|
CNC64A_201G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '921',
'alignment_length' => '442',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '6e-97',
'bit_score' => '305',
'alignment_length' => '373',
'identity_percentage' => '43.43',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '6e-71',
'bit_score' => '242',
'alignment_length' => '397',
'identity_percentage' => '37.03',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '1e-69',
'bit_score' => '235',
'alignment_length' => '358',
'identity_percentage' => '39.11',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-68',
'bit_score' => '226',
'alignment_length' => '339',
'identity_percentage' => '38.35',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '1e-67',
'bit_score' => '224',
'alignment_length' => '330',
'identity_percentage' => '39.70',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '3e-67',
'bit_score' => '227',
'alignment_length' => '365',
'identity_percentage' => '36.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '9e-66',
'bit_score' => '219',
'alignment_length' => '335',
'identity_percentage' => '39.40',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '9e-66',
'bit_score' => '222',
'alignment_length' => '387',
'identity_percentage' => '35.92',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '9e-66',
'bit_score' => '225',
'alignment_length' => '435',
'identity_percentage' => '34.25',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '3e-63',
'bit_score' => '217',
'alignment_length' => '417',
'identity_percentage' => '34.77',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '4e-63',
'bit_score' => '216',
'alignment_length' => '437',
'identity_percentage' => '33.18',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '4e-62',
'bit_score' => '221',
'alignment_length' => '342',
'identity_percentage' => '37.43',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-57',
'bit_score' => '205',
'alignment_length' => '381',
'identity_percentage' => '35.17',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '6e-56',
'bit_score' => '197',
'alignment_length' => '379',
'identity_percentage' => '34.83',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '3e-52',
'bit_score' => '187',
'alignment_length' => '338',
'identity_percentage' => '34.91',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '3e-50',
'bit_score' => '187',
'alignment_length' => '346',
'identity_percentage' => '34.39',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '4e-49',
'bit_score' => '177',
'alignment_length' => '361',
'identity_percentage' => '33.52',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '1e-47',
'bit_score' => '177',
'alignment_length' => '359',
'identity_percentage' => '31.48',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '1e-41',
'bit_score' => '153',
'alignment_length' => '257',
'identity_percentage' => '35.80',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '1e-40',
'bit_score' => '154',
'alignment_length' => '350',
'identity_percentage' => '30.57',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '1e-37',
'bit_score' => '144',
'alignment_length' => '337',
'identity_percentage' => '32.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '6e-36',
'bit_score' => '143',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '7e-36',
'bit_score' => '142',
'alignment_length' => '385',
'identity_percentage' => '30.13',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '2e-34',
'bit_score' => '137',
'alignment_length' => '391',
'identity_percentage' => '27.37',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '3e-34',
'bit_score' => '135',
'alignment_length' => '343',
'identity_percentage' => '28.86',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-34',
'bit_score' => '137',
'alignment_length' => '187',
'identity_percentage' => '40.11',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '2e-33',
'bit_score' => '135',
'alignment_length' => '167',
'identity_percentage' => '39.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '2e-33',
'bit_score' => '133',
'alignment_length' => '389',
'identity_percentage' => '27.76',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '4e-33',
'bit_score' => '135',
'alignment_length' => '201',
'identity_percentage' => '34.33',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '3e-32',
'bit_score' => '131',
'alignment_length' => '179',
'identity_percentage' => '36.31',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '210',
'identity_percentage' => '33.33',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '5e-31',
'bit_score' => '128',
'alignment_length' => '201',
'identity_percentage' => '36.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '7e-31',
'bit_score' => '130',
'alignment_length' => '242',
'identity_percentage' => '32.23',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '3e-30',
'bit_score' => '126',
'alignment_length' => '182',
'identity_percentage' => '37.36',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '3e-30',
'bit_score' => '125',
'alignment_length' => '363',
'identity_percentage' => '25.07',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '4e-30',
'bit_score' => '125',
'alignment_length' => '178',
'identity_percentage' => '37.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '6e-28',
'bit_score' => '116',
'alignment_length' => '299',
'identity_percentage' => '29.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '8e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.34',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '2e-22',
'bit_score' => '104',
'alignment_length' => '182',
'identity_percentage' => '34.07',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '3e-21',
'bit_score' => '98.6',
'alignment_length' => '302',
'identity_percentage' => '27.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '7e-21',
'bit_score' => '99.4',
'alignment_length' => '199',
'identity_percentage' => '29.65',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '3e-20',
'bit_score' => '97.4',
'alignment_length' => '213',
'identity_percentage' => '33.33',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-19',
'bit_score' => '95.9',
'alignment_length' => '207',
'identity_percentage' => '28.99',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '1e-19',
'bit_score' => '95.5',
'alignment_length' => '271',
'identity_percentage' => '27.31',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '8e-18',
'bit_score' => '90.1',
'alignment_length' => '221',
'identity_percentage' => '28.51',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '2e-17',
'bit_score' => '88.6',
'alignment_length' => '216',
'identity_percentage' => '28.70',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '6e-17',
'bit_score' => '87.0',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '8e-17',
'bit_score' => '86.7',
'alignment_length' => '250',
'identity_percentage' => '29.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '6e-16',
'bit_score' => '83.6',
'alignment_length' => '285',
'identity_percentage' => '27.37',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '8e-16',
'bit_score' => '83.6',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '2e-15',
'bit_score' => '81.6',
'alignment_length' => '300',
'identity_percentage' => '25.67',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '5e-15',
'bit_score' => '81.6',
'alignment_length' => '179',
'identity_percentage' => '30.73',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '5e-15',
'bit_score' => '80.5',
'alignment_length' => '271',
'identity_percentage' => '28.78',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '6e-15',
'bit_score' => '78.2',
'alignment_length' => '290',
'identity_percentage' => '26.90',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '7e-15',
'bit_score' => '80.5',
'alignment_length' => '268',
'identity_percentage' => '28.73',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '279',
'identity_percentage' => '27.96',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-14',
'bit_score' => '77.4',
'alignment_length' => '279',
'identity_percentage' => '26.16',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '5e-14',
'bit_score' => '78.2',
'alignment_length' => '223',
'identity_percentage' => '27.80',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-13',
'bit_score' => '74.7',
'alignment_length' => '267',
'identity_percentage' => '26.59',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '3e-13',
'bit_score' => '73.6',
'alignment_length' => '272',
'identity_percentage' => '26.10',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '5e-13',
'bit_score' => '74.3',
'alignment_length' => '294',
'identity_percentage' => '26.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-12',
'bit_score' => '73.6',
'alignment_length' => '230',
'identity_percentage' => '26.52',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-12',
'bit_score' => '72.8',
'alignment_length' => '226',
'identity_percentage' => '24.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '2e-12',
'bit_score' => '72.0',
'alignment_length' => '232',
'identity_percentage' => '26.29',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '307',
'identity_percentage' => '24.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '1e-11',
'bit_score' => '70.9',
'alignment_length' => '236',
'identity_percentage' => '26.27',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '238',
'identity_percentage' => '27.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '3e-11',
'bit_score' => '69.3',
'alignment_length' => '221',
'identity_percentage' => '25.34',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '9e-11',
'bit_score' => '67.8',
'alignment_length' => '191',
'identity_percentage' => '24.61',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '3e-10',
'bit_score' => '65.9',
'alignment_length' => '319',
'identity_percentage' => '26.02',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '1e-09',
'bit_score' => '64.3',
'alignment_length' => '173',
'identity_percentage' => '28.90',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '2e-09',
'bit_score' => '63.9',
'alignment_length' => '200',
'identity_percentage' => '24.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '3e-09',
'bit_score' => '62.0',
'alignment_length' => '253',
'identity_percentage' => '26.48',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '3e-09',
'bit_score' => '62.8',
'alignment_length' => '145',
'identity_percentage' => '28.28',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '6e-09',
'bit_score' => '60.8',
'alignment_length' => '317',
'identity_percentage' => '24.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '304',
'identity_percentage' => '23.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-08',
'bit_score' => '59.7',
'alignment_length' => '300',
'identity_percentage' => '23.33',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '1e-07',
'bit_score' => '57.8',
'alignment_length' => '308',
'identity_percentage' => '24.03',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00006473' => array(
'gene_id' => 'WBGene00006473',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '256',
'identity_percentage' => '25.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '224',
'identity_percentage' => '22.77',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '289',
'identity_percentage' => '24.22',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '5e-07',
'bit_score' => '55.8',
'alignment_length' => '319',
'identity_percentage' => '23.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '346',
'identity_percentage' => '23.12',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '294',
'identity_percentage' => '24.49',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '4e-06',
'bit_score' => '52.0',
'alignment_length' => '209',
'identity_percentage' => '28.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '193',
'identity_percentage' => '28.50',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '5e-06',
'bit_score' => '52.4',
'alignment_length' => '91',
'identity_percentage' => '28.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '6e-06',
'bit_score' => '52.0',
'alignment_length' => '314',
'identity_percentage' => '22.61',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000169972'
),
'drm' => array(
(int) 0 => 'FBgn0038811'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL09G01900',
(int) 2 => 'OL15G02230'
),
'cel' => array(
(int) 0 => 'WBGene00004248',
(int) 1 => 'WBGene00006473'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440'
),
'scp' => array(
(int) 0 => 'SPCC126.03',
(int) 1 => 'SPCC16C4.06c',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G67180'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840'
)
),
'gene_id' => 'ENSMUSG00000029507',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000029507',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'OM_15G00690',
'gf_placeholder' => 'HOM03P007127',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '921',
'alignment_length' => '442',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '6e-97',
'bit_score' => '305',
'alignment_length' => '373',
'identity_percentage' => '43.43',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '6e-71',
'bit_score' => '242',
'alignment_length' => '397',
'identity_percentage' => '37.03',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '1e-69',
'bit_score' => '235',
'alignment_length' => '358',
'identity_percentage' => '39.11',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-68',
'bit_score' => '226',
'alignment_length' => '339',
'identity_percentage' => '38.35',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '1e-67',
'bit_score' => '224',
'alignment_length' => '330',
'identity_percentage' => '39.70',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '3e-67',
'bit_score' => '227',
'alignment_length' => '365',
'identity_percentage' => '36.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '9e-66',
'bit_score' => '219',
'alignment_length' => '335',
'identity_percentage' => '39.40',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '9e-66',
'bit_score' => '222',
'alignment_length' => '387',
'identity_percentage' => '35.92',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '9e-66',
'bit_score' => '225',
'alignment_length' => '435',
'identity_percentage' => '34.25',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '3e-63',
'bit_score' => '217',
'alignment_length' => '417',
'identity_percentage' => '34.77',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '4e-63',
'bit_score' => '216',
'alignment_length' => '437',
'identity_percentage' => '33.18',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '4e-62',
'bit_score' => '221',
'alignment_length' => '342',
'identity_percentage' => '37.43',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-57',
'bit_score' => '205',
'alignment_length' => '381',
'identity_percentage' => '35.17',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '6e-56',
'bit_score' => '197',
'alignment_length' => '379',
'identity_percentage' => '34.83',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '3e-52',
'bit_score' => '187',
'alignment_length' => '338',
'identity_percentage' => '34.91',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '3e-50',
'bit_score' => '187',
'alignment_length' => '346',
'identity_percentage' => '34.39',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '4e-49',
'bit_score' => '177',
'alignment_length' => '361',
'identity_percentage' => '33.52',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '1e-47',
'bit_score' => '177',
'alignment_length' => '359',
'identity_percentage' => '31.48',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '1e-41',
'bit_score' => '153',
'alignment_length' => '257',
'identity_percentage' => '35.80',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '1e-40',
'bit_score' => '154',
'alignment_length' => '350',
'identity_percentage' => '30.57',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '1e-37',
'bit_score' => '144',
'alignment_length' => '337',
'identity_percentage' => '32.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '6e-36',
'bit_score' => '143',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '7e-36',
'bit_score' => '142',
'alignment_length' => '385',
'identity_percentage' => '30.13',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '2e-34',
'bit_score' => '137',
'alignment_length' => '391',
'identity_percentage' => '27.37',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '3e-34',
'bit_score' => '135',
'alignment_length' => '343',
'identity_percentage' => '28.86',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-34',
'bit_score' => '137',
'alignment_length' => '187',
'identity_percentage' => '40.11',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '2e-33',
'bit_score' => '135',
'alignment_length' => '167',
'identity_percentage' => '39.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '2e-33',
'bit_score' => '133',
'alignment_length' => '389',
'identity_percentage' => '27.76',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '4e-33',
'bit_score' => '135',
'alignment_length' => '201',
'identity_percentage' => '34.33',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '3e-32',
'bit_score' => '131',
'alignment_length' => '179',
'identity_percentage' => '36.31',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '210',
'identity_percentage' => '33.33',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '5e-31',
'bit_score' => '128',
'alignment_length' => '201',
'identity_percentage' => '36.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '7e-31',
'bit_score' => '130',
'alignment_length' => '242',
'identity_percentage' => '32.23',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '3e-30',
'bit_score' => '126',
'alignment_length' => '182',
'identity_percentage' => '37.36',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '3e-30',
'bit_score' => '125',
'alignment_length' => '363',
'identity_percentage' => '25.07',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '4e-30',
'bit_score' => '125',
'alignment_length' => '178',
'identity_percentage' => '37.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '6e-28',
'bit_score' => '116',
'alignment_length' => '299',
'identity_percentage' => '29.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '8e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.34',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '2e-22',
'bit_score' => '104',
'alignment_length' => '182',
'identity_percentage' => '34.07',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '3e-21',
'bit_score' => '98.6',
'alignment_length' => '302',
'identity_percentage' => '27.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '7e-21',
'bit_score' => '99.4',
'alignment_length' => '199',
'identity_percentage' => '29.65',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '3e-20',
'bit_score' => '97.4',
'alignment_length' => '213',
'identity_percentage' => '33.33',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-19',
'bit_score' => '95.9',
'alignment_length' => '207',
'identity_percentage' => '28.99',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '1e-19',
'bit_score' => '95.5',
'alignment_length' => '271',
'identity_percentage' => '27.31',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '8e-18',
'bit_score' => '90.1',
'alignment_length' => '221',
'identity_percentage' => '28.51',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '2e-17',
'bit_score' => '88.6',
'alignment_length' => '216',
'identity_percentage' => '28.70',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '6e-17',
'bit_score' => '87.0',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '8e-17',
'bit_score' => '86.7',
'alignment_length' => '250',
'identity_percentage' => '29.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '6e-16',
'bit_score' => '83.6',
'alignment_length' => '285',
'identity_percentage' => '27.37',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '8e-16',
'bit_score' => '83.6',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '2e-15',
'bit_score' => '81.6',
'alignment_length' => '300',
'identity_percentage' => '25.67',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '5e-15',
'bit_score' => '81.6',
'alignment_length' => '179',
'identity_percentage' => '30.73',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000764',
'ORTHOFAM' => 'ORTHO03P000662'
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '5e-15',
'bit_score' => '80.5',
'alignment_length' => '271',
'identity_percentage' => '28.78',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '6e-15',
'bit_score' => '78.2',
'alignment_length' => '290',
'identity_percentage' => '26.90',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '7e-15',
'bit_score' => '80.5',
'alignment_length' => '268',
'identity_percentage' => '28.73',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '279',
'identity_percentage' => '27.96',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-14',
'bit_score' => '77.4',
'alignment_length' => '279',
'identity_percentage' => '26.16',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '5e-14',
'bit_score' => '78.2',
'alignment_length' => '223',
'identity_percentage' => '27.80',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-13',
'bit_score' => '74.7',
'alignment_length' => '267',
'identity_percentage' => '26.59',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '3e-13',
'bit_score' => '73.6',
'alignment_length' => '272',
'identity_percentage' => '26.10',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '5e-13',
'bit_score' => '74.3',
'alignment_length' => '294',
'identity_percentage' => '26.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-12',
'bit_score' => '73.6',
'alignment_length' => '230',
'identity_percentage' => '26.52',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-12',
'bit_score' => '72.8',
'alignment_length' => '226',
'identity_percentage' => '24.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '2e-12',
'bit_score' => '72.0',
'alignment_length' => '232',
'identity_percentage' => '26.29',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '307',
'identity_percentage' => '24.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '1e-11',
'bit_score' => '70.9',
'alignment_length' => '236',
'identity_percentage' => '26.27',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '238',
'identity_percentage' => '27.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '3e-11',
'bit_score' => '69.3',
'alignment_length' => '221',
'identity_percentage' => '25.34',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '9e-11',
'bit_score' => '67.8',
'alignment_length' => '191',
'identity_percentage' => '24.61',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '3e-10',
'bit_score' => '65.9',
'alignment_length' => '319',
'identity_percentage' => '26.02',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '1e-09',
'bit_score' => '64.3',
'alignment_length' => '173',
'identity_percentage' => '28.90',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '2e-09',
'bit_score' => '63.9',
'alignment_length' => '200',
'identity_percentage' => '24.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '3e-09',
'bit_score' => '62.0',
'alignment_length' => '253',
'identity_percentage' => '26.48',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '3e-09',
'bit_score' => '62.8',
'alignment_length' => '145',
'identity_percentage' => '28.28',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '6e-09',
'bit_score' => '60.8',
'alignment_length' => '317',
'identity_percentage' => '24.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '304',
'identity_percentage' => '23.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-08',
'bit_score' => '59.7',
'alignment_length' => '300',
'identity_percentage' => '23.33',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P074791'
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '1e-07',
'bit_score' => '57.8',
'alignment_length' => '308',
'identity_percentage' => '24.03',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'WBGene00006473' => array(
'gene_id' => 'WBGene00006473',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '256',
'identity_percentage' => '25.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '224',
'identity_percentage' => '22.77',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P020884',
'ORTHOFAM' => 'ORTHO03P029537'
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '289',
'identity_percentage' => '24.22',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '5e-07',
'bit_score' => '55.8',
'alignment_length' => '319',
'identity_percentage' => '23.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '346',
'identity_percentage' => '23.12',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '294',
'identity_percentage' => '24.49',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '4e-06',
'bit_score' => '52.0',
'alignment_length' => '209',
'identity_percentage' => '28.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '193',
'identity_percentage' => '28.50',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P005136',
'ORTHOFAM' => 'ORTHO03P004812'
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '5e-06',
'bit_score' => '52.4',
'alignment_length' => '91',
'identity_percentage' => '28.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '6e-06',
'bit_score' => '52.0',
'alignment_length' => '314',
'identity_percentage' => '22.61',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P019199',
'ORTHOFAM' => 'ORTHO03P025037'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000169972'
),
'drm' => array(
(int) 0 => 'FBgn0038811'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL09G01900',
(int) 2 => 'OL15G02230'
),
'cel' => array(
(int) 0 => 'WBGene00004248',
(int) 1 => 'WBGene00006473'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440'
),
'scp' => array(
(int) 0 => 'SPCC126.03',
(int) 1 => 'SPCC16C4.06c',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G67180'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840'
)
)
$gene_id = 'ENSMUSG00000029507'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000029507'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OM_15G00690'
$gf_placeholder = 'HOM03P007127'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '2e-12',
'bit_score' => '72.0',
'alignment_length' => '232',
'identity_percentage' => '26.29',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_201G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '921',
'alignment_length' => '442',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '6e-97',
'bit_score' => '305',
'alignment_length' => '373',
'identity_percentage' => '43.43',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '6e-71',
'bit_score' => '242',
'alignment_length' => '397',
'identity_percentage' => '37.03',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '1e-69',
'bit_score' => '235',
'alignment_length' => '358',
'identity_percentage' => '39.11',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-68',
'bit_score' => '226',
'alignment_length' => '339',
'identity_percentage' => '38.35',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '1e-67',
'bit_score' => '224',
'alignment_length' => '330',
'identity_percentage' => '39.70',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '3e-67',
'bit_score' => '227',
'alignment_length' => '365',
'identity_percentage' => '36.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '9e-66',
'bit_score' => '219',
'alignment_length' => '335',
'identity_percentage' => '39.40',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '9e-66',
'bit_score' => '222',
'alignment_length' => '387',
'identity_percentage' => '35.92',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '9e-66',
'bit_score' => '225',
'alignment_length' => '435',
'identity_percentage' => '34.25',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '3e-63',
'bit_score' => '217',
'alignment_length' => '417',
'identity_percentage' => '34.77',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '4e-63',
'bit_score' => '216',
'alignment_length' => '437',
'identity_percentage' => '33.18',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '4e-62',
'bit_score' => '221',
'alignment_length' => '342',
'identity_percentage' => '37.43',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-57',
'bit_score' => '205',
'alignment_length' => '381',
'identity_percentage' => '35.17',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '6e-56',
'bit_score' => '197',
'alignment_length' => '379',
'identity_percentage' => '34.83',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '3e-52',
'bit_score' => '187',
'alignment_length' => '338',
'identity_percentage' => '34.91',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '3e-50',
'bit_score' => '187',
'alignment_length' => '346',
'identity_percentage' => '34.39',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '4e-49',
'bit_score' => '177',
'alignment_length' => '361',
'identity_percentage' => '33.52',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '1e-47',
'bit_score' => '177',
'alignment_length' => '359',
'identity_percentage' => '31.48',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '1e-41',
'bit_score' => '153',
'alignment_length' => '257',
'identity_percentage' => '35.80',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '1e-40',
'bit_score' => '154',
'alignment_length' => '350',
'identity_percentage' => '30.57',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '1e-37',
'bit_score' => '144',
'alignment_length' => '337',
'identity_percentage' => '32.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '6e-36',
'bit_score' => '143',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '7e-36',
'bit_score' => '142',
'alignment_length' => '385',
'identity_percentage' => '30.13',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '2e-34',
'bit_score' => '137',
'alignment_length' => '391',
'identity_percentage' => '27.37',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '3e-34',
'bit_score' => '135',
'alignment_length' => '343',
'identity_percentage' => '28.86',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-34',
'bit_score' => '137',
'alignment_length' => '187',
'identity_percentage' => '40.11',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '2e-33',
'bit_score' => '135',
'alignment_length' => '167',
'identity_percentage' => '39.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '2e-33',
'bit_score' => '133',
'alignment_length' => '389',
'identity_percentage' => '27.76',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '4e-33',
'bit_score' => '135',
'alignment_length' => '201',
'identity_percentage' => '34.33',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '3e-32',
'bit_score' => '131',
'alignment_length' => '179',
'identity_percentage' => '36.31',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '210',
'identity_percentage' => '33.33',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '5e-31',
'bit_score' => '128',
'alignment_length' => '201',
'identity_percentage' => '36.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '7e-31',
'bit_score' => '130',
'alignment_length' => '242',
'identity_percentage' => '32.23',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '3e-30',
'bit_score' => '126',
'alignment_length' => '182',
'identity_percentage' => '37.36',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '3e-30',
'bit_score' => '125',
'alignment_length' => '363',
'identity_percentage' => '25.07',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '4e-30',
'bit_score' => '125',
'alignment_length' => '178',
'identity_percentage' => '37.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '6e-28',
'bit_score' => '116',
'alignment_length' => '299',
'identity_percentage' => '29.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '8e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.34',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '2e-22',
'bit_score' => '104',
'alignment_length' => '182',
'identity_percentage' => '34.07',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '3e-21',
'bit_score' => '98.6',
'alignment_length' => '302',
'identity_percentage' => '27.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '7e-21',
'bit_score' => '99.4',
'alignment_length' => '199',
'identity_percentage' => '29.65',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '3e-20',
'bit_score' => '97.4',
'alignment_length' => '213',
'identity_percentage' => '33.33',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-19',
'bit_score' => '95.9',
'alignment_length' => '207',
'identity_percentage' => '28.99',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '1e-19',
'bit_score' => '95.5',
'alignment_length' => '271',
'identity_percentage' => '27.31',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '8e-18',
'bit_score' => '90.1',
'alignment_length' => '221',
'identity_percentage' => '28.51',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '2e-17',
'bit_score' => '88.6',
'alignment_length' => '216',
'identity_percentage' => '28.70',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '6e-17',
'bit_score' => '87.0',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '8e-17',
'bit_score' => '86.7',
'alignment_length' => '250',
'identity_percentage' => '29.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '6e-16',
'bit_score' => '83.6',
'alignment_length' => '285',
'identity_percentage' => '27.37',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '8e-16',
'bit_score' => '83.6',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '2e-15',
'bit_score' => '81.6',
'alignment_length' => '300',
'identity_percentage' => '25.67',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '5e-15',
'bit_score' => '81.6',
'alignment_length' => '179',
'identity_percentage' => '30.73',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '5e-15',
'bit_score' => '80.5',
'alignment_length' => '271',
'identity_percentage' => '28.78',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '6e-15',
'bit_score' => '78.2',
'alignment_length' => '290',
'identity_percentage' => '26.90',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '7e-15',
'bit_score' => '80.5',
'alignment_length' => '268',
'identity_percentage' => '28.73',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '279',
'identity_percentage' => '27.96',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-14',
'bit_score' => '77.4',
'alignment_length' => '279',
'identity_percentage' => '26.16',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '5e-14',
'bit_score' => '78.2',
'alignment_length' => '223',
'identity_percentage' => '27.80',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-13',
'bit_score' => '74.7',
'alignment_length' => '267',
'identity_percentage' => '26.59',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '3e-13',
'bit_score' => '73.6',
'alignment_length' => '272',
'identity_percentage' => '26.10',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '5e-13',
'bit_score' => '74.3',
'alignment_length' => '294',
'identity_percentage' => '26.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-12',
'bit_score' => '73.6',
'alignment_length' => '230',
'identity_percentage' => '26.52',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-12',
'bit_score' => '72.8',
'alignment_length' => '226',
'identity_percentage' => '24.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '2e-12',
'bit_score' => '72.0',
'alignment_length' => '232',
'identity_percentage' => '26.29',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '307',
'identity_percentage' => '24.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '1e-11',
'bit_score' => '70.9',
'alignment_length' => '236',
'identity_percentage' => '26.27',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '238',
'identity_percentage' => '27.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '3e-11',
'bit_score' => '69.3',
'alignment_length' => '221',
'identity_percentage' => '25.34',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '9e-11',
'bit_score' => '67.8',
'alignment_length' => '191',
'identity_percentage' => '24.61',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '3e-10',
'bit_score' => '65.9',
'alignment_length' => '319',
'identity_percentage' => '26.02',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '1e-09',
'bit_score' => '64.3',
'alignment_length' => '173',
'identity_percentage' => '28.90',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '2e-09',
'bit_score' => '63.9',
'alignment_length' => '200',
'identity_percentage' => '24.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '3e-09',
'bit_score' => '62.0',
'alignment_length' => '253',
'identity_percentage' => '26.48',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '3e-09',
'bit_score' => '62.8',
'alignment_length' => '145',
'identity_percentage' => '28.28',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '6e-09',
'bit_score' => '60.8',
'alignment_length' => '317',
'identity_percentage' => '24.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '304',
'identity_percentage' => '23.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-08',
'bit_score' => '59.7',
'alignment_length' => '300',
'identity_percentage' => '23.33',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '1e-07',
'bit_score' => '57.8',
'alignment_length' => '308',
'identity_percentage' => '24.03',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00006473' => array(
'gene_id' => 'WBGene00006473',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '256',
'identity_percentage' => '25.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '224',
'identity_percentage' => '22.77',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '289',
'identity_percentage' => '24.22',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '5e-07',
'bit_score' => '55.8',
'alignment_length' => '319',
'identity_percentage' => '23.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '346',
'identity_percentage' => '23.12',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '294',
'identity_percentage' => '24.49',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '4e-06',
'bit_score' => '52.0',
'alignment_length' => '209',
'identity_percentage' => '28.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '193',
'identity_percentage' => '28.50',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '5e-06',
'bit_score' => '52.4',
'alignment_length' => '91',
'identity_percentage' => '28.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '6e-06',
'bit_score' => '52.0',
'alignment_length' => '314',
'identity_percentage' => '22.61',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000169972'
),
'drm' => array(
(int) 0 => 'FBgn0038811'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL09G01900',
(int) 2 => 'OL15G02230'
),
'cel' => array(
(int) 0 => 'WBGene00004248',
(int) 1 => 'WBGene00006473'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440'
),
'scp' => array(
(int) 0 => 'SPCC126.03',
(int) 1 => 'SPCC16C4.06c',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G67180'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840'
)
),
'gene_id' => 'ENSMUSG00000029507',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000029507',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'OM_15G00690',
'gf_placeholder' => 'HOM03P007127',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '921',
'alignment_length' => '442',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '6e-97',
'bit_score' => '305',
'alignment_length' => '373',
'identity_percentage' => '43.43',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '6e-71',
'bit_score' => '242',
'alignment_length' => '397',
'identity_percentage' => '37.03',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '1e-69',
'bit_score' => '235',
'alignment_length' => '358',
'identity_percentage' => '39.11',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-68',
'bit_score' => '226',
'alignment_length' => '339',
'identity_percentage' => '38.35',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '1e-67',
'bit_score' => '224',
'alignment_length' => '330',
'identity_percentage' => '39.70',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '3e-67',
'bit_score' => '227',
'alignment_length' => '365',
'identity_percentage' => '36.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '9e-66',
'bit_score' => '219',
'alignment_length' => '335',
'identity_percentage' => '39.40',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '9e-66',
'bit_score' => '222',
'alignment_length' => '387',
'identity_percentage' => '35.92',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '9e-66',
'bit_score' => '225',
'alignment_length' => '435',
'identity_percentage' => '34.25',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '3e-63',
'bit_score' => '217',
'alignment_length' => '417',
'identity_percentage' => '34.77',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '4e-63',
'bit_score' => '216',
'alignment_length' => '437',
'identity_percentage' => '33.18',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '4e-62',
'bit_score' => '221',
'alignment_length' => '342',
'identity_percentage' => '37.43',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-57',
'bit_score' => '205',
'alignment_length' => '381',
'identity_percentage' => '35.17',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '6e-56',
'bit_score' => '197',
'alignment_length' => '379',
'identity_percentage' => '34.83',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '3e-52',
'bit_score' => '187',
'alignment_length' => '338',
'identity_percentage' => '34.91',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '3e-50',
'bit_score' => '187',
'alignment_length' => '346',
'identity_percentage' => '34.39',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '4e-49',
'bit_score' => '177',
'alignment_length' => '361',
'identity_percentage' => '33.52',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '1e-47',
'bit_score' => '177',
'alignment_length' => '359',
'identity_percentage' => '31.48',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '1e-41',
'bit_score' => '153',
'alignment_length' => '257',
'identity_percentage' => '35.80',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '1e-40',
'bit_score' => '154',
'alignment_length' => '350',
'identity_percentage' => '30.57',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '1e-37',
'bit_score' => '144',
'alignment_length' => '337',
'identity_percentage' => '32.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '6e-36',
'bit_score' => '143',
'alignment_length' => '171',
'identity_percentage' => '41.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '7e-36',
'bit_score' => '142',
'alignment_length' => '385',
'identity_percentage' => '30.13',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '2e-34',
'bit_score' => '137',
'alignment_length' => '391',
'identity_percentage' => '27.37',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '3e-34',
'bit_score' => '135',
'alignment_length' => '343',
'identity_percentage' => '28.86',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-34',
'bit_score' => '137',
'alignment_length' => '187',
'identity_percentage' => '40.11',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '2e-33',
'bit_score' => '135',
'alignment_length' => '167',
'identity_percentage' => '39.52',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '2e-33',
'bit_score' => '133',
'alignment_length' => '389',
'identity_percentage' => '27.76',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '4e-33',
'bit_score' => '135',
'alignment_length' => '201',
'identity_percentage' => '34.33',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '3e-32',
'bit_score' => '131',
'alignment_length' => '179',
'identity_percentage' => '36.31',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '210',
'identity_percentage' => '33.33',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '5e-31',
'bit_score' => '128',
'alignment_length' => '201',
'identity_percentage' => '36.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '7e-31',
'bit_score' => '130',
'alignment_length' => '242',
'identity_percentage' => '32.23',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '3e-30',
'bit_score' => '126',
'alignment_length' => '182',
'identity_percentage' => '37.36',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '3e-30',
'bit_score' => '125',
'alignment_length' => '363',
'identity_percentage' => '25.07',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '4e-30',
'bit_score' => '125',
'alignment_length' => '178',
'identity_percentage' => '37.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '6e-28',
'bit_score' => '116',
'alignment_length' => '299',
'identity_percentage' => '29.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '8e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.34',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '2e-22',
'bit_score' => '104',
'alignment_length' => '182',
'identity_percentage' => '34.07',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '3e-21',
'bit_score' => '98.6',
'alignment_length' => '302',
'identity_percentage' => '27.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '7e-21',
'bit_score' => '99.4',
'alignment_length' => '199',
'identity_percentage' => '29.65',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '3e-20',
'bit_score' => '97.4',
'alignment_length' => '213',
'identity_percentage' => '33.33',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-19',
'bit_score' => '95.9',
'alignment_length' => '207',
'identity_percentage' => '28.99',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '1e-19',
'bit_score' => '95.5',
'alignment_length' => '271',
'identity_percentage' => '27.31',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '8e-18',
'bit_score' => '90.1',
'alignment_length' => '221',
'identity_percentage' => '28.51',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '2e-17',
'bit_score' => '88.6',
'alignment_length' => '216',
'identity_percentage' => '28.70',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '6e-17',
'bit_score' => '87.0',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '8e-17',
'bit_score' => '86.7',
'alignment_length' => '250',
'identity_percentage' => '29.20',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '6e-16',
'bit_score' => '83.6',
'alignment_length' => '285',
'identity_percentage' => '27.37',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '8e-16',
'bit_score' => '83.6',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '27.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '2e-15',
'bit_score' => '81.6',
'alignment_length' => '300',
'identity_percentage' => '25.67',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '5e-15',
'bit_score' => '81.6',
'alignment_length' => '179',
'identity_percentage' => '30.73',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000764',
'ORTHOFAM' => 'ORTHO03P000662'
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '5e-15',
'bit_score' => '80.5',
'alignment_length' => '271',
'identity_percentage' => '28.78',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '6e-15',
'bit_score' => '78.2',
'alignment_length' => '290',
'identity_percentage' => '26.90',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '7e-15',
'bit_score' => '80.5',
'alignment_length' => '268',
'identity_percentage' => '28.73',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '279',
'identity_percentage' => '27.96',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-14',
'bit_score' => '77.4',
'alignment_length' => '279',
'identity_percentage' => '26.16',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '5e-14',
'bit_score' => '78.2',
'alignment_length' => '223',
'identity_percentage' => '27.80',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-13',
'bit_score' => '74.7',
'alignment_length' => '267',
'identity_percentage' => '26.59',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '3e-13',
'bit_score' => '73.6',
'alignment_length' => '272',
'identity_percentage' => '26.10',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '5e-13',
'bit_score' => '74.3',
'alignment_length' => '294',
'identity_percentage' => '26.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-12',
'bit_score' => '73.6',
'alignment_length' => '230',
'identity_percentage' => '26.52',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-12',
'bit_score' => '72.8',
'alignment_length' => '226',
'identity_percentage' => '24.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '2e-12',
'bit_score' => '72.0',
'alignment_length' => '232',
'identity_percentage' => '26.29',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '307',
'identity_percentage' => '24.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '1e-11',
'bit_score' => '70.9',
'alignment_length' => '236',
'identity_percentage' => '26.27',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '238',
'identity_percentage' => '27.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '3e-11',
'bit_score' => '69.3',
'alignment_length' => '221',
'identity_percentage' => '25.34',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '9e-11',
'bit_score' => '67.8',
'alignment_length' => '191',
'identity_percentage' => '24.61',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '3e-10',
'bit_score' => '65.9',
'alignment_length' => '319',
'identity_percentage' => '26.02',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '1e-09',
'bit_score' => '64.3',
'alignment_length' => '173',
'identity_percentage' => '28.90',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '2e-09',
'bit_score' => '63.9',
'alignment_length' => '200',
'identity_percentage' => '24.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '3e-09',
'bit_score' => '62.0',
'alignment_length' => '253',
'identity_percentage' => '26.48',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '3e-09',
'bit_score' => '62.8',
'alignment_length' => '145',
'identity_percentage' => '28.28',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '6e-09',
'bit_score' => '60.8',
'alignment_length' => '317',
'identity_percentage' => '24.29',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '304',
'identity_percentage' => '23.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-08',
'bit_score' => '59.7',
'alignment_length' => '300',
'identity_percentage' => '23.33',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P074791'
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '1e-07',
'bit_score' => '57.8',
'alignment_length' => '308',
'identity_percentage' => '24.03',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'WBGene00006473' => array(
'gene_id' => 'WBGene00006473',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '256',
'identity_percentage' => '25.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '224',
'identity_percentage' => '22.77',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P020884',
'ORTHOFAM' => 'ORTHO03P029537'
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '289',
'identity_percentage' => '24.22',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '5e-07',
'bit_score' => '55.8',
'alignment_length' => '319',
'identity_percentage' => '23.82',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '346',
'identity_percentage' => '23.12',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '294',
'identity_percentage' => '24.49',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '4e-06',
'bit_score' => '52.0',
'alignment_length' => '209',
'identity_percentage' => '28.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '193',
'identity_percentage' => '28.50',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P005136',
'ORTHOFAM' => 'ORTHO03P004812'
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '5e-06',
'bit_score' => '52.4',
'alignment_length' => '91',
'identity_percentage' => '28.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '6e-06',
'bit_score' => '52.0',
'alignment_length' => '314',
'identity_percentage' => '22.61',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P019199',
'ORTHOFAM' => 'ORTHO03P025037'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000169972'
),
'drm' => array(
(int) 0 => 'FBgn0038811'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL09G01900',
(int) 2 => 'OL15G02230'
),
'cel' => array(
(int) 0 => 'WBGene00004248',
(int) 1 => 'WBGene00006473'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440'
),
'scp' => array(
(int) 0 => 'SPCC126.03',
(int) 1 => 'SPCC16C4.06c',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G67180'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840'
)
)
$gene_id = 'ENSMUSG00000029507'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000029507'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OM_15G00690'
$gf_placeholder = 'HOM03P007127'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '2e-12',
'bit_score' => '72.0',
'alignment_length' => '232',
'identity_percentage' => '26.29',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_201G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
2e-12 |
72.0 |
232 |
26.29 |
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench