|
CNC64A_529G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000027790' => array(
'gene_id' => 'ENSMUSG00000027790',
'e_value' => '0.0',
'bit_score' => '3805',
'alignment_length' => '1819',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000090402' => array(
'gene_id' => 'ENSG00000090402',
'e_value' => '0.0',
'bit_score' => '3035',
'alignment_length' => '1829',
'identity_percentage' => '77.75',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000257335' => array(
'gene_id' => 'ENSG00000257335',
'e_value' => '0.0',
'bit_score' => '2266',
'alignment_length' => '1861',
'identity_percentage' => '57.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000068587' => array(
'gene_id' => 'ENSMUSG00000068587',
'e_value' => '0.0',
'bit_score' => '2265',
'alignment_length' => '1766',
'identity_percentage' => '60.25',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000278563' => array(
'gene_id' => 'ENSG00000278563',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000257743' => array(
'gene_id' => 'ENSG00000257743',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00017071' => array(
'gene_id' => 'WBGene00017071',
'e_value' => '6e-174',
'bit_score' => '559',
'alignment_length' => '861',
'identity_percentage' => '38.79',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0269790' => array(
'gene_id' => 'DDB_G0269790',
'e_value' => '4e-168',
'bit_score' => '541',
'alignment_length' => '863',
'identity_percentage' => '38.59',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'PP00264G00160' => array(
'gene_id' => 'PP00264G00160',
'e_value' => '1e-166',
'bit_score' => '538',
'alignment_length' => '902',
'identity_percentage' => '35.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00013G02430' => array(
'gene_id' => 'PP00013G02430',
'e_value' => '4e-166',
'bit_score' => '537',
'alignment_length' => '866',
'identity_percentage' => '36.03',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00019895' => array(
'gene_id' => 'WBGene00019895',
'e_value' => '8e-165',
'bit_score' => '535',
'alignment_length' => '889',
'identity_percentage' => '38.36',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'PP00119G00640' => array(
'gene_id' => 'PP00119G00640',
'e_value' => '4e-163',
'bit_score' => '529',
'alignment_length' => '871',
'identity_percentage' => '35.71',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00086G00660' => array(
'gene_id' => 'PP00086G00660',
'e_value' => '2e-161',
'bit_score' => '523',
'alignment_length' => '852',
'identity_percentage' => '36.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00011G01860' => array(
'gene_id' => 'PP00011G01860',
'e_value' => '3e-159',
'bit_score' => '518',
'alignment_length' => '881',
'identity_percentage' => '35.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'phs293220' => array(
'gene_id' => 'phs293220',
'e_value' => '4e-159',
'bit_score' => '518',
'alignment_length' => '866',
'identity_percentage' => '35.45',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'PP00025G00520' => array(
'gene_id' => 'PP00025G00520',
'e_value' => '1e-158',
'bit_score' => '517',
'alignment_length' => '897',
'identity_percentage' => '34.89',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS06G46340' => array(
'gene_id' => 'OS06G46340',
'e_value' => '7e-158',
'bit_score' => '514',
'alignment_length' => '801',
'identity_percentage' => '37.83',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT5G11720' => array(
'gene_id' => 'AT5G11720',
'e_value' => '4e-157',
'bit_score' => '512',
'alignment_length' => '773',
'identity_percentage' => '38.42',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS06G46284' => array(
'gene_id' => 'OS06G46284',
'e_value' => '7e-157',
'bit_score' => '511',
'alignment_length' => '876',
'identity_percentage' => '35.96',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'phs293240' => array(
'gene_id' => 'phs293240',
'e_value' => '2e-155',
'bit_score' => '513',
'alignment_length' => '867',
'identity_percentage' => '34.95',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'PP00043G00100' => array(
'gene_id' => 'PP00043G00100',
'e_value' => '3e-150',
'bit_score' => '493',
'alignment_length' => '874',
'identity_percentage' => '35.13',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00080G01120' => array(
'gene_id' => 'PP00080G01120',
'e_value' => '3e-150',
'bit_score' => '494',
'alignment_length' => '901',
'identity_percentage' => '34.18',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00092G00960' => array(
'gene_id' => 'ATR_00092G00960',
'e_value' => '3e-146',
'bit_score' => '480',
'alignment_length' => '747',
'identity_percentage' => '37.75',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS01G03950' => array(
'gene_id' => 'OS01G03950',
'e_value' => '9e-145',
'bit_score' => '479',
'alignment_length' => '928',
'identity_percentage' => '34.59',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT3G45940' => array(
'gene_id' => 'AT3G45940',
'e_value' => '2e-144',
'bit_score' => '476',
'alignment_length' => '819',
'identity_percentage' => '37.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00006G00120' => array(
'gene_id' => 'PP00006G00120',
'e_value' => '3e-144',
'bit_score' => '477',
'alignment_length' => '919',
'identity_percentage' => '33.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G68560' => array(
'gene_id' => 'AT1G68560',
'e_value' => '1e-143',
'bit_score' => '475',
'alignment_length' => '891',
'identity_percentage' => '34.23',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00245G00510' => array(
'gene_id' => 'PP00245G00510',
'e_value' => '5e-142',
'bit_score' => '470',
'alignment_length' => '874',
'identity_percentage' => '34.44',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00157G00350' => array(
'gene_id' => 'PP00157G00350',
'e_value' => '6e-142',
'bit_score' => '471',
'alignment_length' => '903',
'identity_percentage' => '32.56',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00264G00120' => array(
'gene_id' => 'PP00264G00120',
'e_value' => '2e-140',
'bit_score' => '468',
'alignment_length' => '876',
'identity_percentage' => '33.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00110' => array(
'gene_id' => 'ATR_00079G00110',
'e_value' => '1e-136',
'bit_score' => '451',
'alignment_length' => '714',
'identity_percentage' => '37.68',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AC00G97780' => array(
'gene_id' => 'AC00G97780',
'e_value' => '2e-123',
'bit_score' => '416',
'alignment_length' => '731',
'identity_percentage' => '35.57',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G66180' => array(
'gene_id' => 'CV00G66180',
'e_value' => '4e-123',
'bit_score' => '417',
'alignment_length' => '732',
'identity_percentage' => '36.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G33310' => array(
'gene_id' => 'CV00G33310',
'e_value' => '6e-121',
'bit_score' => '412',
'alignment_length' => '970',
'identity_percentage' => '30.41',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G87890' => array(
'gene_id' => 'CV00G87890',
'e_value' => '5e-119',
'bit_score' => '402',
'alignment_length' => '779',
'identity_percentage' => '34.66',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AP00G35250' => array(
'gene_id' => 'AP00G35250',
'e_value' => '3e-116',
'bit_score' => '401',
'alignment_length' => '787',
'identity_percentage' => '33.04',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_008G02740' => array(
'gene_id' => 'CNC64A_008G02740',
'e_value' => '1e-112',
'bit_score' => '396',
'alignment_length' => '850',
'identity_percentage' => '33.18',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00080' => array(
'gene_id' => 'ATR_00079G00080',
'e_value' => '3e-106',
'bit_score' => '360',
'alignment_length' => '585',
'identity_percentage' => '37.95',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G25410' => array(
'gene_id' => 'HE0000G25410',
'e_value' => '2e-103',
'bit_score' => '353',
'alignment_length' => '675',
'identity_percentage' => '32.59',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'CV00G66200' => array(
'gene_id' => 'CV00G66200',
'e_value' => '5e-103',
'bit_score' => '352',
'alignment_length' => '678',
'identity_percentage' => '34.22',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'pte374950' => array(
'gene_id' => 'pte374950',
'e_value' => '2e-100',
'bit_score' => '348',
'alignment_length' => '829',
'identity_percentage' => '30.40',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AC00G02390' => array(
'gene_id' => 'AC00G02390',
'e_value' => '2e-99',
'bit_score' => '340',
'alignment_length' => '593',
'identity_percentage' => '34.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'pte268290' => array(
'gene_id' => 'pte268290',
'e_value' => '2e-99',
'bit_score' => '346',
'alignment_length' => '796',
'identity_percentage' => '31.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte323710' => array(
'gene_id' => 'pte323710',
'e_value' => '7e-99',
'bit_score' => '344',
'alignment_length' => '853',
'identity_percentage' => '28.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte186640' => array(
'gene_id' => 'pte186640',
'e_value' => '7e-98',
'bit_score' => '342',
'alignment_length' => '792',
'identity_percentage' => '30.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte388210' => array(
'gene_id' => 'pte388210',
'e_value' => '3e-97',
'bit_score' => '340',
'alignment_length' => '843',
'identity_percentage' => '28.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000214013' => array(
'gene_id' => 'ENSG00000214013',
'e_value' => '3e-87',
'bit_score' => '313',
'alignment_length' => '700',
'identity_percentage' => '31.14',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'OT_08G02830' => array(
'gene_id' => 'OT_08G02830',
'e_value' => '8e-86',
'bit_score' => '309',
'alignment_length' => '587',
'identity_percentage' => '33.05',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000062646' => array(
'gene_id' => 'ENSMUSG00000062646',
'e_value' => '1e-85',
'bit_score' => '308',
'alignment_length' => '810',
'identity_percentage' => '30.12',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'OM_16G01380' => array(
'gene_id' => 'OM_16G01380',
'e_value' => '8e-85',
'bit_score' => '306',
'alignment_length' => '549',
'identity_percentage' => '33.15',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'OL08G02650' => array(
'gene_id' => 'OL08G02650',
'e_value' => '2e-84',
'bit_score' => '301',
'alignment_length' => '579',
'identity_percentage' => '31.95',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G77390' => array(
'gene_id' => 'AC00G77390',
'e_value' => '6e-80',
'bit_score' => '290',
'alignment_length' => '616',
'identity_percentage' => '31.49',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OS07G23880' => array(
'gene_id' => 'OS07G23880',
'e_value' => '9e-80',
'bit_score' => '292',
'alignment_length' => '598',
'identity_percentage' => '33.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G05390' => array(
'gene_id' => 'MRCC299_08G05390',
'e_value' => '1e-78',
'bit_score' => '287',
'alignment_length' => '542',
'identity_percentage' => '32.47',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'AT3G23640' => array(
'gene_id' => 'AT3G23640',
'e_value' => '1e-78',
'bit_score' => '288',
'alignment_length' => '556',
'identity_percentage' => '34.71',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'phs92320' => array(
'gene_id' => 'phs92320',
'e_value' => '5e-78',
'bit_score' => '288',
'alignment_length' => '502',
'identity_percentage' => '36.06',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00018682' => array(
'gene_id' => 'WBGene00018682',
'e_value' => '5e-78',
'bit_score' => '285',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'PP00281G00070' => array(
'gene_id' => 'PP00281G00070',
'e_value' => '7e-78',
'bit_score' => '274',
'alignment_length' => '498',
'identity_percentage' => '34.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_019G00790' => array(
'gene_id' => 'CNC64A_019G00790',
'e_value' => '2e-77',
'bit_score' => '267',
'alignment_length' => '359',
'identity_percentage' => '40.11',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00065G01570' => array(
'gene_id' => 'ATR_00065G01570',
'e_value' => '1e-76',
'bit_score' => '280',
'alignment_length' => '634',
'identity_percentage' => '31.23',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00005G01250' => array(
'gene_id' => 'PP00005G01250',
'e_value' => '5e-76',
'bit_score' => '281',
'alignment_length' => '571',
'identity_percentage' => '33.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte180100' => array(
'gene_id' => 'pte180100',
'e_value' => '9e-76',
'bit_score' => '278',
'alignment_length' => '679',
'identity_percentage' => '29.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS03G11720' => array(
'gene_id' => 'OS03G11720',
'e_value' => '2e-75',
'bit_score' => '276',
'alignment_length' => '657',
'identity_percentage' => '30.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'pte70280' => array(
'gene_id' => 'pte70280',
'e_value' => '4e-75',
'bit_score' => '275',
'alignment_length' => '733',
'identity_percentage' => '28.24',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AT5G63840' => array(
'gene_id' => 'AT5G63840',
'e_value' => '2e-74',
'bit_score' => '274',
'alignment_length' => '650',
'identity_percentage' => '31.38',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G24690' => array(
'gene_id' => 'CV00G24690',
'e_value' => '3e-74',
'bit_score' => '273',
'alignment_length' => '640',
'identity_percentage' => '31.25',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000071650' => array(
'gene_id' => 'ENSMUSG00000071650',
'e_value' => '3e-74',
'bit_score' => '274',
'alignment_length' => '617',
'identity_percentage' => '31.28',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_01G07160' => array(
'gene_id' => 'BPRRCC1105_01G07160',
'e_value' => '4e-74',
'bit_score' => '274',
'alignment_length' => '521',
'identity_percentage' => '31.86',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'PP00041G01080' => array(
'gene_id' => 'PP00041G01080',
'e_value' => '4e-74',
'bit_score' => '275',
'alignment_length' => '572',
'identity_percentage' => '33.22',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01620' => array(
'gene_id' => 'RCC4223.04g01620',
'e_value' => '5e-74',
'bit_score' => '273',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G24040' => array(
'gene_id' => 'PI00G24040',
'e_value' => '2e-73',
'bit_score' => '271',
'alignment_length' => '640',
'identity_percentage' => '30.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00048G01310' => array(
'gene_id' => 'ATR_00048G01310',
'e_value' => '4e-73',
'bit_score' => '271',
'alignment_length' => '684',
'identity_percentage' => '31.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS07G23944' => array(
'gene_id' => 'OS07G23944',
'e_value' => '4e-73',
'bit_score' => '270',
'alignment_length' => '675',
'identity_percentage' => '31.70',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'MP05G06760' => array(
'gene_id' => 'MP05G06760',
'e_value' => '7e-73',
'bit_score' => '270',
'alignment_length' => '549',
'identity_percentage' => '32.06',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'SPAPB24D3.10c' => array(
'gene_id' => 'SPAPB24D3.10c',
'e_value' => '1e-72',
'bit_score' => '269',
'alignment_length' => '358',
'identity_percentage' => '41.62',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0269154' => array(
'gene_id' => 'DDB_G0269154',
'e_value' => '1e-72',
'bit_score' => '268',
'alignment_length' => '691',
'identity_percentage' => '29.96',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'PP00140G00390' => array(
'gene_id' => 'PP00140G00390',
'e_value' => '2e-72',
'bit_score' => '269',
'alignment_length' => '558',
'identity_percentage' => '33.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00242G00250' => array(
'gene_id' => 'PP00242G00250',
'e_value' => '3e-72',
'bit_score' => '268',
'alignment_length' => '592',
'identity_percentage' => '31.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G110660' => array(
'gene_id' => 'VC00G110660',
'e_value' => '1e-71',
'bit_score' => '265',
'alignment_length' => '635',
'identity_percentage' => '30.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'PP00109G00830' => array(
'gene_id' => 'PP00109G00830',
'e_value' => '2e-70',
'bit_score' => '262',
'alignment_length' => '556',
'identity_percentage' => '32.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CV00G74030' => array(
'gene_id' => 'CV00G74030',
'e_value' => '3e-70',
'bit_score' => '262',
'alignment_length' => '487',
'identity_percentage' => '34.91',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1039.11c' => array(
'gene_id' => 'SPAC1039.11c',
'e_value' => '5e-70',
'bit_score' => '261',
'alignment_length' => '345',
'identity_percentage' => '40.29',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100017g38' => array(
'gene_id' => 'Naga_100017g38',
'e_value' => '1e-69',
'bit_score' => '260',
'alignment_length' => '718',
'identity_percentage' => '29.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'phs303660' => array(
'gene_id' => 'phs303660',
'e_value' => '2e-69',
'bit_score' => '259',
'alignment_length' => '529',
'identity_percentage' => '31.19',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'SPAC30D11.01c' => array(
'gene_id' => 'SPAC30D11.01c',
'e_value' => '5e-69',
'bit_score' => '258',
'alignment_length' => '420',
'identity_percentage' => '37.86',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'PP00060G00720' => array(
'gene_id' => 'PP00060G00720',
'e_value' => '1e-68',
'bit_score' => '256',
'alignment_length' => '556',
'identity_percentage' => '33.09',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ccr158380' => array(
'gene_id' => 'ccr158380',
'e_value' => '9e-68',
'bit_score' => '254',
'alignment_length' => '654',
'identity_percentage' => '31.04',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'phs71090' => array(
'gene_id' => 'phs71090',
'e_value' => '2e-67',
'bit_score' => '241',
'alignment_length' => '408',
'identity_percentage' => '33.82',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'FC002G01800' => array(
'gene_id' => 'FC002G01800',
'e_value' => '1e-66',
'bit_score' => '248',
'alignment_length' => '667',
'identity_percentage' => '28.79',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0027588' => array(
'gene_id' => 'FBgn0027588',
'e_value' => '4e-66',
'bit_score' => '248',
'alignment_length' => '608',
'identity_percentage' => '31.25',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'TP07G02080' => array(
'gene_id' => 'TP07G02080',
'e_value' => '5e-66',
'bit_score' => '247',
'alignment_length' => '683',
'identity_percentage' => '28.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'CR03G10710' => array(
'gene_id' => 'CR03G10710',
'e_value' => '8e-66',
'bit_score' => '247',
'alignment_length' => '641',
'identity_percentage' => '29.95',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1002.03c' => array(
'gene_id' => 'SPAC1002.03c',
'e_value' => '3e-65',
'bit_score' => '246',
'alignment_length' => '560',
'identity_percentage' => '31.25',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'gsu126010' => array(
'gene_id' => 'gsu126010',
'e_value' => '1e-64',
'bit_score' => '244',
'alignment_length' => '595',
'identity_percentage' => '29.92',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00009583' => array(
'gene_id' => 'WBGene00009583',
'e_value' => '2e-61',
'bit_score' => '233',
'alignment_length' => '652',
'identity_percentage' => '26.53',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G07800' => array(
'gene_id' => 'HE0000G07800',
'e_value' => '8e-61',
'bit_score' => '230',
'alignment_length' => '528',
'identity_percentage' => '31.06',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'YBR229C' => array(
'gene_id' => 'YBR229C',
'e_value' => '3e-57',
'bit_score' => '220',
'alignment_length' => '602',
'identity_percentage' => '28.74',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'CM13G00820' => array(
'gene_id' => 'CM13G00820',
'e_value' => '9e-57',
'bit_score' => '219',
'alignment_length' => '592',
'identity_percentage' => '29.22',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'PTI_05G01610' => array(
'gene_id' => 'PTI_05G01610',
'e_value' => '2e-56',
'bit_score' => '218',
'alignment_length' => '700',
'identity_percentage' => '28.14',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'emh160400' => array(
'gene_id' => 'emh160400',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh626580' => array(
'gene_id' => 'emh626580',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AA0001G01930' => array(
'gene_id' => 'AA0001G01930',
'e_value' => '4e-53',
'bit_score' => '210',
'alignment_length' => '630',
'identity_percentage' => '29.21',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'phs71110' => array(
'gene_id' => 'phs71110',
'e_value' => '3e-50',
'bit_score' => '199',
'alignment_length' => '397',
'identity_percentage' => '34.51',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'CR03G11570' => array(
'gene_id' => 'CR03G11570',
'e_value' => '2e-49',
'bit_score' => '197',
'alignment_length' => '523',
'identity_percentage' => '29.45',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'AP00G19080' => array(
'gene_id' => 'AP00G19080',
'e_value' => '1e-48',
'bit_score' => '194',
'alignment_length' => '424',
'identity_percentage' => '31.84',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'ES0080G00420' => array(
'gene_id' => 'ES0080G00420',
'e_value' => '1e-46',
'bit_score' => '182',
'alignment_length' => '588',
'identity_percentage' => '26.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_034G00560' => array(
'gene_id' => 'CNC64A_034G00560',
'e_value' => '2e-46',
'bit_score' => '183',
'alignment_length' => '601',
'identity_percentage' => '27.79',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'PP00065G00350' => array(
'gene_id' => 'PP00065G00350',
'e_value' => '2e-43',
'bit_score' => '170',
'alignment_length' => '302',
'identity_percentage' => '32.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'emh472720' => array(
'gene_id' => 'emh472720',
'e_value' => '4e-38',
'bit_score' => '160',
'alignment_length' => '590',
'identity_percentage' => '27.46',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_08G02600' => array(
'gene_id' => 'ORCC809_08G02600',
'e_value' => '5e-37',
'bit_score' => '157',
'alignment_length' => '337',
'identity_percentage' => '29.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.199g00040' => array(
'gene_id' => 'RCC4223.199g00040',
'e_value' => '2e-36',
'bit_score' => '154',
'alignment_length' => '550',
'identity_percentage' => '25.27',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'gsu139510' => array(
'gene_id' => 'gsu139510',
'e_value' => '6e-34',
'bit_score' => '146',
'alignment_length' => '616',
'identity_percentage' => '26.30',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_034G00570' => array(
'gene_id' => 'CNC64A_034G00570',
'e_value' => '6e-31',
'bit_score' => '124',
'alignment_length' => '86',
'identity_percentage' => '61.63',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00090' => array(
'gene_id' => 'ATR_00079G00090',
'e_value' => '3e-27',
'bit_score' => '118',
'alignment_length' => '213',
'identity_percentage' => '38.03',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'emh552990' => array(
'gene_id' => 'emh552990',
'e_value' => '7e-21',
'bit_score' => '104',
'alignment_length' => '588',
'identity_percentage' => '23.98',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OT_08G03880' => array(
'gene_id' => 'OT_08G03880',
'e_value' => '8e-15',
'bit_score' => '84.3',
'alignment_length' => '387',
'identity_percentage' => '23.00',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'emh746930' => array(
'gene_id' => 'emh746930',
'e_value' => '3e-14',
'bit_score' => '82.8',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh564800' => array(
'gene_id' => 'emh564800',
'e_value' => '4e-14',
'bit_score' => '82.0',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'gsu133460' => array(
'gene_id' => 'gsu133460',
'e_value' => '2e-13',
'bit_score' => '77.4',
'alignment_length' => '206',
'identity_percentage' => '30.10',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'MP05G04870' => array(
'gene_id' => 'MP05G04870',
'e_value' => '1e-12',
'bit_score' => '77.0',
'alignment_length' => '580',
'identity_percentage' => '22.59',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00095G00110' => array(
'gene_id' => 'ATR_00095G00110',
'e_value' => '2e-12',
'bit_score' => '77.0',
'alignment_length' => '596',
'identity_percentage' => '21.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CM06G01210' => array(
'gene_id' => 'CM06G01210',
'e_value' => '3e-12',
'bit_score' => '76.3',
'alignment_length' => '495',
'identity_percentage' => '21.62',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100114g11' => array(
'gene_id' => 'Naga_100114g11',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '210',
'identity_percentage' => '30.95',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OM_16G02430' => array(
'gene_id' => 'OM_16G02430',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '388',
'identity_percentage' => '22.68',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G03350' => array(
'gene_id' => 'MRCC299_08G03350',
'e_value' => '7e-12',
'bit_score' => '74.7',
'alignment_length' => '590',
'identity_percentage' => '21.86',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OL08G03830' => array(
'gene_id' => 'OL08G03830',
'e_value' => '7e-12',
'bit_score' => '74.3',
'alignment_length' => '506',
'identity_percentage' => '23.12',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_529G00010' => array(
'gene_id' => 'CNC64A_529G00010',
'e_value' => '1e-11',
'bit_score' => '69.3',
'alignment_length' => '85',
'identity_percentage' => '37.65',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_025G00750' => array(
'gene_id' => 'CNC64A_025G00750',
'e_value' => '2e-11',
'bit_score' => '72.4',
'alignment_length' => '171',
'identity_percentage' => '28.07',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'PP00041G01100' => array(
'gene_id' => 'PP00041G01100',
'e_value' => '8e-11',
'bit_score' => '71.2',
'alignment_length' => '600',
'identity_percentage' => '21.83',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'gsu63580' => array(
'gene_id' => 'gsu63580',
'e_value' => '2e-10',
'bit_score' => '70.5',
'alignment_length' => '300',
'identity_percentage' => '23.67',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_01G05990' => array(
'gene_id' => 'BPRRCC1105_01G05990',
'e_value' => '1e-09',
'bit_score' => '67.8',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'emh123040' => array(
'gene_id' => 'emh123040',
'e_value' => '4e-08',
'bit_score' => '62.8',
'alignment_length' => '180',
'identity_percentage' => '27.22',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OM_03G03260' => array(
'gene_id' => 'OM_03G03260',
'e_value' => '5e-08',
'bit_score' => '62.0',
'alignment_length' => '197',
'identity_percentage' => '28.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0261575' => array(
'gene_id' => 'FBgn0261575',
'e_value' => '7e-08',
'bit_score' => '61.6',
'alignment_length' => '197',
'identity_percentage' => '26.90',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'emh362880' => array(
'gene_id' => 'emh362880',
'e_value' => '9e-08',
'bit_score' => '61.6',
'alignment_length' => '156',
'identity_percentage' => '28.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'FC006G00220' => array(
'gene_id' => 'FC006G00220',
'e_value' => '5e-07',
'bit_score' => '58.9',
'alignment_length' => '308',
'identity_percentage' => '22.73',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G02780' => array(
'gene_id' => 'ORCC809_04G02780',
'e_value' => '9e-07',
'bit_score' => '57.4',
'alignment_length' => '212',
'identity_percentage' => '26.42',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_12G00530' => array(
'gene_id' => 'ORCC809_12G00530',
'e_value' => '9e-07',
'bit_score' => '58.2',
'alignment_length' => '364',
'identity_percentage' => '24.18',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000027790',
(int) 1 => 'ENSMUSG00000068587',
(int) 2 => 'ENSMUSG00000062646',
(int) 3 => 'ENSMUSG00000071650'
),
'hom' => array(
(int) 0 => 'ENSG00000090402',
(int) 1 => 'ENSG00000257335',
(int) 2 => 'ENSG00000278563',
(int) 3 => 'ENSG00000257743',
(int) 4 => 'ENSG00000214013'
),
'cel' => array(
(int) 0 => 'WBGene00017071',
(int) 1 => 'WBGene00019895',
(int) 2 => 'WBGene00018682',
(int) 3 => 'WBGene00009583'
),
'ddi' => array(
(int) 0 => 'DDB_G0269790',
(int) 1 => 'DDB_G0269154'
),
'ppa' => array(
(int) 0 => 'PP00264G00160',
(int) 1 => 'PP00013G02430',
(int) 2 => 'PP00119G00640',
(int) 3 => 'PP00086G00660',
(int) 4 => 'PP00011G01860',
(int) 5 => 'PP00025G00520',
(int) 6 => 'PP00043G00100',
(int) 7 => 'PP00080G01120',
(int) 8 => 'PP00006G00120',
(int) 9 => 'PP00245G00510',
(int) 10 => 'PP00157G00350',
(int) 11 => 'PP00264G00120',
(int) 12 => 'PP00281G00070',
(int) 13 => 'PP00005G01250',
(int) 14 => 'PP00041G01080',
(int) 15 => 'PP00140G00390',
(int) 16 => 'PP00242G00250',
(int) 17 => 'PP00109G00830',
(int) 18 => 'PP00060G00720',
(int) 19 => 'PP00065G00350',
(int) 20 => 'PP00041G01100'
),
'phs' => array(
(int) 0 => 'phs293220',
(int) 1 => 'phs293240',
(int) 2 => 'phs92320',
(int) 3 => 'phs303660',
(int) 4 => 'phs71090',
(int) 5 => 'phs71110'
),
'osa' => array(
(int) 0 => 'OS06G46340',
(int) 1 => 'OS06G46284',
(int) 2 => 'OS01G03950',
(int) 3 => 'OS07G23880',
(int) 4 => 'OS03G11720',
(int) 5 => 'OS07G23944'
),
'ath' => array(
(int) 0 => 'AT5G11720',
(int) 1 => 'AT3G45940',
(int) 2 => 'AT1G68560',
(int) 3 => 'AT3G23640',
(int) 4 => 'AT5G63840'
),
'atr' => array(
(int) 0 => 'ATR_00092G00960',
(int) 1 => 'ATR_00079G00110',
(int) 2 => 'ATR_00079G00080',
(int) 3 => 'ATR_00065G01570',
(int) 4 => 'ATR_00048G01310',
(int) 5 => 'ATR_00079G00090',
(int) 6 => 'ATR_00095G00110'
),
'acg' => array(
(int) 0 => 'AC00G97780',
(int) 1 => 'AC00G02390',
(int) 2 => 'AC00G77390'
),
'cvu' => array(
(int) 0 => 'CV00G66180',
(int) 1 => 'CV00G33310',
(int) 2 => 'CV00G87890',
(int) 3 => 'CV00G66200',
(int) 4 => 'CV00G24690',
(int) 5 => 'CV00G74030'
),
'apr' => array(
(int) 0 => 'AP00G35250',
(int) 1 => 'AP00G19080'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_008G02740',
(int) 1 => 'CNC64A_019G00790',
(int) 2 => 'CNC64A_034G00560',
(int) 3 => 'CNC64A_034G00570',
(int) 4 => 'CNC64A_025G00750'
),
'hsp' => array(
(int) 0 => 'HE0000G25410',
(int) 1 => 'HE0000G07800'
),
'pte' => array(
(int) 0 => 'pte374950',
(int) 1 => 'pte268290',
(int) 2 => 'pte323710',
(int) 3 => 'pte186640',
(int) 4 => 'pte388210',
(int) 5 => 'pte180100',
(int) 6 => 'pte70280'
),
'ota' => array(
(int) 0 => 'OT_08G02830',
(int) 1 => 'OT_08G03880'
),
'ome' => array(
(int) 0 => 'OM_16G01380',
(int) 1 => 'OM_16G02430',
(int) 2 => 'OM_03G03260'
),
'olu' => array(
(int) 0 => 'OL08G02650',
(int) 1 => 'OL08G03830'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G05390',
(int) 1 => 'MRCC299_08G03350'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_01G07160',
(int) 1 => 'BPRRCC1105_01G05990'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.04g01620',
(int) 1 => 'RCC4223.199g00040'
),
'pse3' => array(
(int) 0 => 'PI00G24040'
),
'mpu' => array(
(int) 0 => 'MP05G06760',
(int) 1 => 'MP05G04870'
),
'scp' => array(
(int) 0 => 'SPAPB24D3.10c',
(int) 1 => 'SPAC1039.11c',
(int) 2 => 'SPAC30D11.01c',
(int) 3 => 'SPAC1002.03c'
),
'vca' => array(
(int) 0 => 'VC00G110660'
),
'nga' => array(
(int) 0 => 'Naga_100017g38',
(int) 1 => 'Naga_100114g11'
),
'ccr' => array(
(int) 0 => 'ccr158380'
),
'fcy' => array(
(int) 0 => 'FC002G01800',
(int) 1 => 'FC006G00220'
),
'drm' => array(
(int) 0 => 'FBgn0027588',
(int) 1 => 'FBgn0261575'
),
'tps' => array(
(int) 0 => 'TP07G02080'
),
'cre' => array(
(int) 0 => 'CR03G10710',
(int) 1 => 'CR03G11570'
),
'gsu' => array(
(int) 0 => 'gsu126010',
(int) 1 => 'gsu139510',
(int) 2 => 'gsu133460',
(int) 3 => 'gsu63580'
),
'sac' => array(
(int) 0 => 'YBR229C'
),
'cme' => array(
(int) 0 => 'CM13G00820',
(int) 1 => 'CM06G01210'
),
'ptri' => array(
(int) 0 => 'PTI_05G01610'
),
'emh' => array(
(int) 0 => 'emh160400',
(int) 1 => 'emh626580',
(int) 2 => 'emh472720',
(int) 3 => 'emh552990',
(int) 4 => 'emh746930',
(int) 5 => 'emh564800',
(int) 6 => 'emh123040',
(int) 7 => 'emh362880'
),
'aan' => array(
(int) 0 => 'AA0001G01930'
),
'esi' => array(
(int) 0 => 'ES0080G00420'
),
'orcc809' => array(
(int) 0 => 'ORCC809_08G02600',
(int) 1 => 'ORCC809_04G02780',
(int) 2 => 'ORCC809_12G00530'
)
),
'gene_id' => 'ENSMUSG00000027790',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000027790',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'CNC64A_011G02000',
'gf_placeholder' => 'HOM03P008161',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000027790' => array(
'gene_id' => 'ENSMUSG00000027790',
'e_value' => '0.0',
'bit_score' => '3805',
'alignment_length' => '1819',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000090402' => array(
'gene_id' => 'ENSG00000090402',
'e_value' => '0.0',
'bit_score' => '3035',
'alignment_length' => '1829',
'identity_percentage' => '77.75',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000257335' => array(
'gene_id' => 'ENSG00000257335',
'e_value' => '0.0',
'bit_score' => '2266',
'alignment_length' => '1861',
'identity_percentage' => '57.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSMUSG00000068587' => array(
'gene_id' => 'ENSMUSG00000068587',
'e_value' => '0.0',
'bit_score' => '2265',
'alignment_length' => '1766',
'identity_percentage' => '60.25',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000278563' => array(
'gene_id' => 'ENSG00000278563',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000257743' => array(
'gene_id' => 'ENSG00000257743',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'WBGene00017071' => array(
'gene_id' => 'WBGene00017071',
'e_value' => '6e-174',
'bit_score' => '559',
'alignment_length' => '861',
'identity_percentage' => '38.79',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'DDB_G0269790' => array(
'gene_id' => 'DDB_G0269790',
'e_value' => '4e-168',
'bit_score' => '541',
'alignment_length' => '863',
'identity_percentage' => '38.59',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00264G00160' => array(
'gene_id' => 'PP00264G00160',
'e_value' => '1e-166',
'bit_score' => '538',
'alignment_length' => '902',
'identity_percentage' => '35.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00013G02430' => array(
'gene_id' => 'PP00013G02430',
'e_value' => '4e-166',
'bit_score' => '537',
'alignment_length' => '866',
'identity_percentage' => '36.03',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'WBGene00019895' => array(
'gene_id' => 'WBGene00019895',
'e_value' => '8e-165',
'bit_score' => '535',
'alignment_length' => '889',
'identity_percentage' => '38.36',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00119G00640' => array(
'gene_id' => 'PP00119G00640',
'e_value' => '4e-163',
'bit_score' => '529',
'alignment_length' => '871',
'identity_percentage' => '35.71',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00086G00660' => array(
'gene_id' => 'PP00086G00660',
'e_value' => '2e-161',
'bit_score' => '523',
'alignment_length' => '852',
'identity_percentage' => '36.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00011G01860' => array(
'gene_id' => 'PP00011G01860',
'e_value' => '3e-159',
'bit_score' => '518',
'alignment_length' => '881',
'identity_percentage' => '35.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'phs293220' => array(
'gene_id' => 'phs293220',
'e_value' => '4e-159',
'bit_score' => '518',
'alignment_length' => '866',
'identity_percentage' => '35.45',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00025G00520' => array(
'gene_id' => 'PP00025G00520',
'e_value' => '1e-158',
'bit_score' => '517',
'alignment_length' => '897',
'identity_percentage' => '34.89',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'OS06G46340' => array(
'gene_id' => 'OS06G46340',
'e_value' => '7e-158',
'bit_score' => '514',
'alignment_length' => '801',
'identity_percentage' => '37.83',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AT5G11720' => array(
'gene_id' => 'AT5G11720',
'e_value' => '4e-157',
'bit_score' => '512',
'alignment_length' => '773',
'identity_percentage' => '38.42',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'OS06G46284' => array(
'gene_id' => 'OS06G46284',
'e_value' => '7e-157',
'bit_score' => '511',
'alignment_length' => '876',
'identity_percentage' => '35.96',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'phs293240' => array(
'gene_id' => 'phs293240',
'e_value' => '2e-155',
'bit_score' => '513',
'alignment_length' => '867',
'identity_percentage' => '34.95',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00043G00100' => array(
'gene_id' => 'PP00043G00100',
'e_value' => '3e-150',
'bit_score' => '493',
'alignment_length' => '874',
'identity_percentage' => '35.13',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00080G01120' => array(
'gene_id' => 'PP00080G01120',
'e_value' => '3e-150',
'bit_score' => '494',
'alignment_length' => '901',
'identity_percentage' => '34.18',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ATR_00092G00960' => array(
'gene_id' => 'ATR_00092G00960',
'e_value' => '3e-146',
'bit_score' => '480',
'alignment_length' => '747',
'identity_percentage' => '37.75',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'OS01G03950' => array(
'gene_id' => 'OS01G03950',
'e_value' => '9e-145',
'bit_score' => '479',
'alignment_length' => '928',
'identity_percentage' => '34.59',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AT3G45940' => array(
'gene_id' => 'AT3G45940',
'e_value' => '2e-144',
'bit_score' => '476',
'alignment_length' => '819',
'identity_percentage' => '37.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00006G00120' => array(
'gene_id' => 'PP00006G00120',
'e_value' => '3e-144',
'bit_score' => '477',
'alignment_length' => '919',
'identity_percentage' => '33.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AT1G68560' => array(
'gene_id' => 'AT1G68560',
'e_value' => '1e-143',
'bit_score' => '475',
'alignment_length' => '891',
'identity_percentage' => '34.23',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00245G00510' => array(
'gene_id' => 'PP00245G00510',
'e_value' => '5e-142',
'bit_score' => '470',
'alignment_length' => '874',
'identity_percentage' => '34.44',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00157G00350' => array(
'gene_id' => 'PP00157G00350',
'e_value' => '6e-142',
'bit_score' => '471',
'alignment_length' => '903',
'identity_percentage' => '32.56',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00264G00120' => array(
'gene_id' => 'PP00264G00120',
'e_value' => '2e-140',
'bit_score' => '468',
'alignment_length' => '876',
'identity_percentage' => '33.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ATR_00079G00110' => array(
'gene_id' => 'ATR_00079G00110',
'e_value' => '1e-136',
'bit_score' => '451',
'alignment_length' => '714',
'identity_percentage' => '37.68',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AC00G97780' => array(
'gene_id' => 'AC00G97780',
'e_value' => '2e-123',
'bit_score' => '416',
'alignment_length' => '731',
'identity_percentage' => '35.57',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G66180' => array(
'gene_id' => 'CV00G66180',
'e_value' => '4e-123',
'bit_score' => '417',
'alignment_length' => '732',
'identity_percentage' => '36.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G33310' => array(
'gene_id' => 'CV00G33310',
'e_value' => '6e-121',
'bit_score' => '412',
'alignment_length' => '970',
'identity_percentage' => '30.41',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G87890' => array(
'gene_id' => 'CV00G87890',
'e_value' => '5e-119',
'bit_score' => '402',
'alignment_length' => '779',
'identity_percentage' => '34.66',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AP00G35250' => array(
'gene_id' => 'AP00G35250',
'e_value' => '3e-116',
'bit_score' => '401',
'alignment_length' => '787',
'identity_percentage' => '33.04',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CNC64A_008G02740' => array(
'gene_id' => 'CNC64A_008G02740',
'e_value' => '1e-112',
'bit_score' => '396',
'alignment_length' => '850',
'identity_percentage' => '33.18',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ATR_00079G00080' => array(
'gene_id' => 'ATR_00079G00080',
'e_value' => '3e-106',
'bit_score' => '360',
'alignment_length' => '585',
'identity_percentage' => '37.95',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'HE0000G25410' => array(
'gene_id' => 'HE0000G25410',
'e_value' => '2e-103',
'bit_score' => '353',
'alignment_length' => '675',
'identity_percentage' => '32.59',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G66200' => array(
'gene_id' => 'CV00G66200',
'e_value' => '5e-103',
'bit_score' => '352',
'alignment_length' => '678',
'identity_percentage' => '34.22',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte374950' => array(
'gene_id' => 'pte374950',
'e_value' => '2e-100',
'bit_score' => '348',
'alignment_length' => '829',
'identity_percentage' => '30.40',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AC00G02390' => array(
'gene_id' => 'AC00G02390',
'e_value' => '2e-99',
'bit_score' => '340',
'alignment_length' => '593',
'identity_percentage' => '34.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte268290' => array(
'gene_id' => 'pte268290',
'e_value' => '2e-99',
'bit_score' => '346',
'alignment_length' => '796',
'identity_percentage' => '31.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte323710' => array(
'gene_id' => 'pte323710',
'e_value' => '7e-99',
'bit_score' => '344',
'alignment_length' => '853',
'identity_percentage' => '28.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte186640' => array(
'gene_id' => 'pte186640',
'e_value' => '7e-98',
'bit_score' => '342',
'alignment_length' => '792',
'identity_percentage' => '30.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte388210' => array(
'gene_id' => 'pte388210',
'e_value' => '3e-97',
'bit_score' => '340',
'alignment_length' => '843',
'identity_percentage' => '28.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000214013' => array(
'gene_id' => 'ENSG00000214013',
'e_value' => '3e-87',
'bit_score' => '313',
'alignment_length' => '700',
'identity_percentage' => '31.14',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OT_08G02830' => array(
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'e_value' => '8e-86',
'bit_score' => '309',
'alignment_length' => '587',
'identity_percentage' => '33.05',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ENSMUSG00000062646' => array(
'gene_id' => 'ENSMUSG00000062646',
'e_value' => '1e-85',
'bit_score' => '308',
'alignment_length' => '810',
'identity_percentage' => '30.12',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OM_16G01380' => array(
'gene_id' => 'OM_16G01380',
'e_value' => '8e-85',
'bit_score' => '306',
'alignment_length' => '549',
'identity_percentage' => '33.15',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OL08G02650' => array(
'gene_id' => 'OL08G02650',
'e_value' => '2e-84',
'bit_score' => '301',
'alignment_length' => '579',
'identity_percentage' => '31.95',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'AC00G77390' => array(
'gene_id' => 'AC00G77390',
'e_value' => '6e-80',
'bit_score' => '290',
'alignment_length' => '616',
'identity_percentage' => '31.49',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OS07G23880' => array(
'gene_id' => 'OS07G23880',
'e_value' => '9e-80',
'bit_score' => '292',
'alignment_length' => '598',
'identity_percentage' => '33.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'MRCC299_08G05390' => array(
'gene_id' => 'MRCC299_08G05390',
'e_value' => '1e-78',
'bit_score' => '287',
'alignment_length' => '542',
'identity_percentage' => '32.47',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'AT3G23640' => array(
'gene_id' => 'AT3G23640',
'e_value' => '1e-78',
'bit_score' => '288',
'alignment_length' => '556',
'identity_percentage' => '34.71',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'phs92320' => array(
'gene_id' => 'phs92320',
'e_value' => '5e-78',
'bit_score' => '288',
'alignment_length' => '502',
'identity_percentage' => '36.06',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P174336'
)
),
'WBGene00018682' => array(
'gene_id' => 'WBGene00018682',
'e_value' => '5e-78',
'bit_score' => '285',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00281G00070' => array(
'gene_id' => 'PP00281G00070',
'e_value' => '7e-78',
'bit_score' => '274',
'alignment_length' => '498',
'identity_percentage' => '34.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CNC64A_019G00790' => array(
'gene_id' => 'CNC64A_019G00790',
'e_value' => '2e-77',
'bit_score' => '267',
'alignment_length' => '359',
'identity_percentage' => '40.11',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P080455'
)
),
'ATR_00065G01570' => array(
'gene_id' => 'ATR_00065G01570',
'e_value' => '1e-76',
'bit_score' => '280',
'alignment_length' => '634',
'identity_percentage' => '31.23',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00005G01250' => array(
'gene_id' => 'PP00005G01250',
'e_value' => '5e-76',
'bit_score' => '281',
'alignment_length' => '571',
'identity_percentage' => '33.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'pte180100' => array(
'gene_id' => 'pte180100',
'e_value' => '9e-76',
'bit_score' => '278',
'alignment_length' => '679',
'identity_percentage' => '29.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P050433'
)
),
'OS03G11720' => array(
'gene_id' => 'OS03G11720',
'e_value' => '2e-75',
'bit_score' => '276',
'alignment_length' => '657',
'identity_percentage' => '30.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'pte70280' => array(
'gene_id' => 'pte70280',
'e_value' => '4e-75',
'bit_score' => '275',
'alignment_length' => '733',
'identity_percentage' => '28.24',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P050433'
)
),
'AT5G63840' => array(
'gene_id' => 'AT5G63840',
'e_value' => '2e-74',
'bit_score' => '274',
'alignment_length' => '650',
'identity_percentage' => '31.38',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CV00G24690' => array(
'gene_id' => 'CV00G24690',
'e_value' => '3e-74',
'bit_score' => '273',
'alignment_length' => '640',
'identity_percentage' => '31.25',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ENSMUSG00000071650' => array(
'gene_id' => 'ENSMUSG00000071650',
'e_value' => '3e-74',
'bit_score' => '274',
'alignment_length' => '617',
'identity_percentage' => '31.28',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'BPRRCC1105_01G07160' => array(
'gene_id' => 'BPRRCC1105_01G07160',
'e_value' => '4e-74',
'bit_score' => '274',
'alignment_length' => '521',
'identity_percentage' => '31.86',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00041G01080' => array(
'gene_id' => 'PP00041G01080',
'e_value' => '4e-74',
'bit_score' => '275',
'alignment_length' => '572',
'identity_percentage' => '33.22',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'RCC4223.04g01620' => array(
'gene_id' => 'RCC4223.04g01620',
'e_value' => '5e-74',
'bit_score' => '273',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PI00G24040' => array(
'gene_id' => 'PI00G24040',
'e_value' => '2e-73',
'bit_score' => '271',
'alignment_length' => '640',
'identity_percentage' => '30.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ATR_00048G01310' => array(
'gene_id' => 'ATR_00048G01310',
'e_value' => '4e-73',
'bit_score' => '271',
'alignment_length' => '684',
'identity_percentage' => '31.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'OS07G23944' => array(
'gene_id' => 'OS07G23944',
'e_value' => '4e-73',
'bit_score' => '270',
'alignment_length' => '675',
'identity_percentage' => '31.70',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'MP05G06760' => array(
'gene_id' => 'MP05G06760',
'e_value' => '7e-73',
'bit_score' => '270',
'alignment_length' => '549',
'identity_percentage' => '32.06',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'SPAPB24D3.10c' => array(
'gene_id' => 'SPAPB24D3.10c',
'e_value' => '1e-72',
'bit_score' => '269',
'alignment_length' => '358',
'identity_percentage' => '41.62',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'DDB_G0269154' => array(
'gene_id' => 'DDB_G0269154',
'e_value' => '1e-72',
'bit_score' => '268',
'alignment_length' => '691',
'identity_percentage' => '29.96',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00140G00390' => array(
'gene_id' => 'PP00140G00390',
'e_value' => '2e-72',
'bit_score' => '269',
'alignment_length' => '558',
'identity_percentage' => '33.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'PP00242G00250' => array(
'gene_id' => 'PP00242G00250',
'e_value' => '3e-72',
'bit_score' => '268',
'alignment_length' => '592',
'identity_percentage' => '31.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'VC00G110660' => array(
'gene_id' => 'VC00G110660',
'e_value' => '1e-71',
'bit_score' => '265',
'alignment_length' => '635',
'identity_percentage' => '30.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00109G00830' => array(
'gene_id' => 'PP00109G00830',
'e_value' => '2e-70',
'bit_score' => '262',
'alignment_length' => '556',
'identity_percentage' => '32.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CV00G74030' => array(
'gene_id' => 'CV00G74030',
'e_value' => '3e-70',
'bit_score' => '262',
'alignment_length' => '487',
'identity_percentage' => '34.91',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'SPAC1039.11c' => array(
'gene_id' => 'SPAC1039.11c',
'e_value' => '5e-70',
'bit_score' => '261',
'alignment_length' => '345',
'identity_percentage' => '40.29',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'Naga_100017g38' => array(
'gene_id' => 'Naga_100017g38',
'e_value' => '1e-69',
'bit_score' => '260',
'alignment_length' => '718',
'identity_percentage' => '29.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'phs303660' => array(
'gene_id' => 'phs303660',
'e_value' => '2e-69',
'bit_score' => '259',
'alignment_length' => '529',
'identity_percentage' => '31.19',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'SPAC30D11.01c' => array(
'gene_id' => 'SPAC30D11.01c',
'e_value' => '5e-69',
'bit_score' => '258',
'alignment_length' => '420',
'identity_percentage' => '37.86',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00060G00720' => array(
'gene_id' => 'PP00060G00720',
'e_value' => '1e-68',
'bit_score' => '256',
'alignment_length' => '556',
'identity_percentage' => '33.09',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'ccr158380' => array(
'gene_id' => 'ccr158380',
'e_value' => '9e-68',
'bit_score' => '254',
'alignment_length' => '654',
'identity_percentage' => '31.04',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'phs71090' => array(
'gene_id' => 'phs71090',
'e_value' => '2e-67',
'bit_score' => '241',
'alignment_length' => '408',
'identity_percentage' => '33.82',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P104467'
)
),
'FC002G01800' => array(
'gene_id' => 'FC002G01800',
'e_value' => '1e-66',
'bit_score' => '248',
'alignment_length' => '667',
'identity_percentage' => '28.79',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'FBgn0027588' => array(
'gene_id' => 'FBgn0027588',
'e_value' => '4e-66',
'bit_score' => '248',
'alignment_length' => '608',
'identity_percentage' => '31.25',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'TP07G02080' => array(
'gene_id' => 'TP07G02080',
'e_value' => '5e-66',
'bit_score' => '247',
'alignment_length' => '683',
'identity_percentage' => '28.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CR03G10710' => array(
'gene_id' => 'CR03G10710',
'e_value' => '8e-66',
'bit_score' => '247',
'alignment_length' => '641',
'identity_percentage' => '29.95',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'SPAC1002.03c' => array(
'gene_id' => 'SPAC1002.03c',
'e_value' => '3e-65',
'bit_score' => '246',
'alignment_length' => '560',
'identity_percentage' => '31.25',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'gsu126010' => array(
'gene_id' => 'gsu126010',
'e_value' => '1e-64',
'bit_score' => '244',
'alignment_length' => '595',
'identity_percentage' => '29.92',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'WBGene00009583' => array(
'gene_id' => 'WBGene00009583',
'e_value' => '2e-61',
'bit_score' => '233',
'alignment_length' => '652',
'identity_percentage' => '26.53',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'HE0000G07800' => array(
'gene_id' => 'HE0000G07800',
'e_value' => '8e-61',
'bit_score' => '230',
'alignment_length' => '528',
'identity_percentage' => '31.06',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'YBR229C' => array(
'gene_id' => 'YBR229C',
'e_value' => '3e-57',
'bit_score' => '220',
'alignment_length' => '602',
'identity_percentage' => '28.74',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CM13G00820' => array(
'gene_id' => 'CM13G00820',
'e_value' => '9e-57',
'bit_score' => '219',
'alignment_length' => '592',
'identity_percentage' => '29.22',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PTI_05G01610' => array(
'gene_id' => 'PTI_05G01610',
'e_value' => '2e-56',
'bit_score' => '218',
'alignment_length' => '700',
'identity_percentage' => '28.14',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'emh160400' => array(
'gene_id' => 'emh160400',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'emh626580' => array(
'gene_id' => 'emh626580',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'AA0001G01930' => array(
'gene_id' => 'AA0001G01930',
'e_value' => '4e-53',
'bit_score' => '210',
'alignment_length' => '630',
'identity_percentage' => '29.21',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'phs71110' => array(
'gene_id' => 'phs71110',
'e_value' => '3e-50',
'bit_score' => '199',
'alignment_length' => '397',
'identity_percentage' => '34.51',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P051673'
)
),
'CR03G11570' => array(
'gene_id' => 'CR03G11570',
'e_value' => '2e-49',
'bit_score' => '197',
'alignment_length' => '523',
'identity_percentage' => '29.45',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AP00G19080' => array(
'gene_id' => 'AP00G19080',
'e_value' => '1e-48',
'bit_score' => '194',
'alignment_length' => '424',
'identity_percentage' => '31.84',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ES0080G00420' => array(
'gene_id' => 'ES0080G00420',
'e_value' => '1e-46',
'bit_score' => '182',
'alignment_length' => '588',
'identity_percentage' => '26.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CNC64A_034G00560' => array(
'gene_id' => 'CNC64A_034G00560',
'e_value' => '2e-46',
'bit_score' => '183',
'alignment_length' => '601',
'identity_percentage' => '27.79',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P158659'
)
),
'PP00065G00350' => array(
'gene_id' => 'PP00065G00350',
'e_value' => '2e-43',
'bit_score' => '170',
'alignment_length' => '302',
'identity_percentage' => '32.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P159804'
)
),
'emh472720' => array(
'gene_id' => 'emh472720',
'e_value' => '4e-38',
'bit_score' => '160',
'alignment_length' => '590',
'identity_percentage' => '27.46',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P209776'
)
),
'ORCC809_08G02600' => array(
'gene_id' => 'ORCC809_08G02600',
'e_value' => '5e-37',
'bit_score' => '157',
'alignment_length' => '337',
'identity_percentage' => '29.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'RCC4223.199g00040' => array(
'gene_id' => 'RCC4223.199g00040',
'e_value' => '2e-36',
'bit_score' => '154',
'alignment_length' => '550',
'identity_percentage' => '25.27',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'gsu139510' => array(
'gene_id' => 'gsu139510',
'e_value' => '6e-34',
'bit_score' => '146',
'alignment_length' => '616',
'identity_percentage' => '26.30',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'CNC64A_034G00570' => array(
'gene_id' => 'CNC64A_034G00570',
'e_value' => '6e-31',
'bit_score' => '124',
'alignment_length' => '86',
'identity_percentage' => '61.63',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P113797'
)
),
'ATR_00079G00090' => array(
'gene_id' => 'ATR_00079G00090',
'e_value' => '3e-27',
'bit_score' => '118',
'alignment_length' => '213',
'identity_percentage' => '38.03',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P186939'
)
),
'emh552990' => array(
'gene_id' => 'emh552990',
'e_value' => '7e-21',
'bit_score' => '104',
'alignment_length' => '588',
'identity_percentage' => '23.98',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P201802'
)
),
'OT_08G03880' => array(
'gene_id' => 'OT_08G03880',
'e_value' => '8e-15',
'bit_score' => '84.3',
'alignment_length' => '387',
'identity_percentage' => '23.00',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'emh746930' => array(
'gene_id' => 'emh746930',
'e_value' => '3e-14',
'bit_score' => '82.8',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'emh564800' => array(
'gene_id' => 'emh564800',
'e_value' => '4e-14',
'bit_score' => '82.0',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'gsu133460' => array(
'gene_id' => 'gsu133460',
'e_value' => '2e-13',
'bit_score' => '77.4',
'alignment_length' => '206',
'identity_percentage' => '30.10',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'MP05G04870' => array(
'gene_id' => 'MP05G04870',
'e_value' => '1e-12',
'bit_score' => '77.0',
'alignment_length' => '580',
'identity_percentage' => '22.59',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'ATR_00095G00110' => array(
'gene_id' => 'ATR_00095G00110',
'e_value' => '2e-12',
'bit_score' => '77.0',
'alignment_length' => '596',
'identity_percentage' => '21.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'CM06G01210' => array(
'gene_id' => 'CM06G01210',
'e_value' => '3e-12',
'bit_score' => '76.3',
'alignment_length' => '495',
'identity_percentage' => '21.62',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P020542'
)
),
'Naga_100114g11' => array(
'gene_id' => 'Naga_100114g11',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '210',
'identity_percentage' => '30.95',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'OM_16G02430' => array(
'gene_id' => 'OM_16G02430',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '388',
'identity_percentage' => '22.68',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'MRCC299_08G03350' => array(
'gene_id' => 'MRCC299_08G03350',
'e_value' => '7e-12',
'bit_score' => '74.7',
'alignment_length' => '590',
'identity_percentage' => '21.86',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'OL08G03830' => array(
'gene_id' => 'OL08G03830',
'e_value' => '7e-12',
'bit_score' => '74.3',
'alignment_length' => '506',
'identity_percentage' => '23.12',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'CNC64A_529G00010' => array(
'gene_id' => 'CNC64A_529G00010',
'e_value' => '1e-11',
'bit_score' => '69.3',
'alignment_length' => '85',
'identity_percentage' => '37.65',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P106179'
)
),
'CNC64A_025G00750' => array(
'gene_id' => 'CNC64A_025G00750',
'e_value' => '2e-11',
'bit_score' => '72.4',
'alignment_length' => '171',
'identity_percentage' => '28.07',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00041G01100' => array(
'gene_id' => 'PP00041G01100',
'e_value' => '8e-11',
'bit_score' => '71.2',
'alignment_length' => '600',
'identity_percentage' => '21.83',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'gsu63580' => array(
'gene_id' => 'gsu63580',
'e_value' => '2e-10',
'bit_score' => '70.5',
'alignment_length' => '300',
'identity_percentage' => '23.67',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P020542'
)
),
'BPRRCC1105_01G05990' => array(
'gene_id' => 'BPRRCC1105_01G05990',
'e_value' => '1e-09',
'bit_score' => '67.8',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'emh123040' => array(
'gene_id' => 'emh123040',
'e_value' => '4e-08',
'bit_score' => '62.8',
'alignment_length' => '180',
'identity_percentage' => '27.22',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P048023'
)
),
'OM_03G03260' => array(
'gene_id' => 'OM_03G03260',
'e_value' => '5e-08',
'bit_score' => '62.0',
'alignment_length' => '197',
'identity_percentage' => '28.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P003722',
'ORTHOFAM' => 'ORTHO03P003860'
)
),
'FBgn0261575' => array(
'gene_id' => 'FBgn0261575',
'e_value' => '7e-08',
'bit_score' => '61.6',
'alignment_length' => '197',
'identity_percentage' => '26.90',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P003722',
'ORTHOFAM' => 'ORTHO03P003860'
)
),
'emh362880' => array(
'gene_id' => 'emh362880',
'e_value' => '9e-08',
'bit_score' => '61.6',
'alignment_length' => '156',
'identity_percentage' => '28.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P048023'
)
),
'FC006G00220' => array(
'gene_id' => 'FC006G00220',
'e_value' => '5e-07',
'bit_score' => '58.9',
'alignment_length' => '308',
'identity_percentage' => '22.73',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P020542'
)
),
'ORCC809_04G02780' => array(
'gene_id' => 'ORCC809_04G02780',
'e_value' => '9e-07',
'bit_score' => '57.4',
'alignment_length' => '212',
'identity_percentage' => '26.42',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P003722',
'ORTHOFAM' => 'ORTHO03P003860'
)
),
'ORCC809_12G00530' => array(
'gene_id' => 'ORCC809_12G00530',
'e_value' => '9e-07',
'bit_score' => '58.2',
'alignment_length' => '364',
'identity_percentage' => '24.18',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000027790',
(int) 1 => 'ENSMUSG00000068587',
(int) 2 => 'ENSMUSG00000062646',
(int) 3 => 'ENSMUSG00000071650'
),
'hom' => array(
(int) 0 => 'ENSG00000090402',
(int) 1 => 'ENSG00000257335',
(int) 2 => 'ENSG00000278563',
(int) 3 => 'ENSG00000257743',
(int) 4 => 'ENSG00000214013'
),
'cel' => array(
(int) 0 => 'WBGene00017071',
(int) 1 => 'WBGene00019895',
(int) 2 => 'WBGene00018682',
(int) 3 => 'WBGene00009583'
),
'ddi' => array(
(int) 0 => 'DDB_G0269790',
(int) 1 => 'DDB_G0269154'
),
'ppa' => array(
(int) 0 => 'PP00264G00160',
(int) 1 => 'PP00013G02430',
(int) 2 => 'PP00119G00640',
(int) 3 => 'PP00086G00660',
(int) 4 => 'PP00011G01860',
(int) 5 => 'PP00025G00520',
(int) 6 => 'PP00043G00100',
(int) 7 => 'PP00080G01120',
(int) 8 => 'PP00006G00120',
(int) 9 => 'PP00245G00510',
(int) 10 => 'PP00157G00350',
(int) 11 => 'PP00264G00120',
(int) 12 => 'PP00281G00070',
(int) 13 => 'PP00005G01250',
(int) 14 => 'PP00041G01080',
(int) 15 => 'PP00140G00390',
(int) 16 => 'PP00242G00250',
(int) 17 => 'PP00109G00830',
(int) 18 => 'PP00060G00720',
(int) 19 => 'PP00065G00350',
(int) 20 => 'PP00041G01100'
),
'phs' => array(
(int) 0 => 'phs293220',
(int) 1 => 'phs293240',
(int) 2 => 'phs92320',
(int) 3 => 'phs303660',
(int) 4 => 'phs71090',
(int) 5 => 'phs71110'
),
'osa' => array(
(int) 0 => 'OS06G46340',
(int) 1 => 'OS06G46284',
(int) 2 => 'OS01G03950',
(int) 3 => 'OS07G23880',
(int) 4 => 'OS03G11720',
(int) 5 => 'OS07G23944'
),
'ath' => array(
(int) 0 => 'AT5G11720',
(int) 1 => 'AT3G45940',
(int) 2 => 'AT1G68560',
(int) 3 => 'AT3G23640',
(int) 4 => 'AT5G63840'
),
'atr' => array(
(int) 0 => 'ATR_00092G00960',
(int) 1 => 'ATR_00079G00110',
(int) 2 => 'ATR_00079G00080',
(int) 3 => 'ATR_00065G01570',
(int) 4 => 'ATR_00048G01310',
(int) 5 => 'ATR_00079G00090',
(int) 6 => 'ATR_00095G00110'
),
'acg' => array(
(int) 0 => 'AC00G97780',
(int) 1 => 'AC00G02390',
(int) 2 => 'AC00G77390'
),
'cvu' => array(
(int) 0 => 'CV00G66180',
(int) 1 => 'CV00G33310',
(int) 2 => 'CV00G87890',
(int) 3 => 'CV00G66200',
(int) 4 => 'CV00G24690',
(int) 5 => 'CV00G74030'
),
'apr' => array(
(int) 0 => 'AP00G35250',
(int) 1 => 'AP00G19080'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_008G02740',
(int) 1 => 'CNC64A_019G00790',
(int) 2 => 'CNC64A_034G00560',
(int) 3 => 'CNC64A_034G00570',
(int) 4 => 'CNC64A_025G00750'
),
'hsp' => array(
(int) 0 => 'HE0000G25410',
(int) 1 => 'HE0000G07800'
),
'pte' => array(
(int) 0 => 'pte374950',
(int) 1 => 'pte268290',
(int) 2 => 'pte323710',
(int) 3 => 'pte186640',
(int) 4 => 'pte388210',
(int) 5 => 'pte180100',
(int) 6 => 'pte70280'
),
'ota' => array(
(int) 0 => 'OT_08G02830',
(int) 1 => 'OT_08G03880'
),
'ome' => array(
(int) 0 => 'OM_16G01380',
(int) 1 => 'OM_16G02430',
(int) 2 => 'OM_03G03260'
),
'olu' => array(
(int) 0 => 'OL08G02650',
(int) 1 => 'OL08G03830'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G05390',
(int) 1 => 'MRCC299_08G03350'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_01G07160',
(int) 1 => 'BPRRCC1105_01G05990'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.04g01620',
(int) 1 => 'RCC4223.199g00040'
),
'pse3' => array(
(int) 0 => 'PI00G24040'
),
'mpu' => array(
(int) 0 => 'MP05G06760',
(int) 1 => 'MP05G04870'
),
'scp' => array(
(int) 0 => 'SPAPB24D3.10c',
(int) 1 => 'SPAC1039.11c',
(int) 2 => 'SPAC30D11.01c',
(int) 3 => 'SPAC1002.03c'
),
'vca' => array(
(int) 0 => 'VC00G110660'
),
'nga' => array(
(int) 0 => 'Naga_100017g38',
(int) 1 => 'Naga_100114g11'
),
'ccr' => array(
(int) 0 => 'ccr158380'
),
'fcy' => array(
(int) 0 => 'FC002G01800',
(int) 1 => 'FC006G00220'
),
'drm' => array(
(int) 0 => 'FBgn0027588',
(int) 1 => 'FBgn0261575'
),
'tps' => array(
(int) 0 => 'TP07G02080'
),
'cre' => array(
(int) 0 => 'CR03G10710',
(int) 1 => 'CR03G11570'
),
'gsu' => array(
(int) 0 => 'gsu126010',
(int) 1 => 'gsu139510',
(int) 2 => 'gsu133460',
(int) 3 => 'gsu63580'
),
'sac' => array(
(int) 0 => 'YBR229C'
),
'cme' => array(
(int) 0 => 'CM13G00820',
(int) 1 => 'CM06G01210'
),
'ptri' => array(
(int) 0 => 'PTI_05G01610'
),
'emh' => array(
(int) 0 => 'emh160400',
(int) 1 => 'emh626580',
(int) 2 => 'emh472720',
(int) 3 => 'emh552990',
(int) 4 => 'emh746930',
(int) 5 => 'emh564800',
(int) 6 => 'emh123040',
(int) 7 => 'emh362880'
),
'aan' => array(
(int) 0 => 'AA0001G01930'
),
'esi' => array(
(int) 0 => 'ES0080G00420'
),
'orcc809' => array(
(int) 0 => 'ORCC809_08G02600',
(int) 1 => 'ORCC809_04G02780',
(int) 2 => 'ORCC809_12G00530'
)
)
$gene_id = 'ENSMUSG00000027790'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000027790'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'CNC64A_011G02000'
$gf_placeholder = 'HOM03P008161'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_529G00010',
'e_value' => '1e-11',
'bit_score' => '69.3',
'alignment_length' => '85',
'identity_percentage' => '37.65',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P106179'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_529G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000027790' => array(
'gene_id' => 'ENSMUSG00000027790',
'e_value' => '0.0',
'bit_score' => '3805',
'alignment_length' => '1819',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000090402' => array(
'gene_id' => 'ENSG00000090402',
'e_value' => '0.0',
'bit_score' => '3035',
'alignment_length' => '1829',
'identity_percentage' => '77.75',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000257335' => array(
'gene_id' => 'ENSG00000257335',
'e_value' => '0.0',
'bit_score' => '2266',
'alignment_length' => '1861',
'identity_percentage' => '57.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000068587' => array(
'gene_id' => 'ENSMUSG00000068587',
'e_value' => '0.0',
'bit_score' => '2265',
'alignment_length' => '1766',
'identity_percentage' => '60.25',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000278563' => array(
'gene_id' => 'ENSG00000278563',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000257743' => array(
'gene_id' => 'ENSG00000257743',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00017071' => array(
'gene_id' => 'WBGene00017071',
'e_value' => '6e-174',
'bit_score' => '559',
'alignment_length' => '861',
'identity_percentage' => '38.79',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0269790' => array(
'gene_id' => 'DDB_G0269790',
'e_value' => '4e-168',
'bit_score' => '541',
'alignment_length' => '863',
'identity_percentage' => '38.59',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'PP00264G00160' => array(
'gene_id' => 'PP00264G00160',
'e_value' => '1e-166',
'bit_score' => '538',
'alignment_length' => '902',
'identity_percentage' => '35.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00013G02430' => array(
'gene_id' => 'PP00013G02430',
'e_value' => '4e-166',
'bit_score' => '537',
'alignment_length' => '866',
'identity_percentage' => '36.03',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00019895' => array(
'gene_id' => 'WBGene00019895',
'e_value' => '8e-165',
'bit_score' => '535',
'alignment_length' => '889',
'identity_percentage' => '38.36',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'PP00119G00640' => array(
'gene_id' => 'PP00119G00640',
'e_value' => '4e-163',
'bit_score' => '529',
'alignment_length' => '871',
'identity_percentage' => '35.71',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00086G00660' => array(
'gene_id' => 'PP00086G00660',
'e_value' => '2e-161',
'bit_score' => '523',
'alignment_length' => '852',
'identity_percentage' => '36.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00011G01860' => array(
'gene_id' => 'PP00011G01860',
'e_value' => '3e-159',
'bit_score' => '518',
'alignment_length' => '881',
'identity_percentage' => '35.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'phs293220' => array(
'gene_id' => 'phs293220',
'e_value' => '4e-159',
'bit_score' => '518',
'alignment_length' => '866',
'identity_percentage' => '35.45',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'PP00025G00520' => array(
'gene_id' => 'PP00025G00520',
'e_value' => '1e-158',
'bit_score' => '517',
'alignment_length' => '897',
'identity_percentage' => '34.89',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS06G46340' => array(
'gene_id' => 'OS06G46340',
'e_value' => '7e-158',
'bit_score' => '514',
'alignment_length' => '801',
'identity_percentage' => '37.83',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT5G11720' => array(
'gene_id' => 'AT5G11720',
'e_value' => '4e-157',
'bit_score' => '512',
'alignment_length' => '773',
'identity_percentage' => '38.42',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS06G46284' => array(
'gene_id' => 'OS06G46284',
'e_value' => '7e-157',
'bit_score' => '511',
'alignment_length' => '876',
'identity_percentage' => '35.96',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'phs293240' => array(
'gene_id' => 'phs293240',
'e_value' => '2e-155',
'bit_score' => '513',
'alignment_length' => '867',
'identity_percentage' => '34.95',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'PP00043G00100' => array(
'gene_id' => 'PP00043G00100',
'e_value' => '3e-150',
'bit_score' => '493',
'alignment_length' => '874',
'identity_percentage' => '35.13',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00080G01120' => array(
'gene_id' => 'PP00080G01120',
'e_value' => '3e-150',
'bit_score' => '494',
'alignment_length' => '901',
'identity_percentage' => '34.18',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00092G00960' => array(
'gene_id' => 'ATR_00092G00960',
'e_value' => '3e-146',
'bit_score' => '480',
'alignment_length' => '747',
'identity_percentage' => '37.75',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS01G03950' => array(
'gene_id' => 'OS01G03950',
'e_value' => '9e-145',
'bit_score' => '479',
'alignment_length' => '928',
'identity_percentage' => '34.59',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT3G45940' => array(
'gene_id' => 'AT3G45940',
'e_value' => '2e-144',
'bit_score' => '476',
'alignment_length' => '819',
'identity_percentage' => '37.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00006G00120' => array(
'gene_id' => 'PP00006G00120',
'e_value' => '3e-144',
'bit_score' => '477',
'alignment_length' => '919',
'identity_percentage' => '33.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G68560' => array(
'gene_id' => 'AT1G68560',
'e_value' => '1e-143',
'bit_score' => '475',
'alignment_length' => '891',
'identity_percentage' => '34.23',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00245G00510' => array(
'gene_id' => 'PP00245G00510',
'e_value' => '5e-142',
'bit_score' => '470',
'alignment_length' => '874',
'identity_percentage' => '34.44',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00157G00350' => array(
'gene_id' => 'PP00157G00350',
'e_value' => '6e-142',
'bit_score' => '471',
'alignment_length' => '903',
'identity_percentage' => '32.56',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00264G00120' => array(
'gene_id' => 'PP00264G00120',
'e_value' => '2e-140',
'bit_score' => '468',
'alignment_length' => '876',
'identity_percentage' => '33.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00110' => array(
'gene_id' => 'ATR_00079G00110',
'e_value' => '1e-136',
'bit_score' => '451',
'alignment_length' => '714',
'identity_percentage' => '37.68',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AC00G97780' => array(
'gene_id' => 'AC00G97780',
'e_value' => '2e-123',
'bit_score' => '416',
'alignment_length' => '731',
'identity_percentage' => '35.57',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G66180' => array(
'gene_id' => 'CV00G66180',
'e_value' => '4e-123',
'bit_score' => '417',
'alignment_length' => '732',
'identity_percentage' => '36.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G33310' => array(
'gene_id' => 'CV00G33310',
'e_value' => '6e-121',
'bit_score' => '412',
'alignment_length' => '970',
'identity_percentage' => '30.41',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G87890' => array(
'gene_id' => 'CV00G87890',
'e_value' => '5e-119',
'bit_score' => '402',
'alignment_length' => '779',
'identity_percentage' => '34.66',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AP00G35250' => array(
'gene_id' => 'AP00G35250',
'e_value' => '3e-116',
'bit_score' => '401',
'alignment_length' => '787',
'identity_percentage' => '33.04',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_008G02740' => array(
'gene_id' => 'CNC64A_008G02740',
'e_value' => '1e-112',
'bit_score' => '396',
'alignment_length' => '850',
'identity_percentage' => '33.18',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00080' => array(
'gene_id' => 'ATR_00079G00080',
'e_value' => '3e-106',
'bit_score' => '360',
'alignment_length' => '585',
'identity_percentage' => '37.95',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G25410' => array(
'gene_id' => 'HE0000G25410',
'e_value' => '2e-103',
'bit_score' => '353',
'alignment_length' => '675',
'identity_percentage' => '32.59',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'CV00G66200' => array(
'gene_id' => 'CV00G66200',
'e_value' => '5e-103',
'bit_score' => '352',
'alignment_length' => '678',
'identity_percentage' => '34.22',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'pte374950' => array(
'gene_id' => 'pte374950',
'e_value' => '2e-100',
'bit_score' => '348',
'alignment_length' => '829',
'identity_percentage' => '30.40',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AC00G02390' => array(
'gene_id' => 'AC00G02390',
'e_value' => '2e-99',
'bit_score' => '340',
'alignment_length' => '593',
'identity_percentage' => '34.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'pte268290' => array(
'gene_id' => 'pte268290',
'e_value' => '2e-99',
'bit_score' => '346',
'alignment_length' => '796',
'identity_percentage' => '31.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte323710' => array(
'gene_id' => 'pte323710',
'e_value' => '7e-99',
'bit_score' => '344',
'alignment_length' => '853',
'identity_percentage' => '28.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte186640' => array(
'gene_id' => 'pte186640',
'e_value' => '7e-98',
'bit_score' => '342',
'alignment_length' => '792',
'identity_percentage' => '30.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte388210' => array(
'gene_id' => 'pte388210',
'e_value' => '3e-97',
'bit_score' => '340',
'alignment_length' => '843',
'identity_percentage' => '28.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000214013' => array(
'gene_id' => 'ENSG00000214013',
'e_value' => '3e-87',
'bit_score' => '313',
'alignment_length' => '700',
'identity_percentage' => '31.14',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'OT_08G02830' => array(
'gene_id' => 'OT_08G02830',
'e_value' => '8e-86',
'bit_score' => '309',
'alignment_length' => '587',
'identity_percentage' => '33.05',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000062646' => array(
'gene_id' => 'ENSMUSG00000062646',
'e_value' => '1e-85',
'bit_score' => '308',
'alignment_length' => '810',
'identity_percentage' => '30.12',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'OM_16G01380' => array(
'gene_id' => 'OM_16G01380',
'e_value' => '8e-85',
'bit_score' => '306',
'alignment_length' => '549',
'identity_percentage' => '33.15',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'OL08G02650' => array(
'gene_id' => 'OL08G02650',
'e_value' => '2e-84',
'bit_score' => '301',
'alignment_length' => '579',
'identity_percentage' => '31.95',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G77390' => array(
'gene_id' => 'AC00G77390',
'e_value' => '6e-80',
'bit_score' => '290',
'alignment_length' => '616',
'identity_percentage' => '31.49',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OS07G23880' => array(
'gene_id' => 'OS07G23880',
'e_value' => '9e-80',
'bit_score' => '292',
'alignment_length' => '598',
'identity_percentage' => '33.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G05390' => array(
'gene_id' => 'MRCC299_08G05390',
'e_value' => '1e-78',
'bit_score' => '287',
'alignment_length' => '542',
'identity_percentage' => '32.47',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'AT3G23640' => array(
'gene_id' => 'AT3G23640',
'e_value' => '1e-78',
'bit_score' => '288',
'alignment_length' => '556',
'identity_percentage' => '34.71',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'phs92320' => array(
'gene_id' => 'phs92320',
'e_value' => '5e-78',
'bit_score' => '288',
'alignment_length' => '502',
'identity_percentage' => '36.06',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00018682' => array(
'gene_id' => 'WBGene00018682',
'e_value' => '5e-78',
'bit_score' => '285',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'PP00281G00070' => array(
'gene_id' => 'PP00281G00070',
'e_value' => '7e-78',
'bit_score' => '274',
'alignment_length' => '498',
'identity_percentage' => '34.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_019G00790' => array(
'gene_id' => 'CNC64A_019G00790',
'e_value' => '2e-77',
'bit_score' => '267',
'alignment_length' => '359',
'identity_percentage' => '40.11',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00065G01570' => array(
'gene_id' => 'ATR_00065G01570',
'e_value' => '1e-76',
'bit_score' => '280',
'alignment_length' => '634',
'identity_percentage' => '31.23',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00005G01250' => array(
'gene_id' => 'PP00005G01250',
'e_value' => '5e-76',
'bit_score' => '281',
'alignment_length' => '571',
'identity_percentage' => '33.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte180100' => array(
'gene_id' => 'pte180100',
'e_value' => '9e-76',
'bit_score' => '278',
'alignment_length' => '679',
'identity_percentage' => '29.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS03G11720' => array(
'gene_id' => 'OS03G11720',
'e_value' => '2e-75',
'bit_score' => '276',
'alignment_length' => '657',
'identity_percentage' => '30.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'pte70280' => array(
'gene_id' => 'pte70280',
'e_value' => '4e-75',
'bit_score' => '275',
'alignment_length' => '733',
'identity_percentage' => '28.24',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AT5G63840' => array(
'gene_id' => 'AT5G63840',
'e_value' => '2e-74',
'bit_score' => '274',
'alignment_length' => '650',
'identity_percentage' => '31.38',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G24690' => array(
'gene_id' => 'CV00G24690',
'e_value' => '3e-74',
'bit_score' => '273',
'alignment_length' => '640',
'identity_percentage' => '31.25',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000071650' => array(
'gene_id' => 'ENSMUSG00000071650',
'e_value' => '3e-74',
'bit_score' => '274',
'alignment_length' => '617',
'identity_percentage' => '31.28',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_01G07160' => array(
'gene_id' => 'BPRRCC1105_01G07160',
'e_value' => '4e-74',
'bit_score' => '274',
'alignment_length' => '521',
'identity_percentage' => '31.86',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'PP00041G01080' => array(
'gene_id' => 'PP00041G01080',
'e_value' => '4e-74',
'bit_score' => '275',
'alignment_length' => '572',
'identity_percentage' => '33.22',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01620' => array(
'gene_id' => 'RCC4223.04g01620',
'e_value' => '5e-74',
'bit_score' => '273',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G24040' => array(
'gene_id' => 'PI00G24040',
'e_value' => '2e-73',
'bit_score' => '271',
'alignment_length' => '640',
'identity_percentage' => '30.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00048G01310' => array(
'gene_id' => 'ATR_00048G01310',
'e_value' => '4e-73',
'bit_score' => '271',
'alignment_length' => '684',
'identity_percentage' => '31.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS07G23944' => array(
'gene_id' => 'OS07G23944',
'e_value' => '4e-73',
'bit_score' => '270',
'alignment_length' => '675',
'identity_percentage' => '31.70',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'MP05G06760' => array(
'gene_id' => 'MP05G06760',
'e_value' => '7e-73',
'bit_score' => '270',
'alignment_length' => '549',
'identity_percentage' => '32.06',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'SPAPB24D3.10c' => array(
'gene_id' => 'SPAPB24D3.10c',
'e_value' => '1e-72',
'bit_score' => '269',
'alignment_length' => '358',
'identity_percentage' => '41.62',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0269154' => array(
'gene_id' => 'DDB_G0269154',
'e_value' => '1e-72',
'bit_score' => '268',
'alignment_length' => '691',
'identity_percentage' => '29.96',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'PP00140G00390' => array(
'gene_id' => 'PP00140G00390',
'e_value' => '2e-72',
'bit_score' => '269',
'alignment_length' => '558',
'identity_percentage' => '33.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00242G00250' => array(
'gene_id' => 'PP00242G00250',
'e_value' => '3e-72',
'bit_score' => '268',
'alignment_length' => '592',
'identity_percentage' => '31.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G110660' => array(
'gene_id' => 'VC00G110660',
'e_value' => '1e-71',
'bit_score' => '265',
'alignment_length' => '635',
'identity_percentage' => '30.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'PP00109G00830' => array(
'gene_id' => 'PP00109G00830',
'e_value' => '2e-70',
'bit_score' => '262',
'alignment_length' => '556',
'identity_percentage' => '32.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CV00G74030' => array(
'gene_id' => 'CV00G74030',
'e_value' => '3e-70',
'bit_score' => '262',
'alignment_length' => '487',
'identity_percentage' => '34.91',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1039.11c' => array(
'gene_id' => 'SPAC1039.11c',
'e_value' => '5e-70',
'bit_score' => '261',
'alignment_length' => '345',
'identity_percentage' => '40.29',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100017g38' => array(
'gene_id' => 'Naga_100017g38',
'e_value' => '1e-69',
'bit_score' => '260',
'alignment_length' => '718',
'identity_percentage' => '29.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'phs303660' => array(
'gene_id' => 'phs303660',
'e_value' => '2e-69',
'bit_score' => '259',
'alignment_length' => '529',
'identity_percentage' => '31.19',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'SPAC30D11.01c' => array(
'gene_id' => 'SPAC30D11.01c',
'e_value' => '5e-69',
'bit_score' => '258',
'alignment_length' => '420',
'identity_percentage' => '37.86',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'PP00060G00720' => array(
'gene_id' => 'PP00060G00720',
'e_value' => '1e-68',
'bit_score' => '256',
'alignment_length' => '556',
'identity_percentage' => '33.09',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ccr158380' => array(
'gene_id' => 'ccr158380',
'e_value' => '9e-68',
'bit_score' => '254',
'alignment_length' => '654',
'identity_percentage' => '31.04',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'phs71090' => array(
'gene_id' => 'phs71090',
'e_value' => '2e-67',
'bit_score' => '241',
'alignment_length' => '408',
'identity_percentage' => '33.82',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'FC002G01800' => array(
'gene_id' => 'FC002G01800',
'e_value' => '1e-66',
'bit_score' => '248',
'alignment_length' => '667',
'identity_percentage' => '28.79',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0027588' => array(
'gene_id' => 'FBgn0027588',
'e_value' => '4e-66',
'bit_score' => '248',
'alignment_length' => '608',
'identity_percentage' => '31.25',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'TP07G02080' => array(
'gene_id' => 'TP07G02080',
'e_value' => '5e-66',
'bit_score' => '247',
'alignment_length' => '683',
'identity_percentage' => '28.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'CR03G10710' => array(
'gene_id' => 'CR03G10710',
'e_value' => '8e-66',
'bit_score' => '247',
'alignment_length' => '641',
'identity_percentage' => '29.95',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1002.03c' => array(
'gene_id' => 'SPAC1002.03c',
'e_value' => '3e-65',
'bit_score' => '246',
'alignment_length' => '560',
'identity_percentage' => '31.25',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'gsu126010' => array(
'gene_id' => 'gsu126010',
'e_value' => '1e-64',
'bit_score' => '244',
'alignment_length' => '595',
'identity_percentage' => '29.92',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00009583' => array(
'gene_id' => 'WBGene00009583',
'e_value' => '2e-61',
'bit_score' => '233',
'alignment_length' => '652',
'identity_percentage' => '26.53',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G07800' => array(
'gene_id' => 'HE0000G07800',
'e_value' => '8e-61',
'bit_score' => '230',
'alignment_length' => '528',
'identity_percentage' => '31.06',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'YBR229C' => array(
'gene_id' => 'YBR229C',
'e_value' => '3e-57',
'bit_score' => '220',
'alignment_length' => '602',
'identity_percentage' => '28.74',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'CM13G00820' => array(
'gene_id' => 'CM13G00820',
'e_value' => '9e-57',
'bit_score' => '219',
'alignment_length' => '592',
'identity_percentage' => '29.22',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'PTI_05G01610' => array(
'gene_id' => 'PTI_05G01610',
'e_value' => '2e-56',
'bit_score' => '218',
'alignment_length' => '700',
'identity_percentage' => '28.14',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'emh160400' => array(
'gene_id' => 'emh160400',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh626580' => array(
'gene_id' => 'emh626580',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AA0001G01930' => array(
'gene_id' => 'AA0001G01930',
'e_value' => '4e-53',
'bit_score' => '210',
'alignment_length' => '630',
'identity_percentage' => '29.21',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'phs71110' => array(
'gene_id' => 'phs71110',
'e_value' => '3e-50',
'bit_score' => '199',
'alignment_length' => '397',
'identity_percentage' => '34.51',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'CR03G11570' => array(
'gene_id' => 'CR03G11570',
'e_value' => '2e-49',
'bit_score' => '197',
'alignment_length' => '523',
'identity_percentage' => '29.45',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'AP00G19080' => array(
'gene_id' => 'AP00G19080',
'e_value' => '1e-48',
'bit_score' => '194',
'alignment_length' => '424',
'identity_percentage' => '31.84',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'ES0080G00420' => array(
'gene_id' => 'ES0080G00420',
'e_value' => '1e-46',
'bit_score' => '182',
'alignment_length' => '588',
'identity_percentage' => '26.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_034G00560' => array(
'gene_id' => 'CNC64A_034G00560',
'e_value' => '2e-46',
'bit_score' => '183',
'alignment_length' => '601',
'identity_percentage' => '27.79',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'PP00065G00350' => array(
'gene_id' => 'PP00065G00350',
'e_value' => '2e-43',
'bit_score' => '170',
'alignment_length' => '302',
'identity_percentage' => '32.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'emh472720' => array(
'gene_id' => 'emh472720',
'e_value' => '4e-38',
'bit_score' => '160',
'alignment_length' => '590',
'identity_percentage' => '27.46',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_08G02600' => array(
'gene_id' => 'ORCC809_08G02600',
'e_value' => '5e-37',
'bit_score' => '157',
'alignment_length' => '337',
'identity_percentage' => '29.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.199g00040' => array(
'gene_id' => 'RCC4223.199g00040',
'e_value' => '2e-36',
'bit_score' => '154',
'alignment_length' => '550',
'identity_percentage' => '25.27',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'gsu139510' => array(
'gene_id' => 'gsu139510',
'e_value' => '6e-34',
'bit_score' => '146',
'alignment_length' => '616',
'identity_percentage' => '26.30',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_034G00570' => array(
'gene_id' => 'CNC64A_034G00570',
'e_value' => '6e-31',
'bit_score' => '124',
'alignment_length' => '86',
'identity_percentage' => '61.63',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00079G00090' => array(
'gene_id' => 'ATR_00079G00090',
'e_value' => '3e-27',
'bit_score' => '118',
'alignment_length' => '213',
'identity_percentage' => '38.03',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'emh552990' => array(
'gene_id' => 'emh552990',
'e_value' => '7e-21',
'bit_score' => '104',
'alignment_length' => '588',
'identity_percentage' => '23.98',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OT_08G03880' => array(
'gene_id' => 'OT_08G03880',
'e_value' => '8e-15',
'bit_score' => '84.3',
'alignment_length' => '387',
'identity_percentage' => '23.00',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'emh746930' => array(
'gene_id' => 'emh746930',
'e_value' => '3e-14',
'bit_score' => '82.8',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh564800' => array(
'gene_id' => 'emh564800',
'e_value' => '4e-14',
'bit_score' => '82.0',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'gsu133460' => array(
'gene_id' => 'gsu133460',
'e_value' => '2e-13',
'bit_score' => '77.4',
'alignment_length' => '206',
'identity_percentage' => '30.10',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'MP05G04870' => array(
'gene_id' => 'MP05G04870',
'e_value' => '1e-12',
'bit_score' => '77.0',
'alignment_length' => '580',
'identity_percentage' => '22.59',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00095G00110' => array(
'gene_id' => 'ATR_00095G00110',
'e_value' => '2e-12',
'bit_score' => '77.0',
'alignment_length' => '596',
'identity_percentage' => '21.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CM06G01210' => array(
'gene_id' => 'CM06G01210',
'e_value' => '3e-12',
'bit_score' => '76.3',
'alignment_length' => '495',
'identity_percentage' => '21.62',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100114g11' => array(
'gene_id' => 'Naga_100114g11',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '210',
'identity_percentage' => '30.95',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OM_16G02430' => array(
'gene_id' => 'OM_16G02430',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '388',
'identity_percentage' => '22.68',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G03350' => array(
'gene_id' => 'MRCC299_08G03350',
'e_value' => '7e-12',
'bit_score' => '74.7',
'alignment_length' => '590',
'identity_percentage' => '21.86',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OL08G03830' => array(
'gene_id' => 'OL08G03830',
'e_value' => '7e-12',
'bit_score' => '74.3',
'alignment_length' => '506',
'identity_percentage' => '23.12',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_529G00010' => array(
'gene_id' => 'CNC64A_529G00010',
'e_value' => '1e-11',
'bit_score' => '69.3',
'alignment_length' => '85',
'identity_percentage' => '37.65',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_025G00750' => array(
'gene_id' => 'CNC64A_025G00750',
'e_value' => '2e-11',
'bit_score' => '72.4',
'alignment_length' => '171',
'identity_percentage' => '28.07',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'PP00041G01100' => array(
'gene_id' => 'PP00041G01100',
'e_value' => '8e-11',
'bit_score' => '71.2',
'alignment_length' => '600',
'identity_percentage' => '21.83',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'gsu63580' => array(
'gene_id' => 'gsu63580',
'e_value' => '2e-10',
'bit_score' => '70.5',
'alignment_length' => '300',
'identity_percentage' => '23.67',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_01G05990' => array(
'gene_id' => 'BPRRCC1105_01G05990',
'e_value' => '1e-09',
'bit_score' => '67.8',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'emh123040' => array(
'gene_id' => 'emh123040',
'e_value' => '4e-08',
'bit_score' => '62.8',
'alignment_length' => '180',
'identity_percentage' => '27.22',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OM_03G03260' => array(
'gene_id' => 'OM_03G03260',
'e_value' => '5e-08',
'bit_score' => '62.0',
'alignment_length' => '197',
'identity_percentage' => '28.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0261575' => array(
'gene_id' => 'FBgn0261575',
'e_value' => '7e-08',
'bit_score' => '61.6',
'alignment_length' => '197',
'identity_percentage' => '26.90',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'emh362880' => array(
'gene_id' => 'emh362880',
'e_value' => '9e-08',
'bit_score' => '61.6',
'alignment_length' => '156',
'identity_percentage' => '28.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'FC006G00220' => array(
'gene_id' => 'FC006G00220',
'e_value' => '5e-07',
'bit_score' => '58.9',
'alignment_length' => '308',
'identity_percentage' => '22.73',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G02780' => array(
'gene_id' => 'ORCC809_04G02780',
'e_value' => '9e-07',
'bit_score' => '57.4',
'alignment_length' => '212',
'identity_percentage' => '26.42',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_12G00530' => array(
'gene_id' => 'ORCC809_12G00530',
'e_value' => '9e-07',
'bit_score' => '58.2',
'alignment_length' => '364',
'identity_percentage' => '24.18',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000027790',
(int) 1 => 'ENSMUSG00000068587',
(int) 2 => 'ENSMUSG00000062646',
(int) 3 => 'ENSMUSG00000071650'
),
'hom' => array(
(int) 0 => 'ENSG00000090402',
(int) 1 => 'ENSG00000257335',
(int) 2 => 'ENSG00000278563',
(int) 3 => 'ENSG00000257743',
(int) 4 => 'ENSG00000214013'
),
'cel' => array(
(int) 0 => 'WBGene00017071',
(int) 1 => 'WBGene00019895',
(int) 2 => 'WBGene00018682',
(int) 3 => 'WBGene00009583'
),
'ddi' => array(
(int) 0 => 'DDB_G0269790',
(int) 1 => 'DDB_G0269154'
),
'ppa' => array(
(int) 0 => 'PP00264G00160',
(int) 1 => 'PP00013G02430',
(int) 2 => 'PP00119G00640',
(int) 3 => 'PP00086G00660',
(int) 4 => 'PP00011G01860',
(int) 5 => 'PP00025G00520',
(int) 6 => 'PP00043G00100',
(int) 7 => 'PP00080G01120',
(int) 8 => 'PP00006G00120',
(int) 9 => 'PP00245G00510',
(int) 10 => 'PP00157G00350',
(int) 11 => 'PP00264G00120',
(int) 12 => 'PP00281G00070',
(int) 13 => 'PP00005G01250',
(int) 14 => 'PP00041G01080',
(int) 15 => 'PP00140G00390',
(int) 16 => 'PP00242G00250',
(int) 17 => 'PP00109G00830',
(int) 18 => 'PP00060G00720',
(int) 19 => 'PP00065G00350',
(int) 20 => 'PP00041G01100'
),
'phs' => array(
(int) 0 => 'phs293220',
(int) 1 => 'phs293240',
(int) 2 => 'phs92320',
(int) 3 => 'phs303660',
(int) 4 => 'phs71090',
(int) 5 => 'phs71110'
),
'osa' => array(
(int) 0 => 'OS06G46340',
(int) 1 => 'OS06G46284',
(int) 2 => 'OS01G03950',
(int) 3 => 'OS07G23880',
(int) 4 => 'OS03G11720',
(int) 5 => 'OS07G23944'
),
'ath' => array(
(int) 0 => 'AT5G11720',
(int) 1 => 'AT3G45940',
(int) 2 => 'AT1G68560',
(int) 3 => 'AT3G23640',
(int) 4 => 'AT5G63840'
),
'atr' => array(
(int) 0 => 'ATR_00092G00960',
(int) 1 => 'ATR_00079G00110',
(int) 2 => 'ATR_00079G00080',
(int) 3 => 'ATR_00065G01570',
(int) 4 => 'ATR_00048G01310',
(int) 5 => 'ATR_00079G00090',
(int) 6 => 'ATR_00095G00110'
),
'acg' => array(
(int) 0 => 'AC00G97780',
(int) 1 => 'AC00G02390',
(int) 2 => 'AC00G77390'
),
'cvu' => array(
(int) 0 => 'CV00G66180',
(int) 1 => 'CV00G33310',
(int) 2 => 'CV00G87890',
(int) 3 => 'CV00G66200',
(int) 4 => 'CV00G24690',
(int) 5 => 'CV00G74030'
),
'apr' => array(
(int) 0 => 'AP00G35250',
(int) 1 => 'AP00G19080'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_008G02740',
(int) 1 => 'CNC64A_019G00790',
(int) 2 => 'CNC64A_034G00560',
(int) 3 => 'CNC64A_034G00570',
(int) 4 => 'CNC64A_025G00750'
),
'hsp' => array(
(int) 0 => 'HE0000G25410',
(int) 1 => 'HE0000G07800'
),
'pte' => array(
(int) 0 => 'pte374950',
(int) 1 => 'pte268290',
(int) 2 => 'pte323710',
(int) 3 => 'pte186640',
(int) 4 => 'pte388210',
(int) 5 => 'pte180100',
(int) 6 => 'pte70280'
),
'ota' => array(
(int) 0 => 'OT_08G02830',
(int) 1 => 'OT_08G03880'
),
'ome' => array(
(int) 0 => 'OM_16G01380',
(int) 1 => 'OM_16G02430',
(int) 2 => 'OM_03G03260'
),
'olu' => array(
(int) 0 => 'OL08G02650',
(int) 1 => 'OL08G03830'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G05390',
(int) 1 => 'MRCC299_08G03350'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_01G07160',
(int) 1 => 'BPRRCC1105_01G05990'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.04g01620',
(int) 1 => 'RCC4223.199g00040'
),
'pse3' => array(
(int) 0 => 'PI00G24040'
),
'mpu' => array(
(int) 0 => 'MP05G06760',
(int) 1 => 'MP05G04870'
),
'scp' => array(
(int) 0 => 'SPAPB24D3.10c',
(int) 1 => 'SPAC1039.11c',
(int) 2 => 'SPAC30D11.01c',
(int) 3 => 'SPAC1002.03c'
),
'vca' => array(
(int) 0 => 'VC00G110660'
),
'nga' => array(
(int) 0 => 'Naga_100017g38',
(int) 1 => 'Naga_100114g11'
),
'ccr' => array(
(int) 0 => 'ccr158380'
),
'fcy' => array(
(int) 0 => 'FC002G01800',
(int) 1 => 'FC006G00220'
),
'drm' => array(
(int) 0 => 'FBgn0027588',
(int) 1 => 'FBgn0261575'
),
'tps' => array(
(int) 0 => 'TP07G02080'
),
'cre' => array(
(int) 0 => 'CR03G10710',
(int) 1 => 'CR03G11570'
),
'gsu' => array(
(int) 0 => 'gsu126010',
(int) 1 => 'gsu139510',
(int) 2 => 'gsu133460',
(int) 3 => 'gsu63580'
),
'sac' => array(
(int) 0 => 'YBR229C'
),
'cme' => array(
(int) 0 => 'CM13G00820',
(int) 1 => 'CM06G01210'
),
'ptri' => array(
(int) 0 => 'PTI_05G01610'
),
'emh' => array(
(int) 0 => 'emh160400',
(int) 1 => 'emh626580',
(int) 2 => 'emh472720',
(int) 3 => 'emh552990',
(int) 4 => 'emh746930',
(int) 5 => 'emh564800',
(int) 6 => 'emh123040',
(int) 7 => 'emh362880'
),
'aan' => array(
(int) 0 => 'AA0001G01930'
),
'esi' => array(
(int) 0 => 'ES0080G00420'
),
'orcc809' => array(
(int) 0 => 'ORCC809_08G02600',
(int) 1 => 'ORCC809_04G02780',
(int) 2 => 'ORCC809_12G00530'
)
),
'gene_id' => 'ENSMUSG00000027790',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000027790',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'CNC64A_011G02000',
'gf_placeholder' => 'HOM03P008161',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000027790' => array(
'gene_id' => 'ENSMUSG00000027790',
'e_value' => '0.0',
'bit_score' => '3805',
'alignment_length' => '1819',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000090402' => array(
'gene_id' => 'ENSG00000090402',
'e_value' => '0.0',
'bit_score' => '3035',
'alignment_length' => '1829',
'identity_percentage' => '77.75',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000257335' => array(
'gene_id' => 'ENSG00000257335',
'e_value' => '0.0',
'bit_score' => '2266',
'alignment_length' => '1861',
'identity_percentage' => '57.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSMUSG00000068587' => array(
'gene_id' => 'ENSMUSG00000068587',
'e_value' => '0.0',
'bit_score' => '2265',
'alignment_length' => '1766',
'identity_percentage' => '60.25',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000278563' => array(
'gene_id' => 'ENSG00000278563',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000257743' => array(
'gene_id' => 'ENSG00000257743',
'e_value' => '0.0',
'bit_score' => '2110',
'alignment_length' => '1831',
'identity_percentage' => '55.76',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'WBGene00017071' => array(
'gene_id' => 'WBGene00017071',
'e_value' => '6e-174',
'bit_score' => '559',
'alignment_length' => '861',
'identity_percentage' => '38.79',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'DDB_G0269790' => array(
'gene_id' => 'DDB_G0269790',
'e_value' => '4e-168',
'bit_score' => '541',
'alignment_length' => '863',
'identity_percentage' => '38.59',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00264G00160' => array(
'gene_id' => 'PP00264G00160',
'e_value' => '1e-166',
'bit_score' => '538',
'alignment_length' => '902',
'identity_percentage' => '35.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00013G02430' => array(
'gene_id' => 'PP00013G02430',
'e_value' => '4e-166',
'bit_score' => '537',
'alignment_length' => '866',
'identity_percentage' => '36.03',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'WBGene00019895' => array(
'gene_id' => 'WBGene00019895',
'e_value' => '8e-165',
'bit_score' => '535',
'alignment_length' => '889',
'identity_percentage' => '38.36',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00119G00640' => array(
'gene_id' => 'PP00119G00640',
'e_value' => '4e-163',
'bit_score' => '529',
'alignment_length' => '871',
'identity_percentage' => '35.71',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00086G00660' => array(
'gene_id' => 'PP00086G00660',
'e_value' => '2e-161',
'bit_score' => '523',
'alignment_length' => '852',
'identity_percentage' => '36.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00011G01860' => array(
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'alignment_length' => '881',
'identity_percentage' => '35.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'phs293220' => array(
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'e_value' => '4e-159',
'bit_score' => '518',
'alignment_length' => '866',
'identity_percentage' => '35.45',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00025G00520' => array(
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'bit_score' => '517',
'alignment_length' => '897',
'identity_percentage' => '34.89',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'OS06G46340' => array(
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'e_value' => '7e-158',
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'alignment_length' => '801',
'identity_percentage' => '37.83',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AT5G11720' => array(
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'bit_score' => '512',
'alignment_length' => '773',
'identity_percentage' => '38.42',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'OS06G46284' => array(
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'e_value' => '7e-157',
'bit_score' => '511',
'alignment_length' => '876',
'identity_percentage' => '35.96',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'phs293240' => array(
'gene_id' => 'phs293240',
'e_value' => '2e-155',
'bit_score' => '513',
'alignment_length' => '867',
'identity_percentage' => '34.95',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00043G00100' => array(
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'e_value' => '3e-150',
'bit_score' => '493',
'alignment_length' => '874',
'identity_percentage' => '35.13',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00080G01120' => array(
'gene_id' => 'PP00080G01120',
'e_value' => '3e-150',
'bit_score' => '494',
'alignment_length' => '901',
'identity_percentage' => '34.18',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ATR_00092G00960' => array(
'gene_id' => 'ATR_00092G00960',
'e_value' => '3e-146',
'bit_score' => '480',
'alignment_length' => '747',
'identity_percentage' => '37.75',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'OS01G03950' => array(
'gene_id' => 'OS01G03950',
'e_value' => '9e-145',
'bit_score' => '479',
'alignment_length' => '928',
'identity_percentage' => '34.59',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AT3G45940' => array(
'gene_id' => 'AT3G45940',
'e_value' => '2e-144',
'bit_score' => '476',
'alignment_length' => '819',
'identity_percentage' => '37.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00006G00120' => array(
'gene_id' => 'PP00006G00120',
'e_value' => '3e-144',
'bit_score' => '477',
'alignment_length' => '919',
'identity_percentage' => '33.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AT1G68560' => array(
'gene_id' => 'AT1G68560',
'e_value' => '1e-143',
'bit_score' => '475',
'alignment_length' => '891',
'identity_percentage' => '34.23',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00245G00510' => array(
'gene_id' => 'PP00245G00510',
'e_value' => '5e-142',
'bit_score' => '470',
'alignment_length' => '874',
'identity_percentage' => '34.44',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00157G00350' => array(
'gene_id' => 'PP00157G00350',
'e_value' => '6e-142',
'bit_score' => '471',
'alignment_length' => '903',
'identity_percentage' => '32.56',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00264G00120' => array(
'gene_id' => 'PP00264G00120',
'e_value' => '2e-140',
'bit_score' => '468',
'alignment_length' => '876',
'identity_percentage' => '33.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ATR_00079G00110' => array(
'gene_id' => 'ATR_00079G00110',
'e_value' => '1e-136',
'bit_score' => '451',
'alignment_length' => '714',
'identity_percentage' => '37.68',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AC00G97780' => array(
'gene_id' => 'AC00G97780',
'e_value' => '2e-123',
'bit_score' => '416',
'alignment_length' => '731',
'identity_percentage' => '35.57',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G66180' => array(
'gene_id' => 'CV00G66180',
'e_value' => '4e-123',
'bit_score' => '417',
'alignment_length' => '732',
'identity_percentage' => '36.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G33310' => array(
'gene_id' => 'CV00G33310',
'e_value' => '6e-121',
'bit_score' => '412',
'alignment_length' => '970',
'identity_percentage' => '30.41',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G87890' => array(
'gene_id' => 'CV00G87890',
'e_value' => '5e-119',
'bit_score' => '402',
'alignment_length' => '779',
'identity_percentage' => '34.66',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AP00G35250' => array(
'gene_id' => 'AP00G35250',
'e_value' => '3e-116',
'bit_score' => '401',
'alignment_length' => '787',
'identity_percentage' => '33.04',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CNC64A_008G02740' => array(
'gene_id' => 'CNC64A_008G02740',
'e_value' => '1e-112',
'bit_score' => '396',
'alignment_length' => '850',
'identity_percentage' => '33.18',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ATR_00079G00080' => array(
'gene_id' => 'ATR_00079G00080',
'e_value' => '3e-106',
'bit_score' => '360',
'alignment_length' => '585',
'identity_percentage' => '37.95',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'HE0000G25410' => array(
'gene_id' => 'HE0000G25410',
'e_value' => '2e-103',
'bit_score' => '353',
'alignment_length' => '675',
'identity_percentage' => '32.59',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CV00G66200' => array(
'gene_id' => 'CV00G66200',
'e_value' => '5e-103',
'bit_score' => '352',
'alignment_length' => '678',
'identity_percentage' => '34.22',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte374950' => array(
'gene_id' => 'pte374950',
'e_value' => '2e-100',
'bit_score' => '348',
'alignment_length' => '829',
'identity_percentage' => '30.40',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AC00G02390' => array(
'gene_id' => 'AC00G02390',
'e_value' => '2e-99',
'bit_score' => '340',
'alignment_length' => '593',
'identity_percentage' => '34.23',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte268290' => array(
'gene_id' => 'pte268290',
'e_value' => '2e-99',
'bit_score' => '346',
'alignment_length' => '796',
'identity_percentage' => '31.53',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte323710' => array(
'gene_id' => 'pte323710',
'e_value' => '7e-99',
'bit_score' => '344',
'alignment_length' => '853',
'identity_percentage' => '28.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte186640' => array(
'gene_id' => 'pte186640',
'e_value' => '7e-98',
'bit_score' => '342',
'alignment_length' => '792',
'identity_percentage' => '30.43',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'pte388210' => array(
'gene_id' => 'pte388210',
'e_value' => '3e-97',
'bit_score' => '340',
'alignment_length' => '843',
'identity_percentage' => '28.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'ENSG00000214013' => array(
'gene_id' => 'ENSG00000214013',
'e_value' => '3e-87',
'bit_score' => '313',
'alignment_length' => '700',
'identity_percentage' => '31.14',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OT_08G02830' => array(
'gene_id' => 'OT_08G02830',
'e_value' => '8e-86',
'bit_score' => '309',
'alignment_length' => '587',
'identity_percentage' => '33.05',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ENSMUSG00000062646' => array(
'gene_id' => 'ENSMUSG00000062646',
'e_value' => '1e-85',
'bit_score' => '308',
'alignment_length' => '810',
'identity_percentage' => '30.12',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OM_16G01380' => array(
'gene_id' => 'OM_16G01380',
'e_value' => '8e-85',
'bit_score' => '306',
'alignment_length' => '549',
'identity_percentage' => '33.15',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OL08G02650' => array(
'gene_id' => 'OL08G02650',
'e_value' => '2e-84',
'bit_score' => '301',
'alignment_length' => '579',
'identity_percentage' => '31.95',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'AC00G77390' => array(
'gene_id' => 'AC00G77390',
'e_value' => '6e-80',
'bit_score' => '290',
'alignment_length' => '616',
'identity_percentage' => '31.49',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'OS07G23880' => array(
'gene_id' => 'OS07G23880',
'e_value' => '9e-80',
'bit_score' => '292',
'alignment_length' => '598',
'identity_percentage' => '33.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'MRCC299_08G05390' => array(
'gene_id' => 'MRCC299_08G05390',
'e_value' => '1e-78',
'bit_score' => '287',
'alignment_length' => '542',
'identity_percentage' => '32.47',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'AT3G23640' => array(
'gene_id' => 'AT3G23640',
'e_value' => '1e-78',
'bit_score' => '288',
'alignment_length' => '556',
'identity_percentage' => '34.71',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'phs92320' => array(
'gene_id' => 'phs92320',
'e_value' => '5e-78',
'bit_score' => '288',
'alignment_length' => '502',
'identity_percentage' => '36.06',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P174336'
)
),
'WBGene00018682' => array(
'gene_id' => 'WBGene00018682',
'e_value' => '5e-78',
'bit_score' => '285',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00281G00070' => array(
'gene_id' => 'PP00281G00070',
'e_value' => '7e-78',
'bit_score' => '274',
'alignment_length' => '498',
'identity_percentage' => '34.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'CNC64A_019G00790' => array(
'gene_id' => 'CNC64A_019G00790',
'e_value' => '2e-77',
'bit_score' => '267',
'alignment_length' => '359',
'identity_percentage' => '40.11',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P080455'
)
),
'ATR_00065G01570' => array(
'gene_id' => 'ATR_00065G01570',
'e_value' => '1e-76',
'bit_score' => '280',
'alignment_length' => '634',
'identity_percentage' => '31.23',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00005G01250' => array(
'gene_id' => 'PP00005G01250',
'e_value' => '5e-76',
'bit_score' => '281',
'alignment_length' => '571',
'identity_percentage' => '33.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'pte180100' => array(
'gene_id' => 'pte180100',
'e_value' => '9e-76',
'bit_score' => '278',
'alignment_length' => '679',
'identity_percentage' => '29.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P050433'
)
),
'OS03G11720' => array(
'gene_id' => 'OS03G11720',
'e_value' => '2e-75',
'bit_score' => '276',
'alignment_length' => '657',
'identity_percentage' => '30.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'pte70280' => array(
'gene_id' => 'pte70280',
'e_value' => '4e-75',
'bit_score' => '275',
'alignment_length' => '733',
'identity_percentage' => '28.24',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P050433'
)
),
'AT5G63840' => array(
'gene_id' => 'AT5G63840',
'e_value' => '2e-74',
'bit_score' => '274',
'alignment_length' => '650',
'identity_percentage' => '31.38',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CV00G24690' => array(
'gene_id' => 'CV00G24690',
'e_value' => '3e-74',
'bit_score' => '273',
'alignment_length' => '640',
'identity_percentage' => '31.25',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ENSMUSG00000071650' => array(
'gene_id' => 'ENSMUSG00000071650',
'e_value' => '3e-74',
'bit_score' => '274',
'alignment_length' => '617',
'identity_percentage' => '31.28',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'BPRRCC1105_01G07160' => array(
'gene_id' => 'BPRRCC1105_01G07160',
'e_value' => '4e-74',
'bit_score' => '274',
'alignment_length' => '521',
'identity_percentage' => '31.86',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00041G01080' => array(
'gene_id' => 'PP00041G01080',
'e_value' => '4e-74',
'bit_score' => '275',
'alignment_length' => '572',
'identity_percentage' => '33.22',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'RCC4223.04g01620' => array(
'gene_id' => 'RCC4223.04g01620',
'e_value' => '5e-74',
'bit_score' => '273',
'alignment_length' => '637',
'identity_percentage' => '30.93',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PI00G24040' => array(
'gene_id' => 'PI00G24040',
'e_value' => '2e-73',
'bit_score' => '271',
'alignment_length' => '640',
'identity_percentage' => '30.78',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ATR_00048G01310' => array(
'gene_id' => 'ATR_00048G01310',
'e_value' => '4e-73',
'bit_score' => '271',
'alignment_length' => '684',
'identity_percentage' => '31.29',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'OS07G23944' => array(
'gene_id' => 'OS07G23944',
'e_value' => '4e-73',
'bit_score' => '270',
'alignment_length' => '675',
'identity_percentage' => '31.70',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'MP05G06760' => array(
'gene_id' => 'MP05G06760',
'e_value' => '7e-73',
'bit_score' => '270',
'alignment_length' => '549',
'identity_percentage' => '32.06',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'SPAPB24D3.10c' => array(
'gene_id' => 'SPAPB24D3.10c',
'e_value' => '1e-72',
'bit_score' => '269',
'alignment_length' => '358',
'identity_percentage' => '41.62',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'DDB_G0269154' => array(
'gene_id' => 'DDB_G0269154',
'e_value' => '1e-72',
'bit_score' => '268',
'alignment_length' => '691',
'identity_percentage' => '29.96',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00140G00390' => array(
'gene_id' => 'PP00140G00390',
'e_value' => '2e-72',
'bit_score' => '269',
'alignment_length' => '558',
'identity_percentage' => '33.15',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'PP00242G00250' => array(
'gene_id' => 'PP00242G00250',
'e_value' => '3e-72',
'bit_score' => '268',
'alignment_length' => '592',
'identity_percentage' => '31.76',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'VC00G110660' => array(
'gene_id' => 'VC00G110660',
'e_value' => '1e-71',
'bit_score' => '265',
'alignment_length' => '635',
'identity_percentage' => '30.71',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00109G00830' => array(
'gene_id' => 'PP00109G00830',
'e_value' => '2e-70',
'bit_score' => '262',
'alignment_length' => '556',
'identity_percentage' => '32.19',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CV00G74030' => array(
'gene_id' => 'CV00G74030',
'e_value' => '3e-70',
'bit_score' => '262',
'alignment_length' => '487',
'identity_percentage' => '34.91',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'SPAC1039.11c' => array(
'gene_id' => 'SPAC1039.11c',
'e_value' => '5e-70',
'bit_score' => '261',
'alignment_length' => '345',
'identity_percentage' => '40.29',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'Naga_100017g38' => array(
'gene_id' => 'Naga_100017g38',
'e_value' => '1e-69',
'bit_score' => '260',
'alignment_length' => '718',
'identity_percentage' => '29.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'phs303660' => array(
'gene_id' => 'phs303660',
'e_value' => '2e-69',
'bit_score' => '259',
'alignment_length' => '529',
'identity_percentage' => '31.19',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'SPAC30D11.01c' => array(
'gene_id' => 'SPAC30D11.01c',
'e_value' => '5e-69',
'bit_score' => '258',
'alignment_length' => '420',
'identity_percentage' => '37.86',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'PP00060G00720' => array(
'gene_id' => 'PP00060G00720',
'e_value' => '1e-68',
'bit_score' => '256',
'alignment_length' => '556',
'identity_percentage' => '33.09',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P009259'
)
),
'ccr158380' => array(
'gene_id' => 'ccr158380',
'e_value' => '9e-68',
'bit_score' => '254',
'alignment_length' => '654',
'identity_percentage' => '31.04',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'phs71090' => array(
'gene_id' => 'phs71090',
'e_value' => '2e-67',
'bit_score' => '241',
'alignment_length' => '408',
'identity_percentage' => '33.82',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P104467'
)
),
'FC002G01800' => array(
'gene_id' => 'FC002G01800',
'e_value' => '1e-66',
'bit_score' => '248',
'alignment_length' => '667',
'identity_percentage' => '28.79',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'FBgn0027588' => array(
'gene_id' => 'FBgn0027588',
'e_value' => '4e-66',
'bit_score' => '248',
'alignment_length' => '608',
'identity_percentage' => '31.25',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'TP07G02080' => array(
'gene_id' => 'TP07G02080',
'e_value' => '5e-66',
'bit_score' => '247',
'alignment_length' => '683',
'identity_percentage' => '28.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CR03G10710' => array(
'gene_id' => 'CR03G10710',
'e_value' => '8e-66',
'bit_score' => '247',
'alignment_length' => '641',
'identity_percentage' => '29.95',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'SPAC1002.03c' => array(
'gene_id' => 'SPAC1002.03c',
'e_value' => '3e-65',
'bit_score' => '246',
'alignment_length' => '560',
'identity_percentage' => '31.25',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'gsu126010' => array(
'gene_id' => 'gsu126010',
'e_value' => '1e-64',
'bit_score' => '244',
'alignment_length' => '595',
'identity_percentage' => '29.92',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'WBGene00009583' => array(
'gene_id' => 'WBGene00009583',
'e_value' => '2e-61',
'bit_score' => '233',
'alignment_length' => '652',
'identity_percentage' => '26.53',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'HE0000G07800' => array(
'gene_id' => 'HE0000G07800',
'e_value' => '8e-61',
'bit_score' => '230',
'alignment_length' => '528',
'identity_percentage' => '31.06',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'YBR229C' => array(
'gene_id' => 'YBR229C',
'e_value' => '3e-57',
'bit_score' => '220',
'alignment_length' => '602',
'identity_percentage' => '28.74',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CM13G00820' => array(
'gene_id' => 'CM13G00820',
'e_value' => '9e-57',
'bit_score' => '219',
'alignment_length' => '592',
'identity_percentage' => '29.22',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PTI_05G01610' => array(
'gene_id' => 'PTI_05G01610',
'e_value' => '2e-56',
'bit_score' => '218',
'alignment_length' => '700',
'identity_percentage' => '28.14',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'emh160400' => array(
'gene_id' => 'emh160400',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'emh626580' => array(
'gene_id' => 'emh626580',
'e_value' => '1e-53',
'bit_score' => '207',
'alignment_length' => '653',
'identity_percentage' => '26.65',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'AA0001G01930' => array(
'gene_id' => 'AA0001G01930',
'e_value' => '4e-53',
'bit_score' => '210',
'alignment_length' => '630',
'identity_percentage' => '29.21',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'phs71110' => array(
'gene_id' => 'phs71110',
'e_value' => '3e-50',
'bit_score' => '199',
'alignment_length' => '397',
'identity_percentage' => '34.51',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P051673'
)
),
'CR03G11570' => array(
'gene_id' => 'CR03G11570',
'e_value' => '2e-49',
'bit_score' => '197',
'alignment_length' => '523',
'identity_percentage' => '29.45',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P000377'
)
),
'AP00G19080' => array(
'gene_id' => 'AP00G19080',
'e_value' => '1e-48',
'bit_score' => '194',
'alignment_length' => '424',
'identity_percentage' => '31.84',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'ES0080G00420' => array(
'gene_id' => 'ES0080G00420',
'e_value' => '1e-46',
'bit_score' => '182',
'alignment_length' => '588',
'identity_percentage' => '26.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'CNC64A_034G00560' => array(
'gene_id' => 'CNC64A_034G00560',
'e_value' => '2e-46',
'bit_score' => '183',
'alignment_length' => '601',
'identity_percentage' => '27.79',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P158659'
)
),
'PP00065G00350' => array(
'gene_id' => 'PP00065G00350',
'e_value' => '2e-43',
'bit_score' => '170',
'alignment_length' => '302',
'identity_percentage' => '32.78',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P159804'
)
),
'emh472720' => array(
'gene_id' => 'emh472720',
'e_value' => '4e-38',
'bit_score' => '160',
'alignment_length' => '590',
'identity_percentage' => '27.46',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P209776'
)
),
'ORCC809_08G02600' => array(
'gene_id' => 'ORCC809_08G02600',
'e_value' => '5e-37',
'bit_score' => '157',
'alignment_length' => '337',
'identity_percentage' => '29.38',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'RCC4223.199g00040' => array(
'gene_id' => 'RCC4223.199g00040',
'e_value' => '2e-36',
'bit_score' => '154',
'alignment_length' => '550',
'identity_percentage' => '25.27',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'gsu139510' => array(
'gene_id' => 'gsu139510',
'e_value' => '6e-34',
'bit_score' => '146',
'alignment_length' => '616',
'identity_percentage' => '26.30',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'CNC64A_034G00570' => array(
'gene_id' => 'CNC64A_034G00570',
'e_value' => '6e-31',
'bit_score' => '124',
'alignment_length' => '86',
'identity_percentage' => '61.63',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P113797'
)
),
'ATR_00079G00090' => array(
'gene_id' => 'ATR_00079G00090',
'e_value' => '3e-27',
'bit_score' => '118',
'alignment_length' => '213',
'identity_percentage' => '38.03',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P186939'
)
),
'emh552990' => array(
'gene_id' => 'emh552990',
'e_value' => '7e-21',
'bit_score' => '104',
'alignment_length' => '588',
'identity_percentage' => '23.98',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P201802'
)
),
'OT_08G03880' => array(
'gene_id' => 'OT_08G03880',
'e_value' => '8e-15',
'bit_score' => '84.3',
'alignment_length' => '387',
'identity_percentage' => '23.00',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'emh746930' => array(
'gene_id' => 'emh746930',
'e_value' => '3e-14',
'bit_score' => '82.8',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'emh564800' => array(
'gene_id' => 'emh564800',
'e_value' => '4e-14',
'bit_score' => '82.0',
'alignment_length' => '448',
'identity_percentage' => '23.66',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P024786'
)
),
'gsu133460' => array(
'gene_id' => 'gsu133460',
'e_value' => '2e-13',
'bit_score' => '77.4',
'alignment_length' => '206',
'identity_percentage' => '30.10',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'MP05G04870' => array(
'gene_id' => 'MP05G04870',
'e_value' => '1e-12',
'bit_score' => '77.0',
'alignment_length' => '580',
'identity_percentage' => '22.59',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'ATR_00095G00110' => array(
'gene_id' => 'ATR_00095G00110',
'e_value' => '2e-12',
'bit_score' => '77.0',
'alignment_length' => '596',
'identity_percentage' => '21.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'CM06G01210' => array(
'gene_id' => 'CM06G01210',
'e_value' => '3e-12',
'bit_score' => '76.3',
'alignment_length' => '495',
'identity_percentage' => '21.62',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P020542'
)
),
'Naga_100114g11' => array(
'gene_id' => 'Naga_100114g11',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '210',
'identity_percentage' => '30.95',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'OM_16G02430' => array(
'gene_id' => 'OM_16G02430',
'e_value' => '6e-12',
'bit_score' => '75.1',
'alignment_length' => '388',
'identity_percentage' => '22.68',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'MRCC299_08G03350' => array(
'gene_id' => 'MRCC299_08G03350',
'e_value' => '7e-12',
'bit_score' => '74.7',
'alignment_length' => '590',
'identity_percentage' => '21.86',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'OL08G03830' => array(
'gene_id' => 'OL08G03830',
'e_value' => '7e-12',
'bit_score' => '74.3',
'alignment_length' => '506',
'identity_percentage' => '23.12',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'CNC64A_529G00010' => array(
'gene_id' => 'CNC64A_529G00010',
'e_value' => '1e-11',
'bit_score' => '69.3',
'alignment_length' => '85',
'identity_percentage' => '37.65',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P106179'
)
),
'CNC64A_025G00750' => array(
'gene_id' => 'CNC64A_025G00750',
'e_value' => '2e-11',
'bit_score' => '72.4',
'alignment_length' => '171',
'identity_percentage' => '28.07',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P001010'
)
),
'PP00041G01100' => array(
'gene_id' => 'PP00041G01100',
'e_value' => '8e-11',
'bit_score' => '71.2',
'alignment_length' => '600',
'identity_percentage' => '21.83',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'gsu63580' => array(
'gene_id' => 'gsu63580',
'e_value' => '2e-10',
'bit_score' => '70.5',
'alignment_length' => '300',
'identity_percentage' => '23.67',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P020542'
)
),
'BPRRCC1105_01G05990' => array(
'gene_id' => 'BPRRCC1105_01G05990',
'e_value' => '1e-09',
'bit_score' => '67.8',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
),
'emh123040' => array(
'gene_id' => 'emh123040',
'e_value' => '4e-08',
'bit_score' => '62.8',
'alignment_length' => '180',
'identity_percentage' => '27.22',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P048023'
)
),
'OM_03G03260' => array(
'gene_id' => 'OM_03G03260',
'e_value' => '5e-08',
'bit_score' => '62.0',
'alignment_length' => '197',
'identity_percentage' => '28.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P003722',
'ORTHOFAM' => 'ORTHO03P003860'
)
),
'FBgn0261575' => array(
'gene_id' => 'FBgn0261575',
'e_value' => '7e-08',
'bit_score' => '61.6',
'alignment_length' => '197',
'identity_percentage' => '26.90',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P003722',
'ORTHOFAM' => 'ORTHO03P003860'
)
),
'emh362880' => array(
'gene_id' => 'emh362880',
'e_value' => '9e-08',
'bit_score' => '61.6',
'alignment_length' => '156',
'identity_percentage' => '28.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P048023'
)
),
'FC006G00220' => array(
'gene_id' => 'FC006G00220',
'e_value' => '5e-07',
'bit_score' => '58.9',
'alignment_length' => '308',
'identity_percentage' => '22.73',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P009893',
'ORTHOFAM' => 'ORTHO03P020542'
)
),
'ORCC809_04G02780' => array(
'gene_id' => 'ORCC809_04G02780',
'e_value' => '9e-07',
'bit_score' => '57.4',
'alignment_length' => '212',
'identity_percentage' => '26.42',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P003722',
'ORTHOFAM' => 'ORTHO03P003860'
)
),
'ORCC809_12G00530' => array(
'gene_id' => 'ORCC809_12G00530',
'e_value' => '9e-07',
'bit_score' => '58.2',
'alignment_length' => '364',
'identity_percentage' => '24.18',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P005572',
'ORTHOFAM' => 'ORTHO03P005276'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000027790',
(int) 1 => 'ENSMUSG00000068587',
(int) 2 => 'ENSMUSG00000062646',
(int) 3 => 'ENSMUSG00000071650'
),
'hom' => array(
(int) 0 => 'ENSG00000090402',
(int) 1 => 'ENSG00000257335',
(int) 2 => 'ENSG00000278563',
(int) 3 => 'ENSG00000257743',
(int) 4 => 'ENSG00000214013'
),
'cel' => array(
(int) 0 => 'WBGene00017071',
(int) 1 => 'WBGene00019895',
(int) 2 => 'WBGene00018682',
(int) 3 => 'WBGene00009583'
),
'ddi' => array(
(int) 0 => 'DDB_G0269790',
(int) 1 => 'DDB_G0269154'
),
'ppa' => array(
(int) 0 => 'PP00264G00160',
(int) 1 => 'PP00013G02430',
(int) 2 => 'PP00119G00640',
(int) 3 => 'PP00086G00660',
(int) 4 => 'PP00011G01860',
(int) 5 => 'PP00025G00520',
(int) 6 => 'PP00043G00100',
(int) 7 => 'PP00080G01120',
(int) 8 => 'PP00006G00120',
(int) 9 => 'PP00245G00510',
(int) 10 => 'PP00157G00350',
(int) 11 => 'PP00264G00120',
(int) 12 => 'PP00281G00070',
(int) 13 => 'PP00005G01250',
(int) 14 => 'PP00041G01080',
(int) 15 => 'PP00140G00390',
(int) 16 => 'PP00242G00250',
(int) 17 => 'PP00109G00830',
(int) 18 => 'PP00060G00720',
(int) 19 => 'PP00065G00350',
(int) 20 => 'PP00041G01100'
),
'phs' => array(
(int) 0 => 'phs293220',
(int) 1 => 'phs293240',
(int) 2 => 'phs92320',
(int) 3 => 'phs303660',
(int) 4 => 'phs71090',
(int) 5 => 'phs71110'
),
'osa' => array(
(int) 0 => 'OS06G46340',
(int) 1 => 'OS06G46284',
(int) 2 => 'OS01G03950',
(int) 3 => 'OS07G23880',
(int) 4 => 'OS03G11720',
(int) 5 => 'OS07G23944'
),
'ath' => array(
(int) 0 => 'AT5G11720',
(int) 1 => 'AT3G45940',
(int) 2 => 'AT1G68560',
(int) 3 => 'AT3G23640',
(int) 4 => 'AT5G63840'
),
'atr' => array(
(int) 0 => 'ATR_00092G00960',
(int) 1 => 'ATR_00079G00110',
(int) 2 => 'ATR_00079G00080',
(int) 3 => 'ATR_00065G01570',
(int) 4 => 'ATR_00048G01310',
(int) 5 => 'ATR_00079G00090',
(int) 6 => 'ATR_00095G00110'
),
'acg' => array(
(int) 0 => 'AC00G97780',
(int) 1 => 'AC00G02390',
(int) 2 => 'AC00G77390'
),
'cvu' => array(
(int) 0 => 'CV00G66180',
(int) 1 => 'CV00G33310',
(int) 2 => 'CV00G87890',
(int) 3 => 'CV00G66200',
(int) 4 => 'CV00G24690',
(int) 5 => 'CV00G74030'
),
'apr' => array(
(int) 0 => 'AP00G35250',
(int) 1 => 'AP00G19080'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_008G02740',
(int) 1 => 'CNC64A_019G00790',
(int) 2 => 'CNC64A_034G00560',
(int) 3 => 'CNC64A_034G00570',
(int) 4 => 'CNC64A_025G00750'
),
'hsp' => array(
(int) 0 => 'HE0000G25410',
(int) 1 => 'HE0000G07800'
),
'pte' => array(
(int) 0 => 'pte374950',
(int) 1 => 'pte268290',
(int) 2 => 'pte323710',
(int) 3 => 'pte186640',
(int) 4 => 'pte388210',
(int) 5 => 'pte180100',
(int) 6 => 'pte70280'
),
'ota' => array(
(int) 0 => 'OT_08G02830',
(int) 1 => 'OT_08G03880'
),
'ome' => array(
(int) 0 => 'OM_16G01380',
(int) 1 => 'OM_16G02430',
(int) 2 => 'OM_03G03260'
),
'olu' => array(
(int) 0 => 'OL08G02650',
(int) 1 => 'OL08G03830'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G05390',
(int) 1 => 'MRCC299_08G03350'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_01G07160',
(int) 1 => 'BPRRCC1105_01G05990'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.04g01620',
(int) 1 => 'RCC4223.199g00040'
),
'pse3' => array(
(int) 0 => 'PI00G24040'
),
'mpu' => array(
(int) 0 => 'MP05G06760',
(int) 1 => 'MP05G04870'
),
'scp' => array(
(int) 0 => 'SPAPB24D3.10c',
(int) 1 => 'SPAC1039.11c',
(int) 2 => 'SPAC30D11.01c',
(int) 3 => 'SPAC1002.03c'
),
'vca' => array(
(int) 0 => 'VC00G110660'
),
'nga' => array(
(int) 0 => 'Naga_100017g38',
(int) 1 => 'Naga_100114g11'
),
'ccr' => array(
(int) 0 => 'ccr158380'
),
'fcy' => array(
(int) 0 => 'FC002G01800',
(int) 1 => 'FC006G00220'
),
'drm' => array(
(int) 0 => 'FBgn0027588',
(int) 1 => 'FBgn0261575'
),
'tps' => array(
(int) 0 => 'TP07G02080'
),
'cre' => array(
(int) 0 => 'CR03G10710',
(int) 1 => 'CR03G11570'
),
'gsu' => array(
(int) 0 => 'gsu126010',
(int) 1 => 'gsu139510',
(int) 2 => 'gsu133460',
(int) 3 => 'gsu63580'
),
'sac' => array(
(int) 0 => 'YBR229C'
),
'cme' => array(
(int) 0 => 'CM13G00820',
(int) 1 => 'CM06G01210'
),
'ptri' => array(
(int) 0 => 'PTI_05G01610'
),
'emh' => array(
(int) 0 => 'emh160400',
(int) 1 => 'emh626580',
(int) 2 => 'emh472720',
(int) 3 => 'emh552990',
(int) 4 => 'emh746930',
(int) 5 => 'emh564800',
(int) 6 => 'emh123040',
(int) 7 => 'emh362880'
),
'aan' => array(
(int) 0 => 'AA0001G01930'
),
'esi' => array(
(int) 0 => 'ES0080G00420'
),
'orcc809' => array(
(int) 0 => 'ORCC809_08G02600',
(int) 1 => 'ORCC809_04G02780',
(int) 2 => 'ORCC809_12G00530'
)
)
$gene_id = 'ENSMUSG00000027790'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000027790'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'CNC64A_011G02000'
$gf_placeholder = 'HOM03P008161'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_529G00010',
'e_value' => '1e-11',
'bit_score' => '69.3',
'alignment_length' => '85',
'identity_percentage' => '37.65',
'gf' => array(
'HOMFAM' => 'HOM03P000322',
'ORTHOFAM' => 'ORTHO03P106179'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_529G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
1e-11 |
69.3 |
85 |
37.65 |
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench