn0010213'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'AP00G16600'
$gf_placeholder = 'HOM03P014805'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_053G00010',
	'e_value' => '2e-13',
	'bit_score' => '67.4',
	'alignment_length' => '53',
	'identity_percentage' => '58.49',
	'gf' => array(
		'HOMFAM' => 'HOM03P000403',
		'ORTHOFAM' => 'ORTHO03P190791'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
FBgn0010213	Drosophila melanogaster	7e-162	453	218	100.00
WBGene00004931	Caenorhabditis elegans	5e-94	281	205	63.90
ENSMUSG00000006818	Mus musculus	3e-92	276	214	59.81
ENSG00000112096	Homo sapiens	4e-92	276	203	62.07
AA0011G02290	Aureococcus anophagefferens	2e-90	272	216	56.02
WBGene00004932	Caenorhabditis elegans	2e-90	272	214	60.75
CR13G07570	Chlamydomonas reinhardtii	4e-85	258	196	62.24
TP05G03430	Thalassiosira pseudonana	6e-85	259	200	57.50
VC00G133110	Volvox carteri	1e-83	255	196	60.20
PI00G17260	Picochlorum sp. SENEW3 (SE3)	8e-81	248	199	57.29
RCC4223.13g02410	Picochlorum_RCC4223	2e-80	247	203	56.16
PTI_01G05850	Phaeodactylum tricornutum	7e-80	245	196	56.63
ES0002G00340	Ectocarpus siliculosus	4e-79	243	197	54.31
phs144800	Phytophtora sojae	4e-79	242	198	56.57
MP04G02430	Micromonas pusilla strain CCMP1545	8e-79	243	213	53.52
ORCC809_04G03810	Ostreococcus sp RCC809	2e-77	238	194	54.64
CV00G04240	Coccomyxa subellipsoidea C-169	5e-76	234	203	53.20
MRCC299_08G02540	Micromonas sp RCC299	5e-76	235	195	54.87
DDB_G0271106	Dictyostelium discoideum	7e-76	235	200	54.00
HE0000G20920	Helicosporidium sp.	7e-76	236	188	56.91
BPRRCC1105_18G00290	Bathycoccus prasinos	3e-75	239	190	56.32
OM_02G01500	Ostreococcus mediterraneus	8e-75	233	214	51.40
CNC64A_004G02130	Chlorella sp NC64A	4e-73	227	200	52.50
gsu127160	Galdieria sulphuraria	4e-73	228	215	50.23
OL04G01390	Ostreococcus lucimarinus	2e-72	226	194	52.58
AP00G50430	Auxenochlorella protothecoides	4e-72	226	218	49.08
OT_04G01400	Ostreococcus tauri	1e-71	224	194	52.58
PP00174G00210	Physcomitrella patens	2e-70	221	214	50.47
AT3G10920	Arabidopsis thaliana	3e-70	221	206	51.46
AC00G40000	Asterochloris sp. Cgr-DA1pho v2.0	1e-68	216	220	46.82
AP00G50420	Auxenochlorella protothecoides	4e-66	211	210	47.14
OS05G25850	Oryza sativa	1e-64	206	188	52.66
SPAC1486.01	Schizosaccharomyces pombe	5e-60	194	201	49.25
AT3G56350	Arabidopsis thaliana	4e-59	192	213	44.60
CM18G01580	Cyanidioschyzon merolae	2e-58	191	198	48.99
pte226360	Paramecium tetraurelia	2e-57	187	197	45.18
ATR_00077G00260	Amborella trichopoda	2e-56	184	170	52.94
CV00G35570	Coccomyxa subellipsoidea C-169	3e-55	182	208	45.19
VC00G81010	Volvox carteri	3e-53	177	209	42.58
gsu78240	Galdieria sulphuraria	7e-53	176	213	42.72
CR02G06330	Chlamydomonas reinhardtii	1e-52	175	209	43.06
YHR008C	Saccharomyces cerevisiae strain S288C	3e-52	174	219	42.47
FC006G08770	Fragilariopsis cylindrus	6e-52	173	213	43.66
TP03G03480	Thalassiosira pseudonana	2e-50	170	212	41.98
AC00G41340	Asterochloris sp. Cgr-DA1pho v2.0	5e-50	168	209	43.06
PTI_09G03520	Phaeodactylum tricornutum	8e-49	167	227	38.33
ES0091G00170	Ectocarpus siliculosus	1e-48	167	200	43.50
emh315300	Emiliania huxleyi	3e-48	165	200	43.00
CM14G00230	Cyanidioschyzon merolae	5e-48	163	210	42.86
PI00G38930	Picochlorum sp. SENEW3 (SE3)	6e-47	160	210	41.43
FC006G04690	Fragilariopsis cylindrus	1e-46	160	208	41.83
CNC64A_003G01100	Chlorella sp NC64A	3e-45	155	207	40.58
RCC4223.10g01480	Picochlorum_RCC4223	6e-45	155	210	40.95
AA0013G02190	Aureococcus anophagefferens	2e-44	154	203	44.33
CV00G39720	Coccomyxa subellipsoidea C-169	3e-44	154	216	39.35
ccr48440	Chondrus crispus	2e-42	151	232	37.50
RCC4223.09g02580	Picochlorum_RCC4223	1e-41	147	215	37.67
ccr175720	Chondrus crispus	3e-41	145	209	38.28
PI00G45530	Picochlorum sp. SENEW3 (SE3)	7e-40	142	207	37.68
CV00G40850	Coccomyxa subellipsoidea C-169	6e-38	138	215	37.67
CV00G29940	Coccomyxa subellipsoidea C-169	6e-38	136	204	38.73
ES0201G00270	Ectocarpus siliculosus	4e-37	134	186	38.17
AC00G60650	Asterochloris sp. Cgr-DA1pho v2.0	2e-36	134	216	36.57
CM20G00280	Cyanidioschyzon merolae	4e-36	135	205	40.98
Naga_100558g2	Nannochloropsis gaditana	4e-36	131	196	37.76
ES0421G00040	Ectocarpus siliculosus	7e-36	132	189	39.15
ES0219G00060	Ectocarpus siliculosus	1e-35	131	188	38.30
CV00G88020	Coccomyxa subellipsoidea C-169	2e-34	130	201	38.31
CR12G01760	Chlamydomonas reinhardtii	3e-33	126	217	37.79
CR10G04050	Chlamydomonas reinhardtii	8e-33	124	220	34.09
AP00G37390	Auxenochlorella protothecoides	2e-32	121	206	35.44
CNC64A_002G04590	Chlorella sp NC64A	3e-32	122	210	36.19
PP00002G02230	Physcomitrella patens	4e-32	123	214	36.92
PI00G57020	Picochlorum sp. SENEW3 (SE3)	8e-31	117	190	39.47
CNC64A_053G00030		3e-30	113	79	56.96
AC00G60420	Asterochloris sp. Cgr-DA1pho v2.0	1e-29	115	210	36.67
Naga_100051g29	Nannochloropsis gaditana	2e-29	115	203	33.50
AC00G11410	Asterochloris sp. Cgr-DA1pho v2.0	2e-29	120	205	37.07
AC00G11400	Asterochloris sp. Cgr-DA1pho v2.0	2e-29	120	205	37.07
VC00G105360	Volvox carteri	7e-29	114	221	34.39
VC00G23690	Volvox carteri	3e-28	113	248	31.45
CR17G01600	Chlamydomonas reinhardtii	3e-28	113	215	36.28
VC00G105340	Volvox carteri	6e-28	111	190	35.26
TP07G00620	Thalassiosira pseudonana	1e-27	110	194	34.54
ATR_00044G00090	Amborella trichopoda	2e-27	110	219	32.88
VC00G105370	Volvox carteri	6e-27	108	216	32.41
OS06G05110	Oryza sativa	2e-26	107	216	31.94
AT4G25100	Arabidopsis thaliana	8e-26	105	216	33.33
CR16G10150	Chlamydomonas reinhardtii	1e-25	105	232	31.47
AT5G51100	Arabidopsis thaliana	1e-24	103	216	31.02
VC00G117070	Volvox carteri	1e-24	103	252	30.16
CNC64A_003G01110	Chlorella sp NC64A	3e-24	100	204	33.82
pte87360	Paramecium tetraurelia	1e-23	99.0	190	34.74
PP00022G01800	Physcomitrella patens	2e-23	99.4	209	34.45
AT5G23310	Arabidopsis thaliana	2e-23	99.8	212	30.66
AP00G07700	Auxenochlorella protothecoides	4e-23	95.9	119	42.02
ATR_00002G00850	Amborella trichopoda	8e-23	97.8	233	32.62
pte256500	Paramecium tetraurelia	1e-19	87.0	143	37.06
emh596200	Emiliania huxleyi	2e-19	85.5	97	38.14
OS06G02500	Oryza sativa	2e-15	77.8	213	28.17
AP00G07690	Auxenochlorella protothecoides	5e-15	72.4	86	43.02
HE0000G44530	Helicosporidium sp.	2e-14	69.7	56	57.14
CNC64A_053G00010		2e-13	67.4	53	58.49
SPBC3H7.04	Schizosaccharomyces pombe	3e-10	61.2	141	26.24

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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