Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: ENSMUSG00000041879

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'ENSMUSG00000041879' => array(
			'gene_id' => 'ENSMUSG00000041879',
			'e_value' => '0.0',
			'bit_score' => '2153',
			'alignment_length' => '1041',
			'identity_percentage' => '100.00',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000198700' => array(
			'gene_id' => 'ENSG00000198700',
			'e_value' => '0.0',
			'bit_score' => '2124',
			'alignment_length' => '1042',
			'identity_percentage' => '98.85',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0037894' => array(
			'gene_id' => 'FBgn0037894',
			'e_value' => '0.0',
			'bit_score' => '661',
			'alignment_length' => '1051',
			'identity_percentage' => '36.82',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00055G01510' => array(
			'gene_id' => 'PP00055G01510',
			'e_value' => '1e-149',
			'bit_score' => '480',
			'alignment_length' => '919',
			'identity_percentage' => '32.43',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT1G26170' => array(
			'gene_id' => 'AT1G26170',
			'e_value' => '1e-146',
			'bit_score' => '471',
			'alignment_length' => '1036',
			'identity_percentage' => '28.57',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00006G02630' => array(
			'gene_id' => 'ATR_00006G02630',
			'e_value' => '1e-139',
			'bit_score' => '452',
			'alignment_length' => '1042',
			'identity_percentage' => '29.46',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G34520' => array(
			'gene_id' => 'CV00G34520',
			'e_value' => '7e-121',
			'bit_score' => '400',
			'alignment_length' => '917',
			'identity_percentage' => '31.30',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_08G00960' => array(
			'gene_id' => 'OM_08G00960',
			'e_value' => '1e-112',
			'bit_score' => '380',
			'alignment_length' => '927',
			'identity_percentage' => '28.80',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP05G01540' => array(
			'gene_id' => 'MP05G01540',
			'e_value' => '1e-104',
			'bit_score' => '358',
			'alignment_length' => '980',
			'identity_percentage' => '28.37',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_06G05440' => array(
			'gene_id' => 'MRCC299_06G05440',
			'e_value' => '3e-101',
			'bit_score' => '349',
			'alignment_length' => '985',
			'identity_percentage' => '28.43',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL08G00950' => array(
			'gene_id' => 'OL08G00950',
			'e_value' => '1e-99',
			'bit_score' => '344',
			'alignment_length' => '935',
			'identity_percentage' => '28.45',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs51370' => array(
			'gene_id' => 'phs51370',
			'e_value' => '2e-99',
			'bit_score' => '343',
			'alignment_length' => '969',
			'identity_percentage' => '28.07',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G57310' => array(
			'gene_id' => 'AC00G57310',
			'e_value' => '4e-97',
			'bit_score' => '334',
			'alignment_length' => '865',
			'identity_percentage' => '29.13',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_08G00970' => array(
			'gene_id' => 'ORCC809_08G00970',
			'e_value' => '3e-95',
			'bit_score' => '332',
			'alignment_length' => '909',
			'identity_percentage' => '28.60',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_08G01080' => array(
			'gene_id' => 'OT_08G01080',
			'e_value' => '2e-94',
			'bit_score' => '329',
			'alignment_length' => '936',
			'identity_percentage' => '27.24',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G16280' => array(
			'gene_id' => 'OS06G16280',
			'e_value' => '1e-87',
			'bit_score' => '310',
			'alignment_length' => '853',
			'identity_percentage' => '26.85',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_006G02920' => array(
			'gene_id' => 'CNC64A_006G02920',
			'e_value' => '6e-81',
			'bit_score' => '286',
			'alignment_length' => '614',
			'identity_percentage' => '32.25',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0279327' => array(
			'gene_id' => 'DDB_G0279327',
			'e_value' => '2e-73',
			'bit_score' => '268',
			'alignment_length' => '1129',
			'identity_percentage' => '23.74',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_04G01020' => array(
			'gene_id' => 'BPRRCC1105_04G01020',
			'e_value' => '3e-70',
			'bit_score' => '258',
			'alignment_length' => '1001',
			'identity_percentage' => '25.77',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G40060' => array(
			'gene_id' => 'VC00G40060',
			'e_value' => '4e-56',
			'bit_score' => '216',
			'alignment_length' => '1016',
			'identity_percentage' => '24.31',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR08G05350' => array(
			'gene_id' => 'CR08G05350',
			'e_value' => '6e-51',
			'bit_score' => '200',
			'alignment_length' => '731',
			'identity_percentage' => '27.63',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G46670' => array(
			'gene_id' => 'PI00G46670',
			'e_value' => '6e-51',
			'bit_score' => '199',
			'alignment_length' => '1042',
			'identity_percentage' => '23.70',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07420' => array(
			'gene_id' => 'AP00G07420',
			'e_value' => '3e-50',
			'bit_score' => '198',
			'alignment_length' => '536',
			'identity_percentage' => '28.54',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC22H10.03c' => array(
			'gene_id' => 'SPAC22H10.03c',
			'e_value' => '8e-50',
			'bit_score' => '196',
			'alignment_length' => '912',
			'identity_percentage' => '24.34',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01120' => array(
			'gene_id' => 'RCC4223.10g01120',
			'e_value' => '2e-48',
			'bit_score' => '191',
			'alignment_length' => '1029',
			'identity_percentage' => '22.55',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte619680' => array(
			'gene_id' => 'pte619680',
			'e_value' => '7e-22',
			'bit_score' => '106',
			'alignment_length' => '1037',
			'identity_percentage' => '19.86',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte779780' => array(
			'gene_id' => 'pte779780',
			'e_value' => '3e-20',
			'bit_score' => '101',
			'alignment_length' => '1106',
			'identity_percentage' => '19.26',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0012G00820' => array(
			'gene_id' => 'ES0012G00820',
			'e_value' => '4e-18',
			'bit_score' => '94.4',
			'alignment_length' => '587',
			'identity_percentage' => '23.00',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte559390' => array(
			'gene_id' => 'pte559390',
			'e_value' => '3e-17',
			'bit_score' => '91.7',
			'alignment_length' => '946',
			'identity_percentage' => '19.24',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh128630' => array(
			'gene_id' => 'emh128630',
			'e_value' => '3e-17',
			'bit_score' => '91.3',
			'alignment_length' => '130',
			'identity_percentage' => '40.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte633990' => array(
			'gene_id' => 'pte633990',
			'e_value' => '6e-17',
			'bit_score' => '90.5',
			'alignment_length' => '948',
			'identity_percentage' => '19.94',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YGL241W' => array(
			'gene_id' => 'YGL241W',
			'e_value' => '2e-14',
			'bit_score' => '82.4',
			'alignment_length' => '187',
			'identity_percentage' => '31.02',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G36490' => array(
			'gene_id' => 'HE0000G36490',
			'e_value' => '2e-13',
			'bit_score' => '75.1',
			'alignment_length' => '193',
			'identity_percentage' => '27.46',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC002G07080' => array(
			'gene_id' => 'FC002G07080',
			'e_value' => '4e-13',
			'bit_score' => '77.8',
			'alignment_length' => '648',
			'identity_percentage' => '23.46',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00020G00480' => array(
			'gene_id' => 'ATR_00020G00480',
			'e_value' => '5e-11',
			'bit_score' => '71.2',
			'alignment_length' => '590',
			'identity_percentage' => '21.53',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0022213' => array(
			'gene_id' => 'FBgn0022213',
			'e_value' => '4e-10',
			'bit_score' => '68.6',
			'alignment_length' => '144',
			'identity_percentage' => '26.39',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT2G31660' => array(
			'gene_id' => 'AT2G31660',
			'e_value' => '2e-09',
			'bit_score' => '65.9',
			'alignment_length' => '174',
			'identity_percentage' => '24.71',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G35640' => array(
			'gene_id' => 'CV00G35640',
			'e_value' => '3e-09',
			'bit_score' => '65.5',
			'alignment_length' => '154',
			'identity_percentage' => '30.52',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G99230' => array(
			'gene_id' => 'AC00G99230',
			'e_value' => '7e-09',
			'bit_score' => '64.3',
			'alignment_length' => '167',
			'identity_percentage' => '28.14',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00002079' => array(
			'gene_id' => 'WBGene00002079',
			'e_value' => '9e-09',
			'bit_score' => '63.9',
			'alignment_length' => '544',
			'identity_percentage' => '20.40',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_15G00130' => array(
			'gene_id' => 'MRCC299_15G00130',
			'e_value' => '9e-09',
			'bit_score' => '63.9',
			'alignment_length' => '170',
			'identity_percentage' => '30.00',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G43030' => array(
			'gene_id' => 'HE0000G43030',
			'e_value' => '1e-08',
			'bit_score' => '60.8',
			'alignment_length' => '152',
			'identity_percentage' => '30.92',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_328G00010' => array(
			'gene_id' => 'CNC64A_328G00010',
			'e_value' => '2e-08',
			'bit_score' => '59.7',
			'alignment_length' => '125',
			'identity_percentage' => '31.20',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G59020' => array(
			'gene_id' => 'AT3G59020',
			'e_value' => '2e-08',
			'bit_score' => '62.8',
			'alignment_length' => '583',
			'identity_percentage' => '19.04',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0039G00710' => array(
			'gene_id' => 'ES0039G00710',
			'e_value' => '2e-08',
			'bit_score' => '62.8',
			'alignment_length' => '126',
			'identity_percentage' => '34.13',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G08960' => array(
			'gene_id' => 'AT3G08960',
			'e_value' => '4e-08',
			'bit_score' => '62.0',
			'alignment_length' => '178',
			'identity_percentage' => '26.97',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP14G03370' => array(
			'gene_id' => 'MP14G03370',
			'e_value' => '6e-08',
			'bit_score' => '61.2',
			'alignment_length' => '154',
			'identity_percentage' => '27.92',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G31840' => array(
			'gene_id' => 'PI00G31840',
			'e_value' => '7e-08',
			'bit_score' => '60.8',
			'alignment_length' => '131',
			'identity_percentage' => '29.01',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00203G00190' => array(
			'gene_id' => 'PP00203G00190',
			'e_value' => '7e-08',
			'bit_score' => '60.8',
			'alignment_length' => '152',
			'identity_percentage' => '27.63',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000086200' => array(
			'gene_id' => 'ENSG00000086200',
			'e_value' => '7e-08',
			'bit_score' => '60.8',
			'alignment_length' => '589',
			'identity_percentage' => '18.85',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G08020' => array(
			'gene_id' => 'AP00G08020',
			'e_value' => '8e-08',
			'bit_score' => '60.8',
			'alignment_length' => '474',
			'identity_percentage' => '23.21',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G82800' => array(
			'gene_id' => 'VC00G82800',
			'e_value' => '8e-08',
			'bit_score' => '60.5',
			'alignment_length' => '141',
			'identity_percentage' => '30.50',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP07G02400' => array(
			'gene_id' => 'MP07G02400',
			'e_value' => '8e-08',
			'bit_score' => '60.5',
			'alignment_length' => '354',
			'identity_percentage' => '22.03',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G23940' => array(
			'gene_id' => 'PI00G23940',
			'e_value' => '9e-08',
			'bit_score' => '60.5',
			'alignment_length' => '598',
			'identity_percentage' => '19.73',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G91050' => array(
			'gene_id' => 'AC00G91050',
			'e_value' => '1e-07',
			'bit_score' => '60.1',
			'alignment_length' => '177',
			'identity_percentage' => '29.38',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00271G00170' => array(
			'gene_id' => 'PP00271G00170',
			'e_value' => '1e-07',
			'bit_score' => '60.1',
			'alignment_length' => '154',
			'identity_percentage' => '26.62',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G13130' => array(
			'gene_id' => 'CV00G13130',
			'e_value' => '2e-07',
			'bit_score' => '59.7',
			'alignment_length' => '179',
			'identity_percentage' => '25.70',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000042590' => array(
			'gene_id' => 'ENSMUSG00000042590',
			'e_value' => '2e-07',
			'bit_score' => '59.3',
			'alignment_length' => '589',
			'identity_percentage' => '18.85',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00007G01340' => array(
			'gene_id' => 'ATR_00007G01340',
			'e_value' => '5e-07',
			'bit_score' => '58.2',
			'alignment_length' => '160',
			'identity_percentage' => '28.12',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS07G49260' => array(
			'gene_id' => 'OS07G49260',
			'e_value' => '7e-07',
			'bit_score' => '57.8',
			'alignment_length' => '157',
			'identity_percentage' => '28.03',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR16G08080' => array(
			'gene_id' => 'CR16G08080',
			'e_value' => '1e-06',
			'bit_score' => '56.6',
			'alignment_length' => '149',
			'identity_percentage' => '28.86',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G41570' => array(
			'gene_id' => 'PI00G41570',
			'e_value' => '2e-06',
			'bit_score' => '55.8',
			'alignment_length' => '142',
			'identity_percentage' => '27.46',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000002718' => array(
			'gene_id' => 'ENSMUSG00000002718',
			'e_value' => '3e-06',
			'bit_score' => '55.5',
			'alignment_length' => '146',
			'identity_percentage' => '23.97',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs232890' => array(
			'gene_id' => 'phs232890',
			'e_value' => '4e-06',
			'bit_score' => '55.1',
			'alignment_length' => '184',
			'identity_percentage' => '28.80',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01830' => array(
			'gene_id' => 'RCC4223.10g01830',
			'e_value' => '6e-06',
			'bit_score' => '54.7',
			'alignment_length' => '142',
			'identity_percentage' => '27.46',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G01560' => array(
			'gene_id' => 'ATR_00002G01560',
			'e_value' => '7e-06',
			'bit_score' => '53.9',
			'alignment_length' => '202',
			'identity_percentage' => '26.24',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'mus' => array(
			(int) 0 => 'ENSMUSG00000041879',
			(int) 1 => 'ENSMUSG00000042590',
			(int) 2 => 'ENSMUSG00000002718'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000198700',
			(int) 1 => 'ENSG00000086200'
		),
		'drm' => array(
			(int) 0 => 'FBgn0037894',
			(int) 1 => 'FBgn0022213'
		),
		'ppa' => array(
			(int) 0 => 'PP00055G01510',
			(int) 1 => 'PP00203G00190',
			(int) 2 => 'PP00271G00170'
		),
		'ath' => array(
			(int) 0 => 'AT1G26170',
			(int) 1 => 'AT2G31660',
			(int) 2 => 'AT3G59020',
			(int) 3 => 'AT3G08960'
		),
		'atr' => array(
			(int) 0 => 'ATR_00006G02630',
			(int) 1 => 'ATR_00020G00480',
			(int) 2 => 'ATR_00007G01340',
			(int) 3 => 'ATR_00002G01560'
		),
		'cvu' => array(
			(int) 0 => 'CV00G34520',
			(int) 1 => 'CV00G35640',
			(int) 2 => 'CV00G13130'
		),
		'ome' => array(
			(int) 0 => 'OM_08G00960'
		),
		'mpu' => array(
			(int) 0 => 'MP05G01540',
			(int) 1 => 'MP14G03370',
			(int) 2 => 'MP07G02400'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_06G05440',
			(int) 1 => 'MRCC299_15G00130'
		),
		'olu' => array(
			(int) 0 => 'OL08G00950'
		),
		'phs' => array(
			(int) 0 => 'phs51370',
			(int) 1 => 'phs232890'
		),
		'acg' => array(
			(int) 0 => 'AC00G57310',
			(int) 1 => 'AC00G99230',
			(int) 2 => 'AC00G91050'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_08G00970'
		),
		'ota' => array(
			(int) 0 => 'OT_08G01080'
		),
		'osa' => array(
			(int) 0 => 'OS06G16280',
			(int) 1 => 'OS07G49260'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_006G02920'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0279327'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_04G01020'
		),
		'vca' => array(
			(int) 0 => 'VC00G40060',
			(int) 1 => 'VC00G82800'
		),
		'cre' => array(
			(int) 0 => 'CR08G05350',
			(int) 1 => 'CR16G08080'
		),
		'pse3' => array(
			(int) 0 => 'PI00G46670',
			(int) 1 => 'PI00G31840',
			(int) 2 => 'PI00G23940',
			(int) 3 => 'PI00G41570'
		),
		'apr' => array(
			(int) 0 => 'AP00G07420',
			(int) 1 => 'AP00G08020'
		),
		'scp' => array(
			(int) 0 => 'SPAC22H10.03c'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.10g01120',
			(int) 1 => 'RCC4223.10g01830'
		),
		'pte' => array(
			(int) 0 => 'pte619680',
			(int) 1 => 'pte779780',
			(int) 2 => 'pte559390',
			(int) 3 => 'pte633990'
		),
		'esi' => array(
			(int) 0 => 'ES0012G00820',
			(int) 1 => 'ES0039G00710'
		),
		'emh' => array(
			(int) 0 => 'emh128630'
		),
		'sac' => array(
			(int) 0 => 'YGL241W'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G36490',
			(int) 1 => 'HE0000G43030'
		),
		'fcy' => array(
			(int) 0 => 'FC002G07080'
		),
		'cel' => array(
			(int) 0 => 'WBGene00002079'
		)
	),
	'gene_id' => 'ENSMUSG00000041879',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'ENSMUSG00000041879',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'OL05G01500',
	'gf_placeholder' => 'HOM03P005533',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'ENSMUSG00000041879' => array(
		'gene_id' => 'ENSMUSG00000041879',
		'e_value' => '0.0',
		'bit_score' => '2153',
		'alignment_length' => '1041',
		'identity_percentage' => '100.00',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'ENSG00000198700' => array(
		'gene_id' => 'ENSG00000198700',
		'e_value' => '0.0',
		'bit_score' => '2124',
		'alignment_length' => '1042',
		'identity_percentage' => '98.85',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'FBgn0037894' => array(
		'gene_id' => 'FBgn0037894',
		'e_value' => '0.0',
		'bit_score' => '661',
		'alignment_length' => '1051',
		'identity_percentage' => '36.82',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'PP00055G01510' => array(
		'gene_id' => 'PP00055G01510',
		'e_value' => '1e-149',
		'bit_score' => '480',
		'alignment_length' => '919',
		'identity_percentage' => '32.43',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'AT1G26170' => array(
		'gene_id' => 'AT1G26170',
		'e_value' => '1e-146',
		'bit_score' => '471',
		'alignment_length' => '1036',
		'identity_percentage' => '28.57',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'ATR_00006G02630' => array(
		'gene_id' => 'ATR_00006G02630',
		'e_value' => '1e-139',
		'bit_score' => '452',
		'alignment_length' => '1042',
		'identity_percentage' => '29.46',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'CV00G34520' => array(
		'gene_id' => 'CV00G34520',
		'e_value' => '7e-121',
		'bit_score' => '400',
		'alignment_length' => '917',
		'identity_percentage' => '31.30',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OM_08G00960' => array(
		'gene_id' => 'OM_08G00960',
		'e_value' => '1e-112',
		'bit_score' => '380',
		'alignment_length' => '927',
		'identity_percentage' => '28.80',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'MP05G01540' => array(
		'gene_id' => 'MP05G01540',
		'e_value' => '1e-104',
		'bit_score' => '358',
		'alignment_length' => '980',
		'identity_percentage' => '28.37',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'MRCC299_06G05440' => array(
		'gene_id' => 'MRCC299_06G05440',
		'e_value' => '3e-101',
		'bit_score' => '349',
		'alignment_length' => '985',
		'identity_percentage' => '28.43',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OL08G00950' => array(
		'gene_id' => 'OL08G00950',
		'e_value' => '1e-99',
		'bit_score' => '344',
		'alignment_length' => '935',
		'identity_percentage' => '28.45',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'phs51370' => array(
		'gene_id' => 'phs51370',
		'e_value' => '2e-99',
		'bit_score' => '343',
		'alignment_length' => '969',
		'identity_percentage' => '28.07',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'AC00G57310' => array(
		'gene_id' => 'AC00G57310',
		'e_value' => '4e-97',
		'bit_score' => '334',
		'alignment_length' => '865',
		'identity_percentage' => '29.13',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'ORCC809_08G00970' => array(
		'gene_id' => 'ORCC809_08G00970',
		'e_value' => '3e-95',
		'bit_score' => '332',
		'alignment_length' => '909',
		'identity_percentage' => '28.60',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OT_08G01080' => array(
		'gene_id' => 'OT_08G01080',
		'e_value' => '2e-94',
		'bit_score' => '329',
		'alignment_length' => '936',
		'identity_percentage' => '27.24',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OS06G16280' => array(
		'gene_id' => 'OS06G16280',
		'e_value' => '1e-87',
		'bit_score' => '310',
		'alignment_length' => '853',
		'identity_percentage' => '26.85',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'CNC64A_006G02920' => array(
		'gene_id' => 'CNC64A_006G02920',
		'e_value' => '6e-81',
		'bit_score' => '286',
		'alignment_length' => '614',
		'identity_percentage' => '32.25',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'DDB_G0279327' => array(
		'gene_id' => 'DDB_G0279327',
		'e_value' => '2e-73',
		'bit_score' => '268',
		'alignment_length' => '1129',
		'identity_percentage' => '23.74',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'BPRRCC1105_04G01020' => array(
		'gene_id' => 'BPRRCC1105_04G01020',
		'e_value' => '3e-70',
		'bit_score' => '258',
		'alignment_length' => '1001',
		'identity_percentage' => '25.77',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'VC00G40060' => array(
		'gene_id' => 'VC00G40060',
		'e_value' => '4e-56',
		'bit_score' => '216',
		'alignment_length' => '1016',
		'identity_percentage' => '24.31',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'CR08G05350' => array(
		'gene_id' => 'CR08G05350',
		'e_value' => '6e-51',
		'bit_score' => '200',
		'alignment_length' => '731',
		'identity_percentage' => '27.63',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'PI00G46670' => array(
		'gene_id' => 'PI00G46670',
		'e_value' => '6e-51',
		'bit_score' => '199',
		'alignment_length' => '1042',
		'identity_percentage' => '23.70',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'AP00G07420' => array(
		'gene_id' => 'AP00G07420',
		'e_value' => '3e-50',
		'bit_score' => '198',
		'alignment_length' => '536',
		'identity_percentage' => '28.54',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'SPAC22H10.03c' => array(
		'gene_id' => 'SPAC22H10.03c',
		'e_value' => '8e-50',
		'bit_score' => '196',
		'alignment_length' => '912',
		'identity_percentage' => '24.34',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'RCC4223.10g01120' => array(
		'gene_id' => 'RCC4223.10g01120',
		'e_value' => '2e-48',
		'bit_score' => '191',
		'alignment_length' => '1029',
		'identity_percentage' => '22.55',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'pte619680' => array(
		'gene_id' => 'pte619680',
		'e_value' => '7e-22',
		'bit_score' => '106',
		'alignment_length' => '1037',
		'identity_percentage' => '19.86',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'pte779780' => array(
		'gene_id' => 'pte779780',
		'e_value' => '3e-20',
		'bit_score' => '101',
		'alignment_length' => '1106',
		'identity_percentage' => '19.26',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'ES0012G00820' => array(
		'gene_id' => 'ES0012G00820',
		'e_value' => '4e-18',
		'bit_score' => '94.4',
		'alignment_length' => '587',
		'identity_percentage' => '23.00',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'pte559390' => array(
		'gene_id' => 'pte559390',
		'e_value' => '3e-17',
		'bit_score' => '91.7',
		'alignment_length' => '946',
		'identity_percentage' => '19.24',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'emh128630' => array(
		'gene_id' => 'emh128630',
		'e_value' => '3e-17',
		'bit_score' => '91.3',
		'alignment_length' => '130',
		'identity_percentage' => '40.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P002045'
		)
	),
	'pte633990' => array(
		'gene_id' => 'pte633990',
		'e_value' => '6e-17',
		'bit_score' => '90.5',
		'alignment_length' => '948',
		'identity_percentage' => '19.94',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'YGL241W' => array(
		'gene_id' => 'YGL241W',
		'e_value' => '2e-14',
		'bit_score' => '82.4',
		'alignment_length' => '187',
		'identity_percentage' => '31.02',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'HE0000G36490' => array(
		'gene_id' => 'HE0000G36490',
		'e_value' => '2e-13',
		'bit_score' => '75.1',
		'alignment_length' => '193',
		'identity_percentage' => '27.46',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'FC002G07080' => array(
		'gene_id' => 'FC002G07080',
		'e_value' => '4e-13',
		'bit_score' => '77.8',
		'alignment_length' => '648',
		'identity_percentage' => '23.46',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'ATR_00020G00480' => array(
		'gene_id' => 'ATR_00020G00480',
		'e_value' => '5e-11',
		'bit_score' => '71.2',
		'alignment_length' => '590',
		'identity_percentage' => '21.53',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'FBgn0022213' => array(
		'gene_id' => 'FBgn0022213',
		'e_value' => '4e-10',
		'bit_score' => '68.6',
		'alignment_length' => '144',
		'identity_percentage' => '26.39',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'AT2G31660' => array(
		'gene_id' => 'AT2G31660',
		'e_value' => '2e-09',
		'bit_score' => '65.9',
		'alignment_length' => '174',
		'identity_percentage' => '24.71',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'CV00G35640' => array(
		'gene_id' => 'CV00G35640',
		'e_value' => '3e-09',
		'bit_score' => '65.5',
		'alignment_length' => '154',
		'identity_percentage' => '30.52',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'AC00G99230' => array(
		'gene_id' => 'AC00G99230',
		'e_value' => '7e-09',
		'bit_score' => '64.3',
		'alignment_length' => '167',
		'identity_percentage' => '28.14',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'WBGene00002079' => array(
		'gene_id' => 'WBGene00002079',
		'e_value' => '9e-09',
		'bit_score' => '63.9',
		'alignment_length' => '544',
		'identity_percentage' => '20.40',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'MRCC299_15G00130' => array(
		'gene_id' => 'MRCC299_15G00130',
		'e_value' => '9e-09',
		'bit_score' => '63.9',
		'alignment_length' => '170',
		'identity_percentage' => '30.00',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'HE0000G43030' => array(
		'gene_id' => 'HE0000G43030',
		'e_value' => '1e-08',
		'bit_score' => '60.8',
		'alignment_length' => '152',
		'identity_percentage' => '30.92',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'CNC64A_328G00010' => array(
		'gene_id' => 'CNC64A_328G00010',
		'e_value' => '2e-08',
		'bit_score' => '59.7',
		'alignment_length' => '125',
		'identity_percentage' => '31.20',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P146466'
		)
	),
	'AT3G59020' => array(
		'gene_id' => 'AT3G59020',
		'e_value' => '2e-08',
		'bit_score' => '62.8',
		'alignment_length' => '583',
		'identity_percentage' => '19.04',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'ES0039G00710' => array(
		'gene_id' => 'ES0039G00710',
		'e_value' => '2e-08',
		'bit_score' => '62.8',
		'alignment_length' => '126',
		'identity_percentage' => '34.13',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'AT3G08960' => array(
		'gene_id' => 'AT3G08960',
		'e_value' => '4e-08',
		'bit_score' => '62.0',
		'alignment_length' => '178',
		'identity_percentage' => '26.97',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'MP14G03370' => array(
		'gene_id' => 'MP14G03370',
		'e_value' => '6e-08',
		'bit_score' => '61.2',
		'alignment_length' => '154',
		'identity_percentage' => '27.92',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'PI00G31840' => array(
		'gene_id' => 'PI00G31840',
		'e_value' => '7e-08',
		'bit_score' => '60.8',
		'alignment_length' => '131',
		'identity_percentage' => '29.01',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'PP00203G00190' => array(
		'gene_id' => 'PP00203G00190',
		'e_value' => '7e-08',
		'bit_score' => '60.8',
		'alignment_length' => '152',
		'identity_percentage' => '27.63',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'ENSG00000086200' => array(
		'gene_id' => 'ENSG00000086200',
		'e_value' => '7e-08',
		'bit_score' => '60.8',
		'alignment_length' => '589',
		'identity_percentage' => '18.85',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'AP00G08020' => array(
		'gene_id' => 'AP00G08020',
		'e_value' => '8e-08',
		'bit_score' => '60.8',
		'alignment_length' => '474',
		'identity_percentage' => '23.21',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'VC00G82800' => array(
		'gene_id' => 'VC00G82800',
		'e_value' => '8e-08',
		'bit_score' => '60.5',
		'alignment_length' => '141',
		'identity_percentage' => '30.50',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'MP07G02400' => array(
		'gene_id' => 'MP07G02400',
		'e_value' => '8e-08',
		'bit_score' => '60.5',
		'alignment_length' => '354',
		'identity_percentage' => '22.03',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P001622',
			'ORTHOFAM' => 'ORTHO03P000612'
		)
	),
	'PI00G23940' => array(
		'gene_id' => 'PI00G23940',
		'e_value' => '9e-08',
		'bit_score' => '60.5',
		'alignment_length' => '598',
		'identity_percentage' => '19.73',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'AC00G91050' => array(
		'gene_id' => 'AC00G91050',
		'e_value' => '1e-07',
		'bit_score' => '60.1',
		'alignment_length' => '177',
		'identity_percentage' => '29.38',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'PP00271G00170' => array(
		'gene_id' => 'PP00271G00170',
		'e_value' => '1e-07',
		'bit_score' => '60.1',
		'alignment_length' => '154',
		'identity_percentage' => '26.62',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'CV00G13130' => array(
		'gene_id' => 'CV00G13130',
		'e_value' => '2e-07',
		'bit_score' => '59.7',
		'alignment_length' => '179',
		'identity_percentage' => '25.70',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'ENSMUSG00000042590' => array(
		'gene_id' => 'ENSMUSG00000042590',
		'e_value' => '2e-07',
		'bit_score' => '59.3',
		'alignment_length' => '589',
		'identity_percentage' => '18.85',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'ATR_00007G01340' => array(
		'gene_id' => 'ATR_00007G01340',
		'e_value' => '5e-07',
		'bit_score' => '58.2',
		'alignment_length' => '160',
		'identity_percentage' => '28.12',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'OS07G49260' => array(
		'gene_id' => 'OS07G49260',
		'e_value' => '7e-07',
		'bit_score' => '57.8',
		'alignment_length' => '157',
		'identity_percentage' => '28.03',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'CR16G08080' => array(
		'gene_id' => 'CR16G08080',
		'e_value' => '1e-06',
		'bit_score' => '56.6',
		'alignment_length' => '149',
		'identity_percentage' => '28.86',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'PI00G41570' => array(
		'gene_id' => 'PI00G41570',
		'e_value' => '2e-06',
		'bit_score' => '55.8',
		'alignment_length' => '142',
		'identity_percentage' => '27.46',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'ENSMUSG00000002718' => array(
		'gene_id' => 'ENSMUSG00000002718',
		'e_value' => '3e-06',
		'bit_score' => '55.5',
		'alignment_length' => '146',
		'identity_percentage' => '23.97',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'phs232890' => array(
		'gene_id' => 'phs232890',
		'e_value' => '4e-06',
		'bit_score' => '55.1',
		'alignment_length' => '184',
		'identity_percentage' => '28.80',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'RCC4223.10g01830' => array(
		'gene_id' => 'RCC4223.10g01830',
		'e_value' => '6e-06',
		'bit_score' => '54.7',
		'alignment_length' => '142',
		'identity_percentage' => '27.46',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'ATR_00002G01560' => array(
		'gene_id' => 'ATR_00002G01560',
		'e_value' => '7e-06',
		'bit_score' => '53.9',
		'alignment_length' => '202',
		'identity_percentage' => '26.24',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001622',
			'ORTHOFAM' => 'ORTHO03P000612'
		)
	)
)
$similarity_hits_species = array(
	'mus' => array(
		(int) 0 => 'ENSMUSG00000041879',
		(int) 1 => 'ENSMUSG00000042590',
		(int) 2 => 'ENSMUSG00000002718'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000198700',
		(int) 1 => 'ENSG00000086200'
	),
	'drm' => array(
		(int) 0 => 'FBgn0037894',
		(int) 1 => 'FBgn0022213'
	),
	'ppa' => array(
		(int) 0 => 'PP00055G01510',
		(int) 1 => 'PP00203G00190',
		(int) 2 => 'PP00271G00170'
	),
	'ath' => array(
		(int) 0 => 'AT1G26170',
		(int) 1 => 'AT2G31660',
		(int) 2 => 'AT3G59020',
		(int) 3 => 'AT3G08960'
	),
	'atr' => array(
		(int) 0 => 'ATR_00006G02630',
		(int) 1 => 'ATR_00020G00480',
		(int) 2 => 'ATR_00007G01340',
		(int) 3 => 'ATR_00002G01560'
	),
	'cvu' => array(
		(int) 0 => 'CV00G34520',
		(int) 1 => 'CV00G35640',
		(int) 2 => 'CV00G13130'
	),
	'ome' => array(
		(int) 0 => 'OM_08G00960'
	),
	'mpu' => array(
		(int) 0 => 'MP05G01540',
		(int) 1 => 'MP14G03370',
		(int) 2 => 'MP07G02400'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_06G05440',
		(int) 1 => 'MRCC299_15G00130'
	),
	'olu' => array(
		(int) 0 => 'OL08G00950'
	),
	'phs' => array(
		(int) 0 => 'phs51370',
		(int) 1 => 'phs232890'
	),
	'acg' => array(
		(int) 0 => 'AC00G57310',
		(int) 1 => 'AC00G99230',
		(int) 2 => 'AC00G91050'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_08G00970'
	),
	'ota' => array(
		(int) 0 => 'OT_08G01080'
	),
	'osa' => array(
		(int) 0 => 'OS06G16280',
		(int) 1 => 'OS07G49260'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_006G02920'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0279327'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_04G01020'
	),
	'vca' => array(
		(int) 0 => 'VC00G40060',
		(int) 1 => 'VC00G82800'
	),
	'cre' => array(
		(int) 0 => 'CR08G05350',
		(int) 1 => 'CR16G08080'
	),
	'pse3' => array(
		(int) 0 => 'PI00G46670',
		(int) 1 => 'PI00G31840',
		(int) 2 => 'PI00G23940',
		(int) 3 => 'PI00G41570'
	),
	'apr' => array(
		(int) 0 => 'AP00G07420',
		(int) 1 => 'AP00G08020'
	),
	'scp' => array(
		(int) 0 => 'SPAC22H10.03c'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.10g01120',
		(int) 1 => 'RCC4223.10g01830'
	),
	'pte' => array(
		(int) 0 => 'pte619680',
		(int) 1 => 'pte779780',
		(int) 2 => 'pte559390',
		(int) 3 => 'pte633990'
	),
	'esi' => array(
		(int) 0 => 'ES0012G00820',
		(int) 1 => 'ES0039G00710'
	),
	'emh' => array(
		(int) 0 => 'emh128630'
	),
	'sac' => array(
		(int) 0 => 'YGL241W'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G36490',
		(int) 1 => 'HE0000G43030'
	),
	'fcy' => array(
		(int) 0 => 'FC002G07080'
	),
	'cel' => array(
		(int) 0 => 'WBGene00002079'
	)
)
$gene_id = 'ENSMUSG00000041879'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000041879'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OL05G01500'
$gf_placeholder = 'HOM03P005533'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_328G00010',
	'e_value' => '2e-08',
	'bit_score' => '59.7',
	'alignment_length' => '125',
	'identity_percentage' => '31.20',
	'gf' => array(
		'HOMFAM' => 'HOM03P003223',
		'ORTHOFAM' => 'ORTHO03P146466'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_328G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'ENSMUSG00000041879' => array(
			'gene_id' => 'ENSMUSG00000041879',
			'e_value' => '0.0',
			'bit_score' => '2153',
			'alignment_length' => '1041',
			'identity_percentage' => '100.00',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000198700' => array(
			'gene_id' => 'ENSG00000198700',
			'e_value' => '0.0',
			'bit_score' => '2124',
			'alignment_length' => '1042',
			'identity_percentage' => '98.85',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0037894' => array(
			'gene_id' => 'FBgn0037894',
			'e_value' => '0.0',
			'bit_score' => '661',
			'alignment_length' => '1051',
			'identity_percentage' => '36.82',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00055G01510' => array(
			'gene_id' => 'PP00055G01510',
			'e_value' => '1e-149',
			'bit_score' => '480',
			'alignment_length' => '919',
			'identity_percentage' => '32.43',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT1G26170' => array(
			'gene_id' => 'AT1G26170',
			'e_value' => '1e-146',
			'bit_score' => '471',
			'alignment_length' => '1036',
			'identity_percentage' => '28.57',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00006G02630' => array(
			'gene_id' => 'ATR_00006G02630',
			'e_value' => '1e-139',
			'bit_score' => '452',
			'alignment_length' => '1042',
			'identity_percentage' => '29.46',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G34520' => array(
			'gene_id' => 'CV00G34520',
			'e_value' => '7e-121',
			'bit_score' => '400',
			'alignment_length' => '917',
			'identity_percentage' => '31.30',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_08G00960' => array(
			'gene_id' => 'OM_08G00960',
			'e_value' => '1e-112',
			'bit_score' => '380',
			'alignment_length' => '927',
			'identity_percentage' => '28.80',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP05G01540' => array(
			'gene_id' => 'MP05G01540',
			'e_value' => '1e-104',
			'bit_score' => '358',
			'alignment_length' => '980',
			'identity_percentage' => '28.37',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_06G05440' => array(
			'gene_id' => 'MRCC299_06G05440',
			'e_value' => '3e-101',
			'bit_score' => '349',
			'alignment_length' => '985',
			'identity_percentage' => '28.43',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL08G00950' => array(
			'gene_id' => 'OL08G00950',
			'e_value' => '1e-99',
			'bit_score' => '344',
			'alignment_length' => '935',
			'identity_percentage' => '28.45',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs51370' => array(
			'gene_id' => 'phs51370',
			'e_value' => '2e-99',
			'bit_score' => '343',
			'alignment_length' => '969',
			'identity_percentage' => '28.07',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G57310' => array(
			'gene_id' => 'AC00G57310',
			'e_value' => '4e-97',
			'bit_score' => '334',
			'alignment_length' => '865',
			'identity_percentage' => '29.13',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_08G00970' => array(
			'gene_id' => 'ORCC809_08G00970',
			'e_value' => '3e-95',
			'bit_score' => '332',
			'alignment_length' => '909',
			'identity_percentage' => '28.60',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_08G01080' => array(
			'gene_id' => 'OT_08G01080',
			'e_value' => '2e-94',
			'bit_score' => '329',
			'alignment_length' => '936',
			'identity_percentage' => '27.24',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS06G16280' => array(
			'gene_id' => 'OS06G16280',
			'e_value' => '1e-87',
			'bit_score' => '310',
			'alignment_length' => '853',
			'identity_percentage' => '26.85',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_006G02920' => array(
			'gene_id' => 'CNC64A_006G02920',
			'e_value' => '6e-81',
			'bit_score' => '286',
			'alignment_length' => '614',
			'identity_percentage' => '32.25',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0279327' => array(
			'gene_id' => 'DDB_G0279327',
			'e_value' => '2e-73',
			'bit_score' => '268',
			'alignment_length' => '1129',
			'identity_percentage' => '23.74',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_04G01020' => array(
			'gene_id' => 'BPRRCC1105_04G01020',
			'e_value' => '3e-70',
			'bit_score' => '258',
			'alignment_length' => '1001',
			'identity_percentage' => '25.77',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G40060' => array(
			'gene_id' => 'VC00G40060',
			'e_value' => '4e-56',
			'bit_score' => '216',
			'alignment_length' => '1016',
			'identity_percentage' => '24.31',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR08G05350' => array(
			'gene_id' => 'CR08G05350',
			'e_value' => '6e-51',
			'bit_score' => '200',
			'alignment_length' => '731',
			'identity_percentage' => '27.63',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G46670' => array(
			'gene_id' => 'PI00G46670',
			'e_value' => '6e-51',
			'bit_score' => '199',
			'alignment_length' => '1042',
			'identity_percentage' => '23.70',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G07420' => array(
			'gene_id' => 'AP00G07420',
			'e_value' => '3e-50',
			'bit_score' => '198',
			'alignment_length' => '536',
			'identity_percentage' => '28.54',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC22H10.03c' => array(
			'gene_id' => 'SPAC22H10.03c',
			'e_value' => '8e-50',
			'bit_score' => '196',
			'alignment_length' => '912',
			'identity_percentage' => '24.34',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01120' => array(
			'gene_id' => 'RCC4223.10g01120',
			'e_value' => '2e-48',
			'bit_score' => '191',
			'alignment_length' => '1029',
			'identity_percentage' => '22.55',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte619680' => array(
			'gene_id' => 'pte619680',
			'e_value' => '7e-22',
			'bit_score' => '106',
			'alignment_length' => '1037',
			'identity_percentage' => '19.86',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte779780' => array(
			'gene_id' => 'pte779780',
			'e_value' => '3e-20',
			'bit_score' => '101',
			'alignment_length' => '1106',
			'identity_percentage' => '19.26',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0012G00820' => array(
			'gene_id' => 'ES0012G00820',
			'e_value' => '4e-18',
			'bit_score' => '94.4',
			'alignment_length' => '587',
			'identity_percentage' => '23.00',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte559390' => array(
			'gene_id' => 'pte559390',
			'e_value' => '3e-17',
			'bit_score' => '91.7',
			'alignment_length' => '946',
			'identity_percentage' => '19.24',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh128630' => array(
			'gene_id' => 'emh128630',
			'e_value' => '3e-17',
			'bit_score' => '91.3',
			'alignment_length' => '130',
			'identity_percentage' => '40.00',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte633990' => array(
			'gene_id' => 'pte633990',
			'e_value' => '6e-17',
			'bit_score' => '90.5',
			'alignment_length' => '948',
			'identity_percentage' => '19.94',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YGL241W' => array(
			'gene_id' => 'YGL241W',
			'e_value' => '2e-14',
			'bit_score' => '82.4',
			'alignment_length' => '187',
			'identity_percentage' => '31.02',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G36490' => array(
			'gene_id' => 'HE0000G36490',
			'e_value' => '2e-13',
			'bit_score' => '75.1',
			'alignment_length' => '193',
			'identity_percentage' => '27.46',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC002G07080' => array(
			'gene_id' => 'FC002G07080',
			'e_value' => '4e-13',
			'bit_score' => '77.8',
			'alignment_length' => '648',
			'identity_percentage' => '23.46',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00020G00480' => array(
			'gene_id' => 'ATR_00020G00480',
			'e_value' => '5e-11',
			'bit_score' => '71.2',
			'alignment_length' => '590',
			'identity_percentage' => '21.53',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0022213' => array(
			'gene_id' => 'FBgn0022213',
			'e_value' => '4e-10',
			'bit_score' => '68.6',
			'alignment_length' => '144',
			'identity_percentage' => '26.39',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT2G31660' => array(
			'gene_id' => 'AT2G31660',
			'e_value' => '2e-09',
			'bit_score' => '65.9',
			'alignment_length' => '174',
			'identity_percentage' => '24.71',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G35640' => array(
			'gene_id' => 'CV00G35640',
			'e_value' => '3e-09',
			'bit_score' => '65.5',
			'alignment_length' => '154',
			'identity_percentage' => '30.52',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G99230' => array(
			'gene_id' => 'AC00G99230',
			'e_value' => '7e-09',
			'bit_score' => '64.3',
			'alignment_length' => '167',
			'identity_percentage' => '28.14',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00002079' => array(
			'gene_id' => 'WBGene00002079',
			'e_value' => '9e-09',
			'bit_score' => '63.9',
			'alignment_length' => '544',
			'identity_percentage' => '20.40',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_15G00130' => array(
			'gene_id' => 'MRCC299_15G00130',
			'e_value' => '9e-09',
			'bit_score' => '63.9',
			'alignment_length' => '170',
			'identity_percentage' => '30.00',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G43030' => array(
			'gene_id' => 'HE0000G43030',
			'e_value' => '1e-08',
			'bit_score' => '60.8',
			'alignment_length' => '152',
			'identity_percentage' => '30.92',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_328G00010' => array(
			'gene_id' => 'CNC64A_328G00010',
			'e_value' => '2e-08',
			'bit_score' => '59.7',
			'alignment_length' => '125',
			'identity_percentage' => '31.20',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G59020' => array(
			'gene_id' => 'AT3G59020',
			'e_value' => '2e-08',
			'bit_score' => '62.8',
			'alignment_length' => '583',
			'identity_percentage' => '19.04',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0039G00710' => array(
			'gene_id' => 'ES0039G00710',
			'e_value' => '2e-08',
			'bit_score' => '62.8',
			'alignment_length' => '126',
			'identity_percentage' => '34.13',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT3G08960' => array(
			'gene_id' => 'AT3G08960',
			'e_value' => '4e-08',
			'bit_score' => '62.0',
			'alignment_length' => '178',
			'identity_percentage' => '26.97',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP14G03370' => array(
			'gene_id' => 'MP14G03370',
			'e_value' => '6e-08',
			'bit_score' => '61.2',
			'alignment_length' => '154',
			'identity_percentage' => '27.92',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G31840' => array(
			'gene_id' => 'PI00G31840',
			'e_value' => '7e-08',
			'bit_score' => '60.8',
			'alignment_length' => '131',
			'identity_percentage' => '29.01',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00203G00190' => array(
			'gene_id' => 'PP00203G00190',
			'e_value' => '7e-08',
			'bit_score' => '60.8',
			'alignment_length' => '152',
			'identity_percentage' => '27.63',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000086200' => array(
			'gene_id' => 'ENSG00000086200',
			'e_value' => '7e-08',
			'bit_score' => '60.8',
			'alignment_length' => '589',
			'identity_percentage' => '18.85',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G08020' => array(
			'gene_id' => 'AP00G08020',
			'e_value' => '8e-08',
			'bit_score' => '60.8',
			'alignment_length' => '474',
			'identity_percentage' => '23.21',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G82800' => array(
			'gene_id' => 'VC00G82800',
			'e_value' => '8e-08',
			'bit_score' => '60.5',
			'alignment_length' => '141',
			'identity_percentage' => '30.50',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP07G02400' => array(
			'gene_id' => 'MP07G02400',
			'e_value' => '8e-08',
			'bit_score' => '60.5',
			'alignment_length' => '354',
			'identity_percentage' => '22.03',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G23940' => array(
			'gene_id' => 'PI00G23940',
			'e_value' => '9e-08',
			'bit_score' => '60.5',
			'alignment_length' => '598',
			'identity_percentage' => '19.73',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G91050' => array(
			'gene_id' => 'AC00G91050',
			'e_value' => '1e-07',
			'bit_score' => '60.1',
			'alignment_length' => '177',
			'identity_percentage' => '29.38',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00271G00170' => array(
			'gene_id' => 'PP00271G00170',
			'e_value' => '1e-07',
			'bit_score' => '60.1',
			'alignment_length' => '154',
			'identity_percentage' => '26.62',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G13130' => array(
			'gene_id' => 'CV00G13130',
			'e_value' => '2e-07',
			'bit_score' => '59.7',
			'alignment_length' => '179',
			'identity_percentage' => '25.70',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000042590' => array(
			'gene_id' => 'ENSMUSG00000042590',
			'e_value' => '2e-07',
			'bit_score' => '59.3',
			'alignment_length' => '589',
			'identity_percentage' => '18.85',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00007G01340' => array(
			'gene_id' => 'ATR_00007G01340',
			'e_value' => '5e-07',
			'bit_score' => '58.2',
			'alignment_length' => '160',
			'identity_percentage' => '28.12',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS07G49260' => array(
			'gene_id' => 'OS07G49260',
			'e_value' => '7e-07',
			'bit_score' => '57.8',
			'alignment_length' => '157',
			'identity_percentage' => '28.03',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR16G08080' => array(
			'gene_id' => 'CR16G08080',
			'e_value' => '1e-06',
			'bit_score' => '56.6',
			'alignment_length' => '149',
			'identity_percentage' => '28.86',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G41570' => array(
			'gene_id' => 'PI00G41570',
			'e_value' => '2e-06',
			'bit_score' => '55.8',
			'alignment_length' => '142',
			'identity_percentage' => '27.46',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000002718' => array(
			'gene_id' => 'ENSMUSG00000002718',
			'e_value' => '3e-06',
			'bit_score' => '55.5',
			'alignment_length' => '146',
			'identity_percentage' => '23.97',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs232890' => array(
			'gene_id' => 'phs232890',
			'e_value' => '4e-06',
			'bit_score' => '55.1',
			'alignment_length' => '184',
			'identity_percentage' => '28.80',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.10g01830' => array(
			'gene_id' => 'RCC4223.10g01830',
			'e_value' => '6e-06',
			'bit_score' => '54.7',
			'alignment_length' => '142',
			'identity_percentage' => '27.46',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00002G01560' => array(
			'gene_id' => 'ATR_00002G01560',
			'e_value' => '7e-06',
			'bit_score' => '53.9',
			'alignment_length' => '202',
			'identity_percentage' => '26.24',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'mus' => array(
			(int) 0 => 'ENSMUSG00000041879',
			(int) 1 => 'ENSMUSG00000042590',
			(int) 2 => 'ENSMUSG00000002718'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000198700',
			(int) 1 => 'ENSG00000086200'
		),
		'drm' => array(
			(int) 0 => 'FBgn0037894',
			(int) 1 => 'FBgn0022213'
		),
		'ppa' => array(
			(int) 0 => 'PP00055G01510',
			(int) 1 => 'PP00203G00190',
			(int) 2 => 'PP00271G00170'
		),
		'ath' => array(
			(int) 0 => 'AT1G26170',
			(int) 1 => 'AT2G31660',
			(int) 2 => 'AT3G59020',
			(int) 3 => 'AT3G08960'
		),
		'atr' => array(
			(int) 0 => 'ATR_00006G02630',
			(int) 1 => 'ATR_00020G00480',
			(int) 2 => 'ATR_00007G01340',
			(int) 3 => 'ATR_00002G01560'
		),
		'cvu' => array(
			(int) 0 => 'CV00G34520',
			(int) 1 => 'CV00G35640',
			(int) 2 => 'CV00G13130'
		),
		'ome' => array(
			(int) 0 => 'OM_08G00960'
		),
		'mpu' => array(
			(int) 0 => 'MP05G01540',
			(int) 1 => 'MP14G03370',
			(int) 2 => 'MP07G02400'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_06G05440',
			(int) 1 => 'MRCC299_15G00130'
		),
		'olu' => array(
			(int) 0 => 'OL08G00950'
		),
		'phs' => array(
			(int) 0 => 'phs51370',
			(int) 1 => 'phs232890'
		),
		'acg' => array(
			(int) 0 => 'AC00G57310',
			(int) 1 => 'AC00G99230',
			(int) 2 => 'AC00G91050'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_08G00970'
		),
		'ota' => array(
			(int) 0 => 'OT_08G01080'
		),
		'osa' => array(
			(int) 0 => 'OS06G16280',
			(int) 1 => 'OS07G49260'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_006G02920'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0279327'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_04G01020'
		),
		'vca' => array(
			(int) 0 => 'VC00G40060',
			(int) 1 => 'VC00G82800'
		),
		'cre' => array(
			(int) 0 => 'CR08G05350',
			(int) 1 => 'CR16G08080'
		),
		'pse3' => array(
			(int) 0 => 'PI00G46670',
			(int) 1 => 'PI00G31840',
			(int) 2 => 'PI00G23940',
			(int) 3 => 'PI00G41570'
		),
		'apr' => array(
			(int) 0 => 'AP00G07420',
			(int) 1 => 'AP00G08020'
		),
		'scp' => array(
			(int) 0 => 'SPAC22H10.03c'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.10g01120',
			(int) 1 => 'RCC4223.10g01830'
		),
		'pte' => array(
			(int) 0 => 'pte619680',
			(int) 1 => 'pte779780',
			(int) 2 => 'pte559390',
			(int) 3 => 'pte633990'
		),
		'esi' => array(
			(int) 0 => 'ES0012G00820',
			(int) 1 => 'ES0039G00710'
		),
		'emh' => array(
			(int) 0 => 'emh128630'
		),
		'sac' => array(
			(int) 0 => 'YGL241W'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G36490',
			(int) 1 => 'HE0000G43030'
		),
		'fcy' => array(
			(int) 0 => 'FC002G07080'
		),
		'cel' => array(
			(int) 0 => 'WBGene00002079'
		)
	),
	'gene_id' => 'ENSMUSG00000041879',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'ENSMUSG00000041879',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'OL05G01500',
	'gf_placeholder' => 'HOM03P005533',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'ENSMUSG00000041879' => array(
		'gene_id' => 'ENSMUSG00000041879',
		'e_value' => '0.0',
		'bit_score' => '2153',
		'alignment_length' => '1041',
		'identity_percentage' => '100.00',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'ENSG00000198700' => array(
		'gene_id' => 'ENSG00000198700',
		'e_value' => '0.0',
		'bit_score' => '2124',
		'alignment_length' => '1042',
		'identity_percentage' => '98.85',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'FBgn0037894' => array(
		'gene_id' => 'FBgn0037894',
		'e_value' => '0.0',
		'bit_score' => '661',
		'alignment_length' => '1051',
		'identity_percentage' => '36.82',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'PP00055G01510' => array(
		'gene_id' => 'PP00055G01510',
		'e_value' => '1e-149',
		'bit_score' => '480',
		'alignment_length' => '919',
		'identity_percentage' => '32.43',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'AT1G26170' => array(
		'gene_id' => 'AT1G26170',
		'e_value' => '1e-146',
		'bit_score' => '471',
		'alignment_length' => '1036',
		'identity_percentage' => '28.57',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'ATR_00006G02630' => array(
		'gene_id' => 'ATR_00006G02630',
		'e_value' => '1e-139',
		'bit_score' => '452',
		'alignment_length' => '1042',
		'identity_percentage' => '29.46',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'CV00G34520' => array(
		'gene_id' => 'CV00G34520',
		'e_value' => '7e-121',
		'bit_score' => '400',
		'alignment_length' => '917',
		'identity_percentage' => '31.30',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OM_08G00960' => array(
		'gene_id' => 'OM_08G00960',
		'e_value' => '1e-112',
		'bit_score' => '380',
		'alignment_length' => '927',
		'identity_percentage' => '28.80',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'MP05G01540' => array(
		'gene_id' => 'MP05G01540',
		'e_value' => '1e-104',
		'bit_score' => '358',
		'alignment_length' => '980',
		'identity_percentage' => '28.37',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'MRCC299_06G05440' => array(
		'gene_id' => 'MRCC299_06G05440',
		'e_value' => '3e-101',
		'bit_score' => '349',
		'alignment_length' => '985',
		'identity_percentage' => '28.43',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OL08G00950' => array(
		'gene_id' => 'OL08G00950',
		'e_value' => '1e-99',
		'bit_score' => '344',
		'alignment_length' => '935',
		'identity_percentage' => '28.45',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'phs51370' => array(
		'gene_id' => 'phs51370',
		'e_value' => '2e-99',
		'bit_score' => '343',
		'alignment_length' => '969',
		'identity_percentage' => '28.07',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'AC00G57310' => array(
		'gene_id' => 'AC00G57310',
		'e_value' => '4e-97',
		'bit_score' => '334',
		'alignment_length' => '865',
		'identity_percentage' => '29.13',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'ORCC809_08G00970' => array(
		'gene_id' => 'ORCC809_08G00970',
		'e_value' => '3e-95',
		'bit_score' => '332',
		'alignment_length' => '909',
		'identity_percentage' => '28.60',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OT_08G01080' => array(
		'gene_id' => 'OT_08G01080',
		'e_value' => '2e-94',
		'bit_score' => '329',
		'alignment_length' => '936',
		'identity_percentage' => '27.24',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'OS06G16280' => array(
		'gene_id' => 'OS06G16280',
		'e_value' => '1e-87',
		'bit_score' => '310',
		'alignment_length' => '853',
		'identity_percentage' => '26.85',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'CNC64A_006G02920' => array(
		'gene_id' => 'CNC64A_006G02920',
		'e_value' => '6e-81',
		'bit_score' => '286',
		'alignment_length' => '614',
		'identity_percentage' => '32.25',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'DDB_G0279327' => array(
		'gene_id' => 'DDB_G0279327',
		'e_value' => '2e-73',
		'bit_score' => '268',
		'alignment_length' => '1129',
		'identity_percentage' => '23.74',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'BPRRCC1105_04G01020' => array(
		'gene_id' => 'BPRRCC1105_04G01020',
		'e_value' => '3e-70',
		'bit_score' => '258',
		'alignment_length' => '1001',
		'identity_percentage' => '25.77',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'VC00G40060' => array(
		'gene_id' => 'VC00G40060',
		'e_value' => '4e-56',
		'bit_score' => '216',
		'alignment_length' => '1016',
		'identity_percentage' => '24.31',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'CR08G05350' => array(
		'gene_id' => 'CR08G05350',
		'e_value' => '6e-51',
		'bit_score' => '200',
		'alignment_length' => '731',
		'identity_percentage' => '27.63',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'PI00G46670' => array(
		'gene_id' => 'PI00G46670',
		'e_value' => '6e-51',
		'bit_score' => '199',
		'alignment_length' => '1042',
		'identity_percentage' => '23.70',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'AP00G07420' => array(
		'gene_id' => 'AP00G07420',
		'e_value' => '3e-50',
		'bit_score' => '198',
		'alignment_length' => '536',
		'identity_percentage' => '28.54',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'SPAC22H10.03c' => array(
		'gene_id' => 'SPAC22H10.03c',
		'e_value' => '8e-50',
		'bit_score' => '196',
		'alignment_length' => '912',
		'identity_percentage' => '24.34',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'RCC4223.10g01120' => array(
		'gene_id' => 'RCC4223.10g01120',
		'e_value' => '2e-48',
		'bit_score' => '191',
		'alignment_length' => '1029',
		'identity_percentage' => '22.55',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'pte619680' => array(
		'gene_id' => 'pte619680',
		'e_value' => '7e-22',
		'bit_score' => '106',
		'alignment_length' => '1037',
		'identity_percentage' => '19.86',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'pte779780' => array(
		'gene_id' => 'pte779780',
		'e_value' => '3e-20',
		'bit_score' => '101',
		'alignment_length' => '1106',
		'identity_percentage' => '19.26',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'ES0012G00820' => array(
		'gene_id' => 'ES0012G00820',
		'e_value' => '4e-18',
		'bit_score' => '94.4',
		'alignment_length' => '587',
		'identity_percentage' => '23.00',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'pte559390' => array(
		'gene_id' => 'pte559390',
		'e_value' => '3e-17',
		'bit_score' => '91.7',
		'alignment_length' => '946',
		'identity_percentage' => '19.24',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'emh128630' => array(
		'gene_id' => 'emh128630',
		'e_value' => '3e-17',
		'bit_score' => '91.3',
		'alignment_length' => '130',
		'identity_percentage' => '40.00',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P002045'
		)
	),
	'pte633990' => array(
		'gene_id' => 'pte633990',
		'e_value' => '6e-17',
		'bit_score' => '90.5',
		'alignment_length' => '948',
		'identity_percentage' => '19.94',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P016924',
			'ORTHOFAM' => 'ORTHO03P024426'
		)
	),
	'YGL241W' => array(
		'gene_id' => 'YGL241W',
		'e_value' => '2e-14',
		'bit_score' => '82.4',
		'alignment_length' => '187',
		'identity_percentage' => '31.02',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'HE0000G36490' => array(
		'gene_id' => 'HE0000G36490',
		'e_value' => '2e-13',
		'bit_score' => '75.1',
		'alignment_length' => '193',
		'identity_percentage' => '27.46',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P003003'
		)
	),
	'FC002G07080' => array(
		'gene_id' => 'FC002G07080',
		'e_value' => '4e-13',
		'bit_score' => '77.8',
		'alignment_length' => '648',
		'identity_percentage' => '23.46',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'ATR_00020G00480' => array(
		'gene_id' => 'ATR_00020G00480',
		'e_value' => '5e-11',
		'bit_score' => '71.2',
		'alignment_length' => '590',
		'identity_percentage' => '21.53',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'FBgn0022213' => array(
		'gene_id' => 'FBgn0022213',
		'e_value' => '4e-10',
		'bit_score' => '68.6',
		'alignment_length' => '144',
		'identity_percentage' => '26.39',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'AT2G31660' => array(
		'gene_id' => 'AT2G31660',
		'e_value' => '2e-09',
		'bit_score' => '65.9',
		'alignment_length' => '174',
		'identity_percentage' => '24.71',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'CV00G35640' => array(
		'gene_id' => 'CV00G35640',
		'e_value' => '3e-09',
		'bit_score' => '65.5',
		'alignment_length' => '154',
		'identity_percentage' => '30.52',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'AC00G99230' => array(
		'gene_id' => 'AC00G99230',
		'e_value' => '7e-09',
		'bit_score' => '64.3',
		'alignment_length' => '167',
		'identity_percentage' => '28.14',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'WBGene00002079' => array(
		'gene_id' => 'WBGene00002079',
		'e_value' => '9e-09',
		'bit_score' => '63.9',
		'alignment_length' => '544',
		'identity_percentage' => '20.40',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'MRCC299_15G00130' => array(
		'gene_id' => 'MRCC299_15G00130',
		'e_value' => '9e-09',
		'bit_score' => '63.9',
		'alignment_length' => '170',
		'identity_percentage' => '30.00',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'HE0000G43030' => array(
		'gene_id' => 'HE0000G43030',
		'e_value' => '1e-08',
		'bit_score' => '60.8',
		'alignment_length' => '152',
		'identity_percentage' => '30.92',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'CNC64A_328G00010' => array(
		'gene_id' => 'CNC64A_328G00010',
		'e_value' => '2e-08',
		'bit_score' => '59.7',
		'alignment_length' => '125',
		'identity_percentage' => '31.20',
		'gf' => array(
			'HOMFAM' => 'HOM03P003223',
			'ORTHOFAM' => 'ORTHO03P146466'
		)
	),
	'AT3G59020' => array(
		'gene_id' => 'AT3G59020',
		'e_value' => '2e-08',
		'bit_score' => '62.8',
		'alignment_length' => '583',
		'identity_percentage' => '19.04',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'ES0039G00710' => array(
		'gene_id' => 'ES0039G00710',
		'e_value' => '2e-08',
		'bit_score' => '62.8',
		'alignment_length' => '126',
		'identity_percentage' => '34.13',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'AT3G08960' => array(
		'gene_id' => 'AT3G08960',
		'e_value' => '4e-08',
		'bit_score' => '62.0',
		'alignment_length' => '178',
		'identity_percentage' => '26.97',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'MP14G03370' => array(
		'gene_id' => 'MP14G03370',
		'e_value' => '6e-08',
		'bit_score' => '61.2',
		'alignment_length' => '154',
		'identity_percentage' => '27.92',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'PI00G31840' => array(
		'gene_id' => 'PI00G31840',
		'e_value' => '7e-08',
		'bit_score' => '60.8',
		'alignment_length' => '131',
		'identity_percentage' => '29.01',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'PP00203G00190' => array(
		'gene_id' => 'PP00203G00190',
		'e_value' => '7e-08',
		'bit_score' => '60.8',
		'alignment_length' => '152',
		'identity_percentage' => '27.63',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'ENSG00000086200' => array(
		'gene_id' => 'ENSG00000086200',
		'e_value' => '7e-08',
		'bit_score' => '60.8',
		'alignment_length' => '589',
		'identity_percentage' => '18.85',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'AP00G08020' => array(
		'gene_id' => 'AP00G08020',
		'e_value' => '8e-08',
		'bit_score' => '60.8',
		'alignment_length' => '474',
		'identity_percentage' => '23.21',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'VC00G82800' => array(
		'gene_id' => 'VC00G82800',
		'e_value' => '8e-08',
		'bit_score' => '60.5',
		'alignment_length' => '141',
		'identity_percentage' => '30.50',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'MP07G02400' => array(
		'gene_id' => 'MP07G02400',
		'e_value' => '8e-08',
		'bit_score' => '60.5',
		'alignment_length' => '354',
		'identity_percentage' => '22.03',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P001622',
			'ORTHOFAM' => 'ORTHO03P000612'
		)
	),
	'PI00G23940' => array(
		'gene_id' => 'PI00G23940',
		'e_value' => '9e-08',
		'bit_score' => '60.5',
		'alignment_length' => '598',
		'identity_percentage' => '19.73',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'AC00G91050' => array(
		'gene_id' => 'AC00G91050',
		'e_value' => '1e-07',
		'bit_score' => '60.1',
		'alignment_length' => '177',
		'identity_percentage' => '29.38',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'PP00271G00170' => array(
		'gene_id' => 'PP00271G00170',
		'e_value' => '1e-07',
		'bit_score' => '60.1',
		'alignment_length' => '154',
		'identity_percentage' => '26.62',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'CV00G13130' => array(
		'gene_id' => 'CV00G13130',
		'e_value' => '2e-07',
		'bit_score' => '59.7',
		'alignment_length' => '179',
		'identity_percentage' => '25.70',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'ENSMUSG00000042590' => array(
		'gene_id' => 'ENSMUSG00000042590',
		'e_value' => '2e-07',
		'bit_score' => '59.3',
		'alignment_length' => '589',
		'identity_percentage' => '18.85',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'ATR_00007G01340' => array(
		'gene_id' => 'ATR_00007G01340',
		'e_value' => '5e-07',
		'bit_score' => '58.2',
		'alignment_length' => '160',
		'identity_percentage' => '28.12',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'OS07G49260' => array(
		'gene_id' => 'OS07G49260',
		'e_value' => '7e-07',
		'bit_score' => '57.8',
		'alignment_length' => '157',
		'identity_percentage' => '28.03',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P003228',
			'ORTHOFAM' => 'ORTHO03P003197'
		)
	),
	'CR16G08080' => array(
		'gene_id' => 'CR16G08080',
		'e_value' => '1e-06',
		'bit_score' => '56.6',
		'alignment_length' => '149',
		'identity_percentage' => '28.86',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'PI00G41570' => array(
		'gene_id' => 'PI00G41570',
		'e_value' => '2e-06',
		'bit_score' => '55.8',
		'alignment_length' => '142',
		'identity_percentage' => '27.46',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'ENSMUSG00000002718' => array(
		'gene_id' => 'ENSMUSG00000002718',
		'e_value' => '3e-06',
		'bit_score' => '55.5',
		'alignment_length' => '146',
		'identity_percentage' => '23.97',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'phs232890' => array(
		'gene_id' => 'phs232890',
		'e_value' => '4e-06',
		'bit_score' => '55.1',
		'alignment_length' => '184',
		'identity_percentage' => '28.80',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P001650',
			'ORTHOFAM' => 'ORTHO03P000810'
		)
	),
	'RCC4223.10g01830' => array(
		'gene_id' => 'RCC4223.10g01830',
		'e_value' => '6e-06',
		'bit_score' => '54.7',
		'alignment_length' => '142',
		'identity_percentage' => '27.46',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P001981',
			'ORTHOFAM' => 'ORTHO03P001194'
		)
	),
	'ATR_00002G01560' => array(
		'gene_id' => 'ATR_00002G01560',
		'e_value' => '7e-06',
		'bit_score' => '53.9',
		'alignment_length' => '202',
		'identity_percentage' => '26.24',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001622',
			'ORTHOFAM' => 'ORTHO03P000612'
		)
	)
)
$similarity_hits_species = array(
	'mus' => array(
		(int) 0 => 'ENSMUSG00000041879',
		(int) 1 => 'ENSMUSG00000042590',
		(int) 2 => 'ENSMUSG00000002718'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000198700',
		(int) 1 => 'ENSG00000086200'
	),
	'drm' => array(
		(int) 0 => 'FBgn0037894',
		(int) 1 => 'FBgn0022213'
	),
	'ppa' => array(
		(int) 0 => 'PP00055G01510',
		(int) 1 => 'PP00203G00190',
		(int) 2 => 'PP00271G00170'
	),
	'ath' => array(
		(int) 0 => 'AT1G26170',
		(int) 1 => 'AT2G31660',
		(int) 2 => 'AT3G59020',
		(int) 3 => 'AT3G08960'
	),
	'atr' => array(
		(int) 0 => 'ATR_00006G02630',
		(int) 1 => 'ATR_00020G00480',
		(int) 2 => 'ATR_00007G01340',
		(int) 3 => 'ATR_00002G01560'
	),
	'cvu' => array(
		(int) 0 => 'CV00G34520',
		(int) 1 => 'CV00G35640',
		(int) 2 => 'CV00G13130'
	),
	'ome' => array(
		(int) 0 => 'OM_08G00960'
	),
	'mpu' => array(
		(int) 0 => 'MP05G01540',
		(int) 1 => 'MP14G03370',
		(int) 2 => 'MP07G02400'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_06G05440',
		(int) 1 => 'MRCC299_15G00130'
	),
	'olu' => array(
		(int) 0 => 'OL08G00950'
	),
	'phs' => array(
		(int) 0 => 'phs51370',
		(int) 1 => 'phs232890'
	),
	'acg' => array(
		(int) 0 => 'AC00G57310',
		(int) 1 => 'AC00G99230',
		(int) 2 => 'AC00G91050'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_08G00970'
	),
	'ota' => array(
		(int) 0 => 'OT_08G01080'
	),
	'osa' => array(
		(int) 0 => 'OS06G16280',
		(int) 1 => 'OS07G49260'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_006G02920'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0279327'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_04G01020'
	),
	'vca' => array(
		(int) 0 => 'VC00G40060',
		(int) 1 => 'VC00G82800'
	),
	'cre' => array(
		(int) 0 => 'CR08G05350',
		(int) 1 => 'CR16G08080'
	),
	'pse3' => array(
		(int) 0 => 'PI00G46670',
		(int) 1 => 'PI00G31840',
		(int) 2 => 'PI00G23940',
		(int) 3 => 'PI00G41570'
	),
	'apr' => array(
		(int) 0 => 'AP00G07420',
		(int) 1 => 'AP00G08020'
	),
	'scp' => array(
		(int) 0 => 'SPAC22H10.03c'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.10g01120',
		(int) 1 => 'RCC4223.10g01830'
	),
	'pte' => array(
		(int) 0 => 'pte619680',
		(int) 1 => 'pte779780',
		(int) 2 => 'pte559390',
		(int) 3 => 'pte633990'
	),
	'esi' => array(
		(int) 0 => 'ES0012G00820',
		(int) 1 => 'ES0039G00710'
	),
	'emh' => array(
		(int) 0 => 'emh128630'
	),
	'sac' => array(
		(int) 0 => 'YGL241W'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G36490',
		(int) 1 => 'HE0000G43030'
	),
	'fcy' => array(
		(int) 0 => 'FC002G07080'
	),
	'cel' => array(
		(int) 0 => 'WBGene00002079'
	)
)
$gene_id = 'ENSMUSG00000041879'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000041879'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OL05G01500'
$gf_placeholder = 'HOM03P005533'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_328G00010',
	'e_value' => '2e-08',
	'bit_score' => '59.7',
	'alignment_length' => '125',
	'identity_percentage' => '31.20',
	'gf' => array(
		'HOMFAM' => 'HOM03P003223',
		'ORTHOFAM' => 'ORTHO03P146466'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_328G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ENSMUSG00000041879	Mus musculus	0.0	2153	1041	100.00
ENSG00000198700	Homo sapiens	0.0	2124	1042	98.85
FBgn0037894	Drosophila melanogaster	0.0	661	1051	36.82
PP00055G01510	Physcomitrella patens	1e-149	480	919	32.43
AT1G26170	Arabidopsis thaliana	1e-146	471	1036	28.57
ATR_00006G02630	Amborella trichopoda	1e-139	452	1042	29.46
CV00G34520	Coccomyxa subellipsoidea C-169	7e-121	400	917	31.30
OM_08G00960	Ostreococcus mediterraneus	1e-112	380	927	28.80
MP05G01540	Micromonas pusilla strain CCMP1545	1e-104	358	980	28.37
MRCC299_06G05440	Micromonas sp RCC299	3e-101	349	985	28.43
OL08G00950	Ostreococcus lucimarinus	1e-99	344	935	28.45
phs51370	Phytophtora sojae	2e-99	343	969	28.07
AC00G57310	Asterochloris sp. Cgr-DA1pho v2.0	4e-97	334	865	29.13
ORCC809_08G00970	Ostreococcus sp RCC809	3e-95	332	909	28.60
OT_08G01080	Ostreococcus tauri	2e-94	329	936	27.24
OS06G16280	Oryza sativa	1e-87	310	853	26.85
CNC64A_006G02920	Chlorella sp NC64A	6e-81	286	614	32.25
DDB_G0279327	Dictyostelium discoideum	2e-73	268	1129	23.74
BPRRCC1105_04G01020	Bathycoccus prasinos	3e-70	258	1001	25.77
VC00G40060	Volvox carteri	4e-56	216	1016	24.31
CR08G05350	Chlamydomonas reinhardtii	6e-51	200	731	27.63
PI00G46670	Picochlorum sp. SENEW3 (SE3)	6e-51	199	1042	23.70
AP00G07420	Auxenochlorella protothecoides	3e-50	198	536	28.54
SPAC22H10.03c	Schizosaccharomyces pombe	8e-50	196	912	24.34
RCC4223.10g01120	Picochlorum_RCC4223	2e-48	191	1029	22.55
pte619680	Paramecium tetraurelia	7e-22	106	1037	19.86
pte779780	Paramecium tetraurelia	3e-20	101	1106	19.26
ES0012G00820	Ectocarpus siliculosus	4e-18	94.4	587	23.00
pte559390	Paramecium tetraurelia	3e-17	91.7	946	19.24
emh128630	Emiliania huxleyi	3e-17	91.3	130	40.00
pte633990	Paramecium tetraurelia	6e-17	90.5	948	19.94
YGL241W	Saccharomyces cerevisiae strain S288C	2e-14	82.4	187	31.02
HE0000G36490	Helicosporidium sp.	2e-13	75.1	193	27.46
FC002G07080	Fragilariopsis cylindrus	4e-13	77.8	648	23.46
ATR_00020G00480	Amborella trichopoda	5e-11	71.2	590	21.53
FBgn0022213	Drosophila melanogaster	4e-10	68.6	144	26.39
AT2G31660	Arabidopsis thaliana	2e-09	65.9	174	24.71
CV00G35640	Coccomyxa subellipsoidea C-169	3e-09	65.5	154	30.52
AC00G99230	Asterochloris sp. Cgr-DA1pho v2.0	7e-09	64.3	167	28.14
WBGene00002079	Caenorhabditis elegans	9e-09	63.9	544	20.40
MRCC299_15G00130	Micromonas sp RCC299	9e-09	63.9	170	30.00
HE0000G43030	Helicosporidium sp.	1e-08	60.8	152	30.92
CNC64A_328G00010		2e-08	59.7	125	31.20
AT3G59020	Arabidopsis thaliana	2e-08	62.8	583	19.04
ES0039G00710	Ectocarpus siliculosus	2e-08	62.8	126	34.13
AT3G08960	Arabidopsis thaliana	4e-08	62.0	178	26.97
MP14G03370	Micromonas pusilla strain CCMP1545	6e-08	61.2	154	27.92
PI00G31840	Picochlorum sp. SENEW3 (SE3)	7e-08	60.8	131	29.01
PP00203G00190	Physcomitrella patens	7e-08	60.8	152	27.63
ENSG00000086200	Homo sapiens	7e-08	60.8	589	18.85
AP00G08020	Auxenochlorella protothecoides	8e-08	60.8	474	23.21
VC00G82800	Volvox carteri	8e-08	60.5	141	30.50
MP07G02400	Micromonas pusilla strain CCMP1545	8e-08	60.5	354	22.03
PI00G23940	Picochlorum sp. SENEW3 (SE3)	9e-08	60.5	598	19.73
AC00G91050	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	60.1	177	29.38
PP00271G00170	Physcomitrella patens	1e-07	60.1	154	26.62
CV00G13130	Coccomyxa subellipsoidea C-169	2e-07	59.7	179	25.70
ENSMUSG00000042590	Mus musculus	2e-07	59.3	589	18.85
ATR_00007G01340	Amborella trichopoda	5e-07	58.2	160	28.12
OS07G49260	Oryza sativa	7e-07	57.8	157	28.03
CR16G08080	Chlamydomonas reinhardtii	1e-06	56.6	149	28.86
PI00G41570	Picochlorum sp. SENEW3 (SE3)	2e-06	55.8	142	27.46
ENSMUSG00000002718	Mus musculus	3e-06	55.5	146	23.97
phs232890	Phytophtora sojae	4e-06	55.1	184	28.80
RCC4223.10g01830	Picochlorum_RCC4223	6e-06	54.7	142	27.46
ATR_00002G01560	Amborella trichopoda	7e-06	53.9	202	26.24

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment