|
CNC64A_167G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000022365' => array(
'gene_id' => 'ENSMUSG00000022365',
'e_value' => '2e-180',
'bit_score' => '503',
'alignment_length' => '252',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00000843' => array(
'gene_id' => 'WBGene00000843',
'e_value' => '8e-71',
'bit_score' => '224',
'alignment_length' => '252',
'identity_percentage' => '47.62',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0031376' => array(
'gene_id' => 'FBgn0031376',
'e_value' => '6e-61',
'bit_score' => '199',
'alignment_length' => '250',
'identity_percentage' => '42.40',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'PI00G03570' => array(
'gene_id' => 'PI00G03570',
'e_value' => '4e-33',
'bit_score' => '125',
'alignment_length' => '221',
'identity_percentage' => '33.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.05g04730' => array(
'gene_id' => 'RCC4223.05g04730',
'e_value' => '4e-32',
'bit_score' => '123',
'alignment_length' => '224',
'identity_percentage' => '31.70',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_13G00520' => array(
'gene_id' => 'ORCC809_13G00520',
'e_value' => '1e-31',
'bit_score' => '122',
'alignment_length' => '238',
'identity_percentage' => '31.93',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000099958' => array(
'gene_id' => 'ENSG00000099958',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000274437' => array(
'gene_id' => 'ENSG00000274437',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'OS05G09550' => array(
'gene_id' => 'OS05G09550',
'e_value' => '2e-30',
'bit_score' => '119',
'alignment_length' => '255',
'identity_percentage' => '29.80',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000009092' => array(
'gene_id' => 'ENSMUSG00000009092',
'e_value' => '7e-30',
'bit_score' => '117',
'alignment_length' => '199',
'identity_percentage' => '34.67',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'phs171120' => array(
'gene_id' => 'phs171120',
'e_value' => '8e-30',
'bit_score' => '117',
'alignment_length' => '253',
'identity_percentage' => '33.20',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G24210' => array(
'gene_id' => 'HE0000G24210',
'e_value' => '1e-29',
'bit_score' => '117',
'alignment_length' => '243',
'identity_percentage' => '31.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OS03G63520' => array(
'gene_id' => 'OS03G63520',
'e_value' => '2e-29',
'bit_score' => '117',
'alignment_length' => '216',
'identity_percentage' => '34.26',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OM_08G01820' => array(
'gene_id' => 'OM_08G01820',
'e_value' => '1e-28',
'bit_score' => '114',
'alignment_length' => '255',
'identity_percentage' => '29.02',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'OL21G00500' => array(
'gene_id' => 'OL21G00500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OL13G02500' => array(
'gene_id' => 'OL13G02500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'AT4G21810' => array(
'gene_id' => 'AT4G21810',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '216',
'identity_percentage' => '33.80',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0288833' => array(
'gene_id' => 'DDB_G0288833',
'e_value' => '3e-28',
'bit_score' => '113',
'alignment_length' => '250',
'identity_percentage' => '32.40',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_002G04430' => array(
'gene_id' => 'CNC64A_002G04430',
'e_value' => '9e-28',
'bit_score' => '112',
'alignment_length' => '212',
'identity_percentage' => '33.96',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'PP00068G01090' => array(
'gene_id' => 'PP00068G01090',
'e_value' => '1e-27',
'bit_score' => '111',
'alignment_length' => '219',
'identity_percentage' => '34.25',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_04G02020' => array(
'gene_id' => 'BPRRCC1105_04G02020',
'e_value' => '1e-27',
'bit_score' => '112',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0038438' => array(
'gene_id' => 'FBgn0038438',
'e_value' => '2e-27',
'bit_score' => '111',
'alignment_length' => '209',
'identity_percentage' => '32.54',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'CV00G18770' => array(
'gene_id' => 'CV00G18770',
'e_value' => '2e-27',
'bit_score' => '110',
'alignment_length' => '250',
'identity_percentage' => '33.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00062G00960' => array(
'gene_id' => 'ATR_00062G00960',
'e_value' => '3e-27',
'bit_score' => '110',
'alignment_length' => '241',
'identity_percentage' => '32.78',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT4G29330' => array(
'gene_id' => 'AT4G29330',
'e_value' => '4e-27',
'bit_score' => '110',
'alignment_length' => '231',
'identity_percentage' => '29.87',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G04860' => array(
'gene_id' => 'AT4G04860',
'e_value' => '5e-27',
'bit_score' => '110',
'alignment_length' => '216',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PTI_12G00180' => array(
'gene_id' => 'PTI_12G00180',
'e_value' => '7e-27',
'bit_score' => '109',
'alignment_length' => '221',
'identity_percentage' => '34.84',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'PP00226G00370' => array(
'gene_id' => 'PP00226G00370',
'e_value' => '8e-27',
'bit_score' => '109',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G18340' => array(
'gene_id' => 'AP00G18340',
'e_value' => '9e-27',
'bit_score' => '108',
'alignment_length' => '212',
'identity_percentage' => '31.60',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_06G02830' => array(
'gene_id' => 'MRCC299_06G02830',
'e_value' => '3e-26',
'bit_score' => '108',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0285131' => array(
'gene_id' => 'DDB_G0285131',
'e_value' => '5e-26',
'bit_score' => '107',
'alignment_length' => '208',
'identity_percentage' => '31.73',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'FC027G02270' => array(
'gene_id' => 'FC027G02270',
'e_value' => '1e-25',
'bit_score' => '105',
'alignment_length' => '194',
'identity_percentage' => '35.57',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'gsu16030' => array(
'gene_id' => 'gsu16030',
'e_value' => '3e-25',
'bit_score' => '104',
'alignment_length' => '195',
'identity_percentage' => '36.41',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'OT_13G02650' => array(
'gene_id' => 'OT_13G02650',
'e_value' => '4e-25',
'bit_score' => '104',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100030g4' => array(
'gene_id' => 'Naga_100030g4',
'e_value' => '1e-24',
'bit_score' => '104',
'alignment_length' => '206',
'identity_percentage' => '33.50',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G63120' => array(
'gene_id' => 'CV00G63120',
'e_value' => '2e-24',
'bit_score' => '102',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'MP09G02920' => array(
'gene_id' => 'MP09G02920',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '216',
'identity_percentage' => '31.48',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'CV00G18750' => array(
'gene_id' => 'CV00G18750',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '250',
'identity_percentage' => '31.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00020109' => array(
'gene_id' => 'WBGene00020109',
'e_value' => '6e-24',
'bit_score' => '101',
'alignment_length' => '214',
'identity_percentage' => '29.91',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'TP06G07000' => array(
'gene_id' => 'TP06G07000',
'e_value' => '1e-23',
'bit_score' => '100',
'alignment_length' => '209',
'identity_percentage' => '32.06',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'emh750850' => array(
'gene_id' => 'emh750850',
'e_value' => '2e-23',
'bit_score' => '99.8',
'alignment_length' => '244',
'identity_percentage' => '29.10',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'PTI_13G02740' => array(
'gene_id' => 'PTI_13G02740',
'e_value' => '3e-23',
'bit_score' => '100',
'alignment_length' => '246',
'identity_percentage' => '31.71',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'CM09G01590' => array(
'gene_id' => 'CM09G01590',
'e_value' => '4e-23',
'bit_score' => '99.8',
'alignment_length' => '271',
'identity_percentage' => '29.52',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105800' => array(
'gene_id' => 'VC00G105800',
'e_value' => '6e-23',
'bit_score' => '99.0',
'alignment_length' => '210',
'identity_percentage' => '30.48',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100004g172' => array(
'gene_id' => 'Naga_100004g172',
'e_value' => '9e-23',
'bit_score' => '99.4',
'alignment_length' => '208',
'identity_percentage' => '31.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR12G08730' => array(
'gene_id' => 'CR12G08730',
'e_value' => '9e-23',
'bit_score' => '98.2',
'alignment_length' => '217',
'identity_percentage' => '31.80',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_07G00150' => array(
'gene_id' => 'BPRRCC1105_07G00150',
'e_value' => '1e-22',
'bit_score' => '98.2',
'alignment_length' => '249',
'identity_percentage' => '29.32',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'emh659390' => array(
'gene_id' => 'emh659390',
'e_value' => '1e-22',
'bit_score' => '97.4',
'alignment_length' => '245',
'identity_percentage' => '31.84',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ES0334G00070' => array(
'gene_id' => 'ES0334G00070',
'e_value' => '2e-22',
'bit_score' => '97.4',
'alignment_length' => '191',
'identity_percentage' => '32.98',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'pte104470' => array(
'gene_id' => 'pte104470',
'e_value' => '2e-22',
'bit_score' => '97.1',
'alignment_length' => '200',
'identity_percentage' => '32.00',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'MP01G00760' => array(
'gene_id' => 'MP01G00760',
'e_value' => '4e-22',
'bit_score' => '96.7',
'alignment_length' => '222',
'identity_percentage' => '30.63',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'ES0180G00150' => array(
'gene_id' => 'ES0180G00150',
'e_value' => '8e-22',
'bit_score' => '96.3',
'alignment_length' => '218',
'identity_percentage' => '34.40',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11450' => array(
'gene_id' => 'AC00G11450',
'e_value' => '9e-22',
'bit_score' => '95.9',
'alignment_length' => '219',
'identity_percentage' => '30.14',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'gsu96750' => array(
'gene_id' => 'gsu96750',
'e_value' => '1e-21',
'bit_score' => '95.1',
'alignment_length' => '260',
'identity_percentage' => '31.54',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'phs173810' => array(
'gene_id' => 'phs173810',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '225',
'identity_percentage' => '28.89',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G131550' => array(
'gene_id' => 'VC00G131550',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00056G01300' => array(
'gene_id' => 'ATR_00056G01300',
'e_value' => '7e-21',
'bit_score' => '92.8',
'alignment_length' => '207',
'identity_percentage' => '30.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AA0023G00650' => array(
'gene_id' => 'AA0023G00650',
'e_value' => '2e-20',
'bit_score' => '90.5',
'alignment_length' => '185',
'identity_percentage' => '30.81',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'PP00213G00320' => array(
'gene_id' => 'PP00213G00320',
'e_value' => '2e-20',
'bit_score' => '91.7',
'alignment_length' => '216',
'identity_percentage' => '29.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OT_03G06050' => array(
'gene_id' => 'OT_03G06050',
'e_value' => '4e-20',
'bit_score' => '90.5',
'alignment_length' => '260',
'identity_percentage' => '29.62',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'OM_07G04780' => array(
'gene_id' => 'OM_07G04780',
'e_value' => '1e-19',
'bit_score' => '89.4',
'alignment_length' => '258',
'identity_percentage' => '28.29',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'TP06G04610' => array(
'gene_id' => 'TP06G04610',
'e_value' => '1e-19',
'bit_score' => '88.2',
'alignment_length' => '212',
'identity_percentage' => '32.55',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_01G00860' => array(
'gene_id' => 'MRCC299_01G00860',
'e_value' => '2e-19',
'bit_score' => '88.6',
'alignment_length' => '241',
'identity_percentage' => '27.80',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100052g22' => array(
'gene_id' => 'Naga_100052g22',
'e_value' => '4e-19',
'bit_score' => '89.0',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CM11G01620' => array(
'gene_id' => 'CM11G01620',
'e_value' => '5e-19',
'bit_score' => '87.0',
'alignment_length' => '205',
'identity_percentage' => '33.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CR15G00540' => array(
'gene_id' => 'CR15G00540',
'e_value' => '1e-18',
'bit_score' => '86.7',
'alignment_length' => '199',
'identity_percentage' => '31.16',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_06G06880' => array(
'gene_id' => 'ORCC809_06G06880',
'e_value' => '2e-17',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '29.81',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'pte422770' => array(
'gene_id' => 'pte422770',
'e_value' => '2e-16',
'bit_score' => '79.3',
'alignment_length' => '204',
'identity_percentage' => '30.39',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPBC365.08c' => array(
'gene_id' => 'SPBC365.08c',
'e_value' => '2e-15',
'bit_score' => '76.6',
'alignment_length' => '170',
'identity_percentage' => '31.18',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'pte33160' => array(
'gene_id' => 'pte33160',
'e_value' => '3e-15',
'bit_score' => '76.3',
'alignment_length' => '207',
'identity_percentage' => '28.02',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'emh645640' => array(
'gene_id' => 'emh645640',
'e_value' => '1e-14',
'bit_score' => '73.6',
'alignment_length' => '187',
'identity_percentage' => '28.34',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OL03G05850' => array(
'gene_id' => 'OL03G05850',
'e_value' => '2e-14',
'bit_score' => '73.6',
'alignment_length' => '206',
'identity_percentage' => '29.61',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01340' => array(
'gene_id' => 'RCC4223.04g01340',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '257',
'identity_percentage' => '30.35',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'pte656850' => array(
'gene_id' => 'pte656850',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '189',
'identity_percentage' => '27.51',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte37960' => array(
'gene_id' => 'pte37960',
'e_value' => '2e-12',
'bit_score' => '66.6',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PI00G24270' => array(
'gene_id' => 'PI00G24270',
'e_value' => '7e-12',
'bit_score' => '67.0',
'alignment_length' => '258',
'identity_percentage' => '29.07',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_167G00010' => array(
'gene_id' => 'CNC64A_167G00010',
'e_value' => '1e-11',
'bit_score' => '65.9',
'alignment_length' => '249',
'identity_percentage' => '27.71',
'gf' => array(
[maximum depth reached]
)
),
'FC012G02490' => array(
'gene_id' => 'FC012G02490',
'e_value' => '6e-11',
'bit_score' => '64.7',
'alignment_length' => '194',
'identity_percentage' => '32.47',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100786g2' => array(
'gene_id' => 'Naga_100786g2',
'e_value' => '6e-10',
'bit_score' => '62.8',
'alignment_length' => '219',
'identity_percentage' => '27.40',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G88370' => array(
'gene_id' => 'AC00G88370',
'e_value' => '6e-10',
'bit_score' => '60.8',
'alignment_length' => '202',
'identity_percentage' => '28.71',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'TP04G07930' => array(
'gene_id' => 'TP04G07930',
'e_value' => '1e-09',
'bit_score' => '58.9',
'alignment_length' => '165',
'identity_percentage' => '29.70',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'FC007G04730' => array(
'gene_id' => 'FC007G04730',
'e_value' => '2e-09',
'bit_score' => '59.3',
'alignment_length' => '223',
'identity_percentage' => '29.15',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'FC001G09060' => array(
'gene_id' => 'FC001G09060',
'e_value' => '3e-09',
'bit_score' => '58.9',
'alignment_length' => '187',
'identity_percentage' => '24.06',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'FC004G05820' => array(
'gene_id' => 'FC004G05820',
'e_value' => '1e-08',
'bit_score' => '58.5',
'alignment_length' => '209',
'identity_percentage' => '25.84',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'ES0149G00240' => array(
'gene_id' => 'ES0149G00240',
'e_value' => '3e-08',
'bit_score' => '57.8',
'alignment_length' => '165',
'identity_percentage' => '28.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'emh724700' => array(
'gene_id' => 'emh724700',
'e_value' => '3e-07',
'bit_score' => '54.7',
'alignment_length' => '179',
'identity_percentage' => '24.58',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1687.17c' => array(
'gene_id' => 'SPAC1687.17c',
'e_value' => '3e-07',
'bit_score' => '53.1',
'alignment_length' => '187',
'identity_percentage' => '26.20',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'PTI_09G00960' => array(
'gene_id' => 'PTI_09G00960',
'e_value' => '4e-07',
'bit_score' => '53.9',
'alignment_length' => '184',
'identity_percentage' => '26.63',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'TP15G00800' => array(
'gene_id' => 'TP15G00800',
'e_value' => '6e-07',
'bit_score' => '53.5',
'alignment_length' => '257',
'identity_percentage' => '25.68',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'YDR411C' => array(
'gene_id' => 'YDR411C',
'e_value' => '9e-07',
'bit_score' => '53.1',
'alignment_length' => '195',
'identity_percentage' => '27.18',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'AA0005G03020' => array(
'gene_id' => 'AA0005G03020',
'e_value' => '1e-06',
'bit_score' => '50.1',
'alignment_length' => '98',
'identity_percentage' => '35.71',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G41290' => array(
'gene_id' => 'HE0000G41290',
'e_value' => '2e-06',
'bit_score' => '49.7',
'alignment_length' => '88',
'identity_percentage' => '29.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000022365',
(int) 1 => 'ENSMUSG00000009092'
),
'cel' => array(
(int) 0 => 'WBGene00000843',
(int) 1 => 'WBGene00020109'
),
'drm' => array(
(int) 0 => 'FBgn0031376',
(int) 1 => 'FBgn0038438'
),
'pse3' => array(
(int) 0 => 'PI00G03570',
(int) 1 => 'PI00G24270'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.05g04730',
(int) 1 => 'RCC4223.04g01340'
),
'orcc809' => array(
(int) 0 => 'ORCC809_13G00520',
(int) 1 => 'ORCC809_06G06880'
),
'hom' => array(
(int) 0 => 'ENSG00000099958',
(int) 1 => 'ENSG00000274437'
),
'osa' => array(
(int) 0 => 'OS05G09550',
(int) 1 => 'OS03G63520'
),
'phs' => array(
(int) 0 => 'phs171120',
(int) 1 => 'phs173810'
),
'hsp' => array(
(int) 0 => 'HE0000G24210',
(int) 1 => 'HE0000G41290'
),
'ome' => array(
(int) 0 => 'OM_08G01820',
(int) 1 => 'OM_07G04780'
),
'olu' => array(
(int) 0 => 'OL21G00500',
(int) 1 => 'OL13G02500',
(int) 2 => 'OL03G05850'
),
'ath' => array(
(int) 0 => 'AT4G21810',
(int) 1 => 'AT4G29330',
(int) 2 => 'AT4G04860'
),
'ddi' => array(
(int) 0 => 'DDB_G0288833',
(int) 1 => 'DDB_G0285131'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_002G04430'
),
'ppa' => array(
(int) 0 => 'PP00068G01090',
(int) 1 => 'PP00226G00370',
(int) 2 => 'PP00213G00320'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_04G02020',
(int) 1 => 'BPRRCC1105_07G00150'
),
'cvu' => array(
(int) 0 => 'CV00G18770',
(int) 1 => 'CV00G63120',
(int) 2 => 'CV00G18750'
),
'atr' => array(
(int) 0 => 'ATR_00062G00960',
(int) 1 => 'ATR_00056G01300'
),
'ptri' => array(
(int) 0 => 'PTI_12G00180',
(int) 1 => 'PTI_13G02740',
(int) 2 => 'PTI_09G00960'
),
'apr' => array(
(int) 0 => 'AP00G18340'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_06G02830',
(int) 1 => 'MRCC299_01G00860'
),
'fcy' => array(
(int) 0 => 'FC027G02270',
(int) 1 => 'FC012G02490',
(int) 2 => 'FC007G04730',
(int) 3 => 'FC001G09060',
(int) 4 => 'FC004G05820'
),
'gsu' => array(
(int) 0 => 'gsu16030',
(int) 1 => 'gsu96750'
),
'ota' => array(
(int) 0 => 'OT_13G02650',
(int) 1 => 'OT_03G06050'
),
'nga' => array(
(int) 0 => 'Naga_100030g4',
(int) 1 => 'Naga_100004g172',
(int) 2 => 'Naga_100052g22',
(int) 3 => 'Naga_100786g2'
),
'mpu' => array(
(int) 0 => 'MP09G02920',
(int) 1 => 'MP01G00760'
),
'tps' => array(
(int) 0 => 'TP06G07000',
(int) 1 => 'TP06G04610',
(int) 2 => 'TP04G07930',
(int) 3 => 'TP15G00800'
),
'emh' => array(
(int) 0 => 'emh750850',
(int) 1 => 'emh659390',
(int) 2 => 'emh645640',
(int) 3 => 'emh724700'
),
'cme' => array(
(int) 0 => 'CM09G01590',
(int) 1 => 'CM11G01620'
),
'vca' => array(
(int) 0 => 'VC00G105800',
(int) 1 => 'VC00G131550'
),
'cre' => array(
(int) 0 => 'CR12G08730',
(int) 1 => 'CR15G00540'
),
'esi' => array(
(int) 0 => 'ES0334G00070',
(int) 1 => 'ES0180G00150',
(int) 2 => 'ES0149G00240'
),
'pte' => array(
(int) 0 => 'pte104470',
(int) 1 => 'pte422770',
(int) 2 => 'pte33160',
(int) 3 => 'pte656850',
(int) 4 => 'pte37960'
),
'acg' => array(
(int) 0 => 'AC00G11450',
(int) 1 => 'AC00G88370'
),
'aan' => array(
(int) 0 => 'AA0023G00650',
(int) 1 => 'AA0005G03020'
),
'scp' => array(
(int) 0 => 'SPBC365.08c',
(int) 1 => 'SPAC1687.17c'
),
'sac' => array(
(int) 0 => 'YDR411C'
)
),
'gene_id' => 'ENSMUSG00000022365',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000022365',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'SPAC6G9.04',
'gf_placeholder' => 'HOM03P007977',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000022365' => array(
'gene_id' => 'ENSMUSG00000022365',
'e_value' => '2e-180',
'bit_score' => '503',
'alignment_length' => '252',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'WBGene00000843' => array(
'gene_id' => 'WBGene00000843',
'e_value' => '8e-71',
'bit_score' => '224',
'alignment_length' => '252',
'identity_percentage' => '47.62',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'FBgn0031376' => array(
'gene_id' => 'FBgn0031376',
'e_value' => '6e-61',
'bit_score' => '199',
'alignment_length' => '250',
'identity_percentage' => '42.40',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'PI00G03570' => array(
'gene_id' => 'PI00G03570',
'e_value' => '4e-33',
'bit_score' => '125',
'alignment_length' => '221',
'identity_percentage' => '33.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'RCC4223.05g04730' => array(
'gene_id' => 'RCC4223.05g04730',
'e_value' => '4e-32',
'bit_score' => '123',
'alignment_length' => '224',
'identity_percentage' => '31.70',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ORCC809_13G00520' => array(
'gene_id' => 'ORCC809_13G00520',
'e_value' => '1e-31',
'bit_score' => '122',
'alignment_length' => '238',
'identity_percentage' => '31.93',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ENSG00000099958' => array(
'gene_id' => 'ENSG00000099958',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ENSG00000274437' => array(
'gene_id' => 'ENSG00000274437',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OS05G09550' => array(
'gene_id' => 'OS05G09550',
'e_value' => '2e-30',
'bit_score' => '119',
'alignment_length' => '255',
'identity_percentage' => '29.80',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ENSMUSG00000009092' => array(
'gene_id' => 'ENSMUSG00000009092',
'e_value' => '7e-30',
'bit_score' => '117',
'alignment_length' => '199',
'identity_percentage' => '34.67',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'phs171120' => array(
'gene_id' => 'phs171120',
'e_value' => '8e-30',
'bit_score' => '117',
'alignment_length' => '253',
'identity_percentage' => '33.20',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'HE0000G24210' => array(
'gene_id' => 'HE0000G24210',
'e_value' => '1e-29',
'bit_score' => '117',
'alignment_length' => '243',
'identity_percentage' => '31.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OS03G63520' => array(
'gene_id' => 'OS03G63520',
'e_value' => '2e-29',
'bit_score' => '117',
'alignment_length' => '216',
'identity_percentage' => '34.26',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OM_08G01820' => array(
'gene_id' => 'OM_08G01820',
'e_value' => '1e-28',
'bit_score' => '114',
'alignment_length' => '255',
'identity_percentage' => '29.02',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OL21G00500' => array(
'gene_id' => 'OL21G00500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OL13G02500' => array(
'gene_id' => 'OL13G02500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'AT4G21810' => array(
'gene_id' => 'AT4G21810',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '216',
'identity_percentage' => '33.80',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'DDB_G0288833' => array(
'gene_id' => 'DDB_G0288833',
'e_value' => '3e-28',
'bit_score' => '113',
'alignment_length' => '250',
'identity_percentage' => '32.40',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'CNC64A_002G04430' => array(
'gene_id' => 'CNC64A_002G04430',
'e_value' => '9e-28',
'bit_score' => '112',
'alignment_length' => '212',
'identity_percentage' => '33.96',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PP00068G01090' => array(
'gene_id' => 'PP00068G01090',
'e_value' => '1e-27',
'bit_score' => '111',
'alignment_length' => '219',
'identity_percentage' => '34.25',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'BPRRCC1105_04G02020' => array(
'gene_id' => 'BPRRCC1105_04G02020',
'e_value' => '1e-27',
'bit_score' => '112',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'FBgn0038438' => array(
'gene_id' => 'FBgn0038438',
'e_value' => '2e-27',
'bit_score' => '111',
'alignment_length' => '209',
'identity_percentage' => '32.54',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CV00G18770' => array(
'gene_id' => 'CV00G18770',
'e_value' => '2e-27',
'bit_score' => '110',
'alignment_length' => '250',
'identity_percentage' => '33.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ATR_00062G00960' => array(
'gene_id' => 'ATR_00062G00960',
'e_value' => '3e-27',
'bit_score' => '110',
'alignment_length' => '241',
'identity_percentage' => '32.78',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'AT4G29330' => array(
'gene_id' => 'AT4G29330',
'e_value' => '4e-27',
'bit_score' => '110',
'alignment_length' => '231',
'identity_percentage' => '29.87',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'AT4G04860' => array(
'gene_id' => 'AT4G04860',
'e_value' => '5e-27',
'bit_score' => '110',
'alignment_length' => '216',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PTI_12G00180' => array(
'gene_id' => 'PTI_12G00180',
'e_value' => '7e-27',
'bit_score' => '109',
'alignment_length' => '221',
'identity_percentage' => '34.84',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PP00226G00370' => array(
'gene_id' => 'PP00226G00370',
'e_value' => '8e-27',
'bit_score' => '109',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'AP00G18340' => array(
'gene_id' => 'AP00G18340',
'e_value' => '9e-27',
'bit_score' => '108',
'alignment_length' => '212',
'identity_percentage' => '31.60',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'MRCC299_06G02830' => array(
'gene_id' => 'MRCC299_06G02830',
'e_value' => '3e-26',
'bit_score' => '108',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'DDB_G0285131' => array(
'gene_id' => 'DDB_G0285131',
'e_value' => '5e-26',
'bit_score' => '107',
'alignment_length' => '208',
'identity_percentage' => '31.73',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'FC027G02270' => array(
'gene_id' => 'FC027G02270',
'e_value' => '1e-25',
'bit_score' => '105',
'alignment_length' => '194',
'identity_percentage' => '35.57',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'gsu16030' => array(
'gene_id' => 'gsu16030',
'e_value' => '3e-25',
'bit_score' => '104',
'alignment_length' => '195',
'identity_percentage' => '36.41',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OT_13G02650' => array(
'gene_id' => 'OT_13G02650',
'e_value' => '4e-25',
'bit_score' => '104',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'Naga_100030g4' => array(
'gene_id' => 'Naga_100030g4',
'e_value' => '1e-24',
'bit_score' => '104',
'alignment_length' => '206',
'identity_percentage' => '33.50',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'CV00G63120' => array(
'gene_id' => 'CV00G63120',
'e_value' => '2e-24',
'bit_score' => '102',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'MP09G02920' => array(
'gene_id' => 'MP09G02920',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '216',
'identity_percentage' => '31.48',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CV00G18750' => array(
'gene_id' => 'CV00G18750',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '250',
'identity_percentage' => '31.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'WBGene00020109' => array(
'gene_id' => 'WBGene00020109',
'e_value' => '6e-24',
'bit_score' => '101',
'alignment_length' => '214',
'identity_percentage' => '29.91',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'TP06G07000' => array(
'gene_id' => 'TP06G07000',
'e_value' => '1e-23',
'bit_score' => '100',
'alignment_length' => '209',
'identity_percentage' => '32.06',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'emh750850' => array(
'gene_id' => 'emh750850',
'e_value' => '2e-23',
'bit_score' => '99.8',
'alignment_length' => '244',
'identity_percentage' => '29.10',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'PTI_13G02740' => array(
'gene_id' => 'PTI_13G02740',
'e_value' => '3e-23',
'bit_score' => '100',
'alignment_length' => '246',
'identity_percentage' => '31.71',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'CM09G01590' => array(
'gene_id' => 'CM09G01590',
'e_value' => '4e-23',
'bit_score' => '99.8',
'alignment_length' => '271',
'identity_percentage' => '29.52',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'VC00G105800' => array(
'gene_id' => 'VC00G105800',
'e_value' => '6e-23',
'bit_score' => '99.0',
'alignment_length' => '210',
'identity_percentage' => '30.48',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'Naga_100004g172' => array(
'gene_id' => 'Naga_100004g172',
'e_value' => '9e-23',
'bit_score' => '99.4',
'alignment_length' => '208',
'identity_percentage' => '31.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CR12G08730' => array(
'gene_id' => 'CR12G08730',
'e_value' => '9e-23',
'bit_score' => '98.2',
'alignment_length' => '217',
'identity_percentage' => '31.80',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'BPRRCC1105_07G00150' => array(
'gene_id' => 'BPRRCC1105_07G00150',
'e_value' => '1e-22',
'bit_score' => '98.2',
'alignment_length' => '249',
'identity_percentage' => '29.32',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'emh659390' => array(
'gene_id' => 'emh659390',
'e_value' => '1e-22',
'bit_score' => '97.4',
'alignment_length' => '245',
'identity_percentage' => '31.84',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ES0334G00070' => array(
'gene_id' => 'ES0334G00070',
'e_value' => '2e-22',
'bit_score' => '97.4',
'alignment_length' => '191',
'identity_percentage' => '32.98',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'pte104470' => array(
'gene_id' => 'pte104470',
'e_value' => '2e-22',
'bit_score' => '97.1',
'alignment_length' => '200',
'identity_percentage' => '32.00',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'MP01G00760' => array(
'gene_id' => 'MP01G00760',
'e_value' => '4e-22',
'bit_score' => '96.7',
'alignment_length' => '222',
'identity_percentage' => '30.63',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ES0180G00150' => array(
'gene_id' => 'ES0180G00150',
'e_value' => '8e-22',
'bit_score' => '96.3',
'alignment_length' => '218',
'identity_percentage' => '34.40',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'AC00G11450' => array(
'gene_id' => 'AC00G11450',
'e_value' => '9e-22',
'bit_score' => '95.9',
'alignment_length' => '219',
'identity_percentage' => '30.14',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'gsu96750' => array(
'gene_id' => 'gsu96750',
'e_value' => '1e-21',
'bit_score' => '95.1',
'alignment_length' => '260',
'identity_percentage' => '31.54',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'phs173810' => array(
'gene_id' => 'phs173810',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '225',
'identity_percentage' => '28.89',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'VC00G131550' => array(
'gene_id' => 'VC00G131550',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ATR_00056G01300' => array(
'gene_id' => 'ATR_00056G01300',
'e_value' => '7e-21',
'bit_score' => '92.8',
'alignment_length' => '207',
'identity_percentage' => '30.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'AA0023G00650' => array(
'gene_id' => 'AA0023G00650',
'e_value' => '2e-20',
'bit_score' => '90.5',
'alignment_length' => '185',
'identity_percentage' => '30.81',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PP00213G00320' => array(
'gene_id' => 'PP00213G00320',
'e_value' => '2e-20',
'bit_score' => '91.7',
'alignment_length' => '216',
'identity_percentage' => '29.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'OT_03G06050' => array(
'gene_id' => 'OT_03G06050',
'e_value' => '4e-20',
'bit_score' => '90.5',
'alignment_length' => '260',
'identity_percentage' => '29.62',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'OM_07G04780' => array(
'gene_id' => 'OM_07G04780',
'e_value' => '1e-19',
'bit_score' => '89.4',
'alignment_length' => '258',
'identity_percentage' => '28.29',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'TP06G04610' => array(
'gene_id' => 'TP06G04610',
'e_value' => '1e-19',
'bit_score' => '88.2',
'alignment_length' => '212',
'identity_percentage' => '32.55',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'MRCC299_01G00860' => array(
'gene_id' => 'MRCC299_01G00860',
'e_value' => '2e-19',
'bit_score' => '88.6',
'alignment_length' => '241',
'identity_percentage' => '27.80',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'Naga_100052g22' => array(
'gene_id' => 'Naga_100052g22',
'e_value' => '4e-19',
'bit_score' => '89.0',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016177'
)
),
'CM11G01620' => array(
'gene_id' => 'CM11G01620',
'e_value' => '5e-19',
'bit_score' => '87.0',
'alignment_length' => '205',
'identity_percentage' => '33.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CR15G00540' => array(
'gene_id' => 'CR15G00540',
'e_value' => '1e-18',
'bit_score' => '86.7',
'alignment_length' => '199',
'identity_percentage' => '31.16',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ORCC809_06G06880' => array(
'gene_id' => 'ORCC809_06G06880',
'e_value' => '2e-17',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '29.81',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'pte422770' => array(
'gene_id' => 'pte422770',
'e_value' => '2e-16',
'bit_score' => '79.3',
'alignment_length' => '204',
'identity_percentage' => '30.39',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'SPBC365.08c' => array(
'gene_id' => 'SPBC365.08c',
'e_value' => '2e-15',
'bit_score' => '76.6',
'alignment_length' => '170',
'identity_percentage' => '31.18',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'pte33160' => array(
'gene_id' => 'pte33160',
'e_value' => '3e-15',
'bit_score' => '76.3',
'alignment_length' => '207',
'identity_percentage' => '28.02',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P044322'
)
),
'emh645640' => array(
'gene_id' => 'emh645640',
'e_value' => '1e-14',
'bit_score' => '73.6',
'alignment_length' => '187',
'identity_percentage' => '28.34',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OL03G05850' => array(
'gene_id' => 'OL03G05850',
'e_value' => '2e-14',
'bit_score' => '73.6',
'alignment_length' => '206',
'identity_percentage' => '29.61',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'RCC4223.04g01340' => array(
'gene_id' => 'RCC4223.04g01340',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '257',
'identity_percentage' => '30.35',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
),
'pte656850' => array(
'gene_id' => 'pte656850',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '189',
'identity_percentage' => '27.51',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P044322'
)
),
'pte37960' => array(
'gene_id' => 'pte37960',
'e_value' => '2e-12',
'bit_score' => '66.6',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PI00G24270' => array(
'gene_id' => 'PI00G24270',
'e_value' => '7e-12',
'bit_score' => '67.0',
'alignment_length' => '258',
'identity_percentage' => '29.07',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
),
'CNC64A_167G00010' => array(
'gene_id' => 'CNC64A_167G00010',
'e_value' => '1e-11',
'bit_score' => '65.9',
'alignment_length' => '249',
'identity_percentage' => '27.71',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
),
'FC012G02490' => array(
'gene_id' => 'FC012G02490',
'e_value' => '6e-11',
'bit_score' => '64.7',
'alignment_length' => '194',
'identity_percentage' => '32.47',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'Naga_100786g2' => array(
'gene_id' => 'Naga_100786g2',
'e_value' => '6e-10',
'bit_score' => '62.8',
'alignment_length' => '219',
'identity_percentage' => '27.40',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'AC00G88370' => array(
'gene_id' => 'AC00G88370',
'e_value' => '6e-10',
'bit_score' => '60.8',
'alignment_length' => '202',
'identity_percentage' => '28.71',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'TP04G07930' => array(
'gene_id' => 'TP04G07930',
'e_value' => '1e-09',
'bit_score' => '58.9',
'alignment_length' => '165',
'identity_percentage' => '29.70',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'FC007G04730' => array(
'gene_id' => 'FC007G04730',
'e_value' => '2e-09',
'bit_score' => '59.3',
'alignment_length' => '223',
'identity_percentage' => '29.15',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P209387'
)
),
'FC001G09060' => array(
'gene_id' => 'FC001G09060',
'e_value' => '3e-09',
'bit_score' => '58.9',
'alignment_length' => '187',
'identity_percentage' => '24.06',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'FC004G05820' => array(
'gene_id' => 'FC004G05820',
'e_value' => '1e-08',
'bit_score' => '58.5',
'alignment_length' => '209',
'identity_percentage' => '25.84',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016177'
)
),
'ES0149G00240' => array(
'gene_id' => 'ES0149G00240',
'e_value' => '3e-08',
'bit_score' => '57.8',
'alignment_length' => '165',
'identity_percentage' => '28.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016177'
)
),
'emh724700' => array(
'gene_id' => 'emh724700',
'e_value' => '3e-07',
'bit_score' => '54.7',
'alignment_length' => '179',
'identity_percentage' => '24.58',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P077563'
)
),
'SPAC1687.17c' => array(
'gene_id' => 'SPAC1687.17c',
'e_value' => '3e-07',
'bit_score' => '53.1',
'alignment_length' => '187',
'identity_percentage' => '26.20',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PTI_09G00960' => array(
'gene_id' => 'PTI_09G00960',
'e_value' => '4e-07',
'bit_score' => '53.9',
'alignment_length' => '184',
'identity_percentage' => '26.63',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'TP15G00800' => array(
'gene_id' => 'TP15G00800',
'e_value' => '6e-07',
'bit_score' => '53.5',
'alignment_length' => '257',
'identity_percentage' => '25.68',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P140795'
)
),
'YDR411C' => array(
'gene_id' => 'YDR411C',
'e_value' => '9e-07',
'bit_score' => '53.1',
'alignment_length' => '195',
'identity_percentage' => '27.18',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'AA0005G03020' => array(
'gene_id' => 'AA0005G03020',
'e_value' => '1e-06',
'bit_score' => '50.1',
'alignment_length' => '98',
'identity_percentage' => '35.71',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'HE0000G41290' => array(
'gene_id' => 'HE0000G41290',
'e_value' => '2e-06',
'bit_score' => '49.7',
'alignment_length' => '88',
'identity_percentage' => '29.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000022365',
(int) 1 => 'ENSMUSG00000009092'
),
'cel' => array(
(int) 0 => 'WBGene00000843',
(int) 1 => 'WBGene00020109'
),
'drm' => array(
(int) 0 => 'FBgn0031376',
(int) 1 => 'FBgn0038438'
),
'pse3' => array(
(int) 0 => 'PI00G03570',
(int) 1 => 'PI00G24270'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.05g04730',
(int) 1 => 'RCC4223.04g01340'
),
'orcc809' => array(
(int) 0 => 'ORCC809_13G00520',
(int) 1 => 'ORCC809_06G06880'
),
'hom' => array(
(int) 0 => 'ENSG00000099958',
(int) 1 => 'ENSG00000274437'
),
'osa' => array(
(int) 0 => 'OS05G09550',
(int) 1 => 'OS03G63520'
),
'phs' => array(
(int) 0 => 'phs171120',
(int) 1 => 'phs173810'
),
'hsp' => array(
(int) 0 => 'HE0000G24210',
(int) 1 => 'HE0000G41290'
),
'ome' => array(
(int) 0 => 'OM_08G01820',
(int) 1 => 'OM_07G04780'
),
'olu' => array(
(int) 0 => 'OL21G00500',
(int) 1 => 'OL13G02500',
(int) 2 => 'OL03G05850'
),
'ath' => array(
(int) 0 => 'AT4G21810',
(int) 1 => 'AT4G29330',
(int) 2 => 'AT4G04860'
),
'ddi' => array(
(int) 0 => 'DDB_G0288833',
(int) 1 => 'DDB_G0285131'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_002G04430'
),
'ppa' => array(
(int) 0 => 'PP00068G01090',
(int) 1 => 'PP00226G00370',
(int) 2 => 'PP00213G00320'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_04G02020',
(int) 1 => 'BPRRCC1105_07G00150'
),
'cvu' => array(
(int) 0 => 'CV00G18770',
(int) 1 => 'CV00G63120',
(int) 2 => 'CV00G18750'
),
'atr' => array(
(int) 0 => 'ATR_00062G00960',
(int) 1 => 'ATR_00056G01300'
),
'ptri' => array(
(int) 0 => 'PTI_12G00180',
(int) 1 => 'PTI_13G02740',
(int) 2 => 'PTI_09G00960'
),
'apr' => array(
(int) 0 => 'AP00G18340'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_06G02830',
(int) 1 => 'MRCC299_01G00860'
),
'fcy' => array(
(int) 0 => 'FC027G02270',
(int) 1 => 'FC012G02490',
(int) 2 => 'FC007G04730',
(int) 3 => 'FC001G09060',
(int) 4 => 'FC004G05820'
),
'gsu' => array(
(int) 0 => 'gsu16030',
(int) 1 => 'gsu96750'
),
'ota' => array(
(int) 0 => 'OT_13G02650',
(int) 1 => 'OT_03G06050'
),
'nga' => array(
(int) 0 => 'Naga_100030g4',
(int) 1 => 'Naga_100004g172',
(int) 2 => 'Naga_100052g22',
(int) 3 => 'Naga_100786g2'
),
'mpu' => array(
(int) 0 => 'MP09G02920',
(int) 1 => 'MP01G00760'
),
'tps' => array(
(int) 0 => 'TP06G07000',
(int) 1 => 'TP06G04610',
(int) 2 => 'TP04G07930',
(int) 3 => 'TP15G00800'
),
'emh' => array(
(int) 0 => 'emh750850',
(int) 1 => 'emh659390',
(int) 2 => 'emh645640',
(int) 3 => 'emh724700'
),
'cme' => array(
(int) 0 => 'CM09G01590',
(int) 1 => 'CM11G01620'
),
'vca' => array(
(int) 0 => 'VC00G105800',
(int) 1 => 'VC00G131550'
),
'cre' => array(
(int) 0 => 'CR12G08730',
(int) 1 => 'CR15G00540'
),
'esi' => array(
(int) 0 => 'ES0334G00070',
(int) 1 => 'ES0180G00150',
(int) 2 => 'ES0149G00240'
),
'pte' => array(
(int) 0 => 'pte104470',
(int) 1 => 'pte422770',
(int) 2 => 'pte33160',
(int) 3 => 'pte656850',
(int) 4 => 'pte37960'
),
'acg' => array(
(int) 0 => 'AC00G11450',
(int) 1 => 'AC00G88370'
),
'aan' => array(
(int) 0 => 'AA0023G00650',
(int) 1 => 'AA0005G03020'
),
'scp' => array(
(int) 0 => 'SPBC365.08c',
(int) 1 => 'SPAC1687.17c'
),
'sac' => array(
(int) 0 => 'YDR411C'
)
)
$gene_id = 'ENSMUSG00000022365'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000022365'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'SPAC6G9.04'
$gf_placeholder = 'HOM03P007977'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_167G00010',
'e_value' => '1e-11',
'bit_score' => '65.9',
'alignment_length' => '249',
'identity_percentage' => '27.71',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_167G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000022365' => array(
'gene_id' => 'ENSMUSG00000022365',
'e_value' => '2e-180',
'bit_score' => '503',
'alignment_length' => '252',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00000843' => array(
'gene_id' => 'WBGene00000843',
'e_value' => '8e-71',
'bit_score' => '224',
'alignment_length' => '252',
'identity_percentage' => '47.62',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0031376' => array(
'gene_id' => 'FBgn0031376',
'e_value' => '6e-61',
'bit_score' => '199',
'alignment_length' => '250',
'identity_percentage' => '42.40',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'PI00G03570' => array(
'gene_id' => 'PI00G03570',
'e_value' => '4e-33',
'bit_score' => '125',
'alignment_length' => '221',
'identity_percentage' => '33.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.05g04730' => array(
'gene_id' => 'RCC4223.05g04730',
'e_value' => '4e-32',
'bit_score' => '123',
'alignment_length' => '224',
'identity_percentage' => '31.70',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_13G00520' => array(
'gene_id' => 'ORCC809_13G00520',
'e_value' => '1e-31',
'bit_score' => '122',
'alignment_length' => '238',
'identity_percentage' => '31.93',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000099958' => array(
'gene_id' => 'ENSG00000099958',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000274437' => array(
'gene_id' => 'ENSG00000274437',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'OS05G09550' => array(
'gene_id' => 'OS05G09550',
'e_value' => '2e-30',
'bit_score' => '119',
'alignment_length' => '255',
'identity_percentage' => '29.80',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000009092' => array(
'gene_id' => 'ENSMUSG00000009092',
'e_value' => '7e-30',
'bit_score' => '117',
'alignment_length' => '199',
'identity_percentage' => '34.67',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'phs171120' => array(
'gene_id' => 'phs171120',
'e_value' => '8e-30',
'bit_score' => '117',
'alignment_length' => '253',
'identity_percentage' => '33.20',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G24210' => array(
'gene_id' => 'HE0000G24210',
'e_value' => '1e-29',
'bit_score' => '117',
'alignment_length' => '243',
'identity_percentage' => '31.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OS03G63520' => array(
'gene_id' => 'OS03G63520',
'e_value' => '2e-29',
'bit_score' => '117',
'alignment_length' => '216',
'identity_percentage' => '34.26',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OM_08G01820' => array(
'gene_id' => 'OM_08G01820',
'e_value' => '1e-28',
'bit_score' => '114',
'alignment_length' => '255',
'identity_percentage' => '29.02',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'OL21G00500' => array(
'gene_id' => 'OL21G00500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OL13G02500' => array(
'gene_id' => 'OL13G02500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'AT4G21810' => array(
'gene_id' => 'AT4G21810',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '216',
'identity_percentage' => '33.80',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0288833' => array(
'gene_id' => 'DDB_G0288833',
'e_value' => '3e-28',
'bit_score' => '113',
'alignment_length' => '250',
'identity_percentage' => '32.40',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_002G04430' => array(
'gene_id' => 'CNC64A_002G04430',
'e_value' => '9e-28',
'bit_score' => '112',
'alignment_length' => '212',
'identity_percentage' => '33.96',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'PP00068G01090' => array(
'gene_id' => 'PP00068G01090',
'e_value' => '1e-27',
'bit_score' => '111',
'alignment_length' => '219',
'identity_percentage' => '34.25',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_04G02020' => array(
'gene_id' => 'BPRRCC1105_04G02020',
'e_value' => '1e-27',
'bit_score' => '112',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0038438' => array(
'gene_id' => 'FBgn0038438',
'e_value' => '2e-27',
'bit_score' => '111',
'alignment_length' => '209',
'identity_percentage' => '32.54',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'CV00G18770' => array(
'gene_id' => 'CV00G18770',
'e_value' => '2e-27',
'bit_score' => '110',
'alignment_length' => '250',
'identity_percentage' => '33.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00062G00960' => array(
'gene_id' => 'ATR_00062G00960',
'e_value' => '3e-27',
'bit_score' => '110',
'alignment_length' => '241',
'identity_percentage' => '32.78',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT4G29330' => array(
'gene_id' => 'AT4G29330',
'e_value' => '4e-27',
'bit_score' => '110',
'alignment_length' => '231',
'identity_percentage' => '29.87',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G04860' => array(
'gene_id' => 'AT4G04860',
'e_value' => '5e-27',
'bit_score' => '110',
'alignment_length' => '216',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PTI_12G00180' => array(
'gene_id' => 'PTI_12G00180',
'e_value' => '7e-27',
'bit_score' => '109',
'alignment_length' => '221',
'identity_percentage' => '34.84',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'PP00226G00370' => array(
'gene_id' => 'PP00226G00370',
'e_value' => '8e-27',
'bit_score' => '109',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G18340' => array(
'gene_id' => 'AP00G18340',
'e_value' => '9e-27',
'bit_score' => '108',
'alignment_length' => '212',
'identity_percentage' => '31.60',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_06G02830' => array(
'gene_id' => 'MRCC299_06G02830',
'e_value' => '3e-26',
'bit_score' => '108',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0285131' => array(
'gene_id' => 'DDB_G0285131',
'e_value' => '5e-26',
'bit_score' => '107',
'alignment_length' => '208',
'identity_percentage' => '31.73',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'FC027G02270' => array(
'gene_id' => 'FC027G02270',
'e_value' => '1e-25',
'bit_score' => '105',
'alignment_length' => '194',
'identity_percentage' => '35.57',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'gsu16030' => array(
'gene_id' => 'gsu16030',
'e_value' => '3e-25',
'bit_score' => '104',
'alignment_length' => '195',
'identity_percentage' => '36.41',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'OT_13G02650' => array(
'gene_id' => 'OT_13G02650',
'e_value' => '4e-25',
'bit_score' => '104',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100030g4' => array(
'gene_id' => 'Naga_100030g4',
'e_value' => '1e-24',
'bit_score' => '104',
'alignment_length' => '206',
'identity_percentage' => '33.50',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G63120' => array(
'gene_id' => 'CV00G63120',
'e_value' => '2e-24',
'bit_score' => '102',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'MP09G02920' => array(
'gene_id' => 'MP09G02920',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '216',
'identity_percentage' => '31.48',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'CV00G18750' => array(
'gene_id' => 'CV00G18750',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '250',
'identity_percentage' => '31.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00020109' => array(
'gene_id' => 'WBGene00020109',
'e_value' => '6e-24',
'bit_score' => '101',
'alignment_length' => '214',
'identity_percentage' => '29.91',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'TP06G07000' => array(
'gene_id' => 'TP06G07000',
'e_value' => '1e-23',
'bit_score' => '100',
'alignment_length' => '209',
'identity_percentage' => '32.06',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'emh750850' => array(
'gene_id' => 'emh750850',
'e_value' => '2e-23',
'bit_score' => '99.8',
'alignment_length' => '244',
'identity_percentage' => '29.10',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'PTI_13G02740' => array(
'gene_id' => 'PTI_13G02740',
'e_value' => '3e-23',
'bit_score' => '100',
'alignment_length' => '246',
'identity_percentage' => '31.71',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'CM09G01590' => array(
'gene_id' => 'CM09G01590',
'e_value' => '4e-23',
'bit_score' => '99.8',
'alignment_length' => '271',
'identity_percentage' => '29.52',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105800' => array(
'gene_id' => 'VC00G105800',
'e_value' => '6e-23',
'bit_score' => '99.0',
'alignment_length' => '210',
'identity_percentage' => '30.48',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100004g172' => array(
'gene_id' => 'Naga_100004g172',
'e_value' => '9e-23',
'bit_score' => '99.4',
'alignment_length' => '208',
'identity_percentage' => '31.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR12G08730' => array(
'gene_id' => 'CR12G08730',
'e_value' => '9e-23',
'bit_score' => '98.2',
'alignment_length' => '217',
'identity_percentage' => '31.80',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_07G00150' => array(
'gene_id' => 'BPRRCC1105_07G00150',
'e_value' => '1e-22',
'bit_score' => '98.2',
'alignment_length' => '249',
'identity_percentage' => '29.32',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'emh659390' => array(
'gene_id' => 'emh659390',
'e_value' => '1e-22',
'bit_score' => '97.4',
'alignment_length' => '245',
'identity_percentage' => '31.84',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ES0334G00070' => array(
'gene_id' => 'ES0334G00070',
'e_value' => '2e-22',
'bit_score' => '97.4',
'alignment_length' => '191',
'identity_percentage' => '32.98',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'pte104470' => array(
'gene_id' => 'pte104470',
'e_value' => '2e-22',
'bit_score' => '97.1',
'alignment_length' => '200',
'identity_percentage' => '32.00',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'MP01G00760' => array(
'gene_id' => 'MP01G00760',
'e_value' => '4e-22',
'bit_score' => '96.7',
'alignment_length' => '222',
'identity_percentage' => '30.63',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'ES0180G00150' => array(
'gene_id' => 'ES0180G00150',
'e_value' => '8e-22',
'bit_score' => '96.3',
'alignment_length' => '218',
'identity_percentage' => '34.40',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11450' => array(
'gene_id' => 'AC00G11450',
'e_value' => '9e-22',
'bit_score' => '95.9',
'alignment_length' => '219',
'identity_percentage' => '30.14',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'gsu96750' => array(
'gene_id' => 'gsu96750',
'e_value' => '1e-21',
'bit_score' => '95.1',
'alignment_length' => '260',
'identity_percentage' => '31.54',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'phs173810' => array(
'gene_id' => 'phs173810',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '225',
'identity_percentage' => '28.89',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G131550' => array(
'gene_id' => 'VC00G131550',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00056G01300' => array(
'gene_id' => 'ATR_00056G01300',
'e_value' => '7e-21',
'bit_score' => '92.8',
'alignment_length' => '207',
'identity_percentage' => '30.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AA0023G00650' => array(
'gene_id' => 'AA0023G00650',
'e_value' => '2e-20',
'bit_score' => '90.5',
'alignment_length' => '185',
'identity_percentage' => '30.81',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'PP00213G00320' => array(
'gene_id' => 'PP00213G00320',
'e_value' => '2e-20',
'bit_score' => '91.7',
'alignment_length' => '216',
'identity_percentage' => '29.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OT_03G06050' => array(
'gene_id' => 'OT_03G06050',
'e_value' => '4e-20',
'bit_score' => '90.5',
'alignment_length' => '260',
'identity_percentage' => '29.62',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'OM_07G04780' => array(
'gene_id' => 'OM_07G04780',
'e_value' => '1e-19',
'bit_score' => '89.4',
'alignment_length' => '258',
'identity_percentage' => '28.29',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'TP06G04610' => array(
'gene_id' => 'TP06G04610',
'e_value' => '1e-19',
'bit_score' => '88.2',
'alignment_length' => '212',
'identity_percentage' => '32.55',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_01G00860' => array(
'gene_id' => 'MRCC299_01G00860',
'e_value' => '2e-19',
'bit_score' => '88.6',
'alignment_length' => '241',
'identity_percentage' => '27.80',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100052g22' => array(
'gene_id' => 'Naga_100052g22',
'e_value' => '4e-19',
'bit_score' => '89.0',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CM11G01620' => array(
'gene_id' => 'CM11G01620',
'e_value' => '5e-19',
'bit_score' => '87.0',
'alignment_length' => '205',
'identity_percentage' => '33.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CR15G00540' => array(
'gene_id' => 'CR15G00540',
'e_value' => '1e-18',
'bit_score' => '86.7',
'alignment_length' => '199',
'identity_percentage' => '31.16',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_06G06880' => array(
'gene_id' => 'ORCC809_06G06880',
'e_value' => '2e-17',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '29.81',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'pte422770' => array(
'gene_id' => 'pte422770',
'e_value' => '2e-16',
'bit_score' => '79.3',
'alignment_length' => '204',
'identity_percentage' => '30.39',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPBC365.08c' => array(
'gene_id' => 'SPBC365.08c',
'e_value' => '2e-15',
'bit_score' => '76.6',
'alignment_length' => '170',
'identity_percentage' => '31.18',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'pte33160' => array(
'gene_id' => 'pte33160',
'e_value' => '3e-15',
'bit_score' => '76.3',
'alignment_length' => '207',
'identity_percentage' => '28.02',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'emh645640' => array(
'gene_id' => 'emh645640',
'e_value' => '1e-14',
'bit_score' => '73.6',
'alignment_length' => '187',
'identity_percentage' => '28.34',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OL03G05850' => array(
'gene_id' => 'OL03G05850',
'e_value' => '2e-14',
'bit_score' => '73.6',
'alignment_length' => '206',
'identity_percentage' => '29.61',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01340' => array(
'gene_id' => 'RCC4223.04g01340',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '257',
'identity_percentage' => '30.35',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'pte656850' => array(
'gene_id' => 'pte656850',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '189',
'identity_percentage' => '27.51',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte37960' => array(
'gene_id' => 'pte37960',
'e_value' => '2e-12',
'bit_score' => '66.6',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PI00G24270' => array(
'gene_id' => 'PI00G24270',
'e_value' => '7e-12',
'bit_score' => '67.0',
'alignment_length' => '258',
'identity_percentage' => '29.07',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_167G00010' => array(
'gene_id' => 'CNC64A_167G00010',
'e_value' => '1e-11',
'bit_score' => '65.9',
'alignment_length' => '249',
'identity_percentage' => '27.71',
'gf' => array(
[maximum depth reached]
)
),
'FC012G02490' => array(
'gene_id' => 'FC012G02490',
'e_value' => '6e-11',
'bit_score' => '64.7',
'alignment_length' => '194',
'identity_percentage' => '32.47',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100786g2' => array(
'gene_id' => 'Naga_100786g2',
'e_value' => '6e-10',
'bit_score' => '62.8',
'alignment_length' => '219',
'identity_percentage' => '27.40',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G88370' => array(
'gene_id' => 'AC00G88370',
'e_value' => '6e-10',
'bit_score' => '60.8',
'alignment_length' => '202',
'identity_percentage' => '28.71',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'TP04G07930' => array(
'gene_id' => 'TP04G07930',
'e_value' => '1e-09',
'bit_score' => '58.9',
'alignment_length' => '165',
'identity_percentage' => '29.70',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'FC007G04730' => array(
'gene_id' => 'FC007G04730',
'e_value' => '2e-09',
'bit_score' => '59.3',
'alignment_length' => '223',
'identity_percentage' => '29.15',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'FC001G09060' => array(
'gene_id' => 'FC001G09060',
'e_value' => '3e-09',
'bit_score' => '58.9',
'alignment_length' => '187',
'identity_percentage' => '24.06',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'FC004G05820' => array(
'gene_id' => 'FC004G05820',
'e_value' => '1e-08',
'bit_score' => '58.5',
'alignment_length' => '209',
'identity_percentage' => '25.84',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'ES0149G00240' => array(
'gene_id' => 'ES0149G00240',
'e_value' => '3e-08',
'bit_score' => '57.8',
'alignment_length' => '165',
'identity_percentage' => '28.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'emh724700' => array(
'gene_id' => 'emh724700',
'e_value' => '3e-07',
'bit_score' => '54.7',
'alignment_length' => '179',
'identity_percentage' => '24.58',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1687.17c' => array(
'gene_id' => 'SPAC1687.17c',
'e_value' => '3e-07',
'bit_score' => '53.1',
'alignment_length' => '187',
'identity_percentage' => '26.20',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'PTI_09G00960' => array(
'gene_id' => 'PTI_09G00960',
'e_value' => '4e-07',
'bit_score' => '53.9',
'alignment_length' => '184',
'identity_percentage' => '26.63',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'TP15G00800' => array(
'gene_id' => 'TP15G00800',
'e_value' => '6e-07',
'bit_score' => '53.5',
'alignment_length' => '257',
'identity_percentage' => '25.68',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'YDR411C' => array(
'gene_id' => 'YDR411C',
'e_value' => '9e-07',
'bit_score' => '53.1',
'alignment_length' => '195',
'identity_percentage' => '27.18',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'AA0005G03020' => array(
'gene_id' => 'AA0005G03020',
'e_value' => '1e-06',
'bit_score' => '50.1',
'alignment_length' => '98',
'identity_percentage' => '35.71',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G41290' => array(
'gene_id' => 'HE0000G41290',
'e_value' => '2e-06',
'bit_score' => '49.7',
'alignment_length' => '88',
'identity_percentage' => '29.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000022365',
(int) 1 => 'ENSMUSG00000009092'
),
'cel' => array(
(int) 0 => 'WBGene00000843',
(int) 1 => 'WBGene00020109'
),
'drm' => array(
(int) 0 => 'FBgn0031376',
(int) 1 => 'FBgn0038438'
),
'pse3' => array(
(int) 0 => 'PI00G03570',
(int) 1 => 'PI00G24270'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.05g04730',
(int) 1 => 'RCC4223.04g01340'
),
'orcc809' => array(
(int) 0 => 'ORCC809_13G00520',
(int) 1 => 'ORCC809_06G06880'
),
'hom' => array(
(int) 0 => 'ENSG00000099958',
(int) 1 => 'ENSG00000274437'
),
'osa' => array(
(int) 0 => 'OS05G09550',
(int) 1 => 'OS03G63520'
),
'phs' => array(
(int) 0 => 'phs171120',
(int) 1 => 'phs173810'
),
'hsp' => array(
(int) 0 => 'HE0000G24210',
(int) 1 => 'HE0000G41290'
),
'ome' => array(
(int) 0 => 'OM_08G01820',
(int) 1 => 'OM_07G04780'
),
'olu' => array(
(int) 0 => 'OL21G00500',
(int) 1 => 'OL13G02500',
(int) 2 => 'OL03G05850'
),
'ath' => array(
(int) 0 => 'AT4G21810',
(int) 1 => 'AT4G29330',
(int) 2 => 'AT4G04860'
),
'ddi' => array(
(int) 0 => 'DDB_G0288833',
(int) 1 => 'DDB_G0285131'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_002G04430'
),
'ppa' => array(
(int) 0 => 'PP00068G01090',
(int) 1 => 'PP00226G00370',
(int) 2 => 'PP00213G00320'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_04G02020',
(int) 1 => 'BPRRCC1105_07G00150'
),
'cvu' => array(
(int) 0 => 'CV00G18770',
(int) 1 => 'CV00G63120',
(int) 2 => 'CV00G18750'
),
'atr' => array(
(int) 0 => 'ATR_00062G00960',
(int) 1 => 'ATR_00056G01300'
),
'ptri' => array(
(int) 0 => 'PTI_12G00180',
(int) 1 => 'PTI_13G02740',
(int) 2 => 'PTI_09G00960'
),
'apr' => array(
(int) 0 => 'AP00G18340'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_06G02830',
(int) 1 => 'MRCC299_01G00860'
),
'fcy' => array(
(int) 0 => 'FC027G02270',
(int) 1 => 'FC012G02490',
(int) 2 => 'FC007G04730',
(int) 3 => 'FC001G09060',
(int) 4 => 'FC004G05820'
),
'gsu' => array(
(int) 0 => 'gsu16030',
(int) 1 => 'gsu96750'
),
'ota' => array(
(int) 0 => 'OT_13G02650',
(int) 1 => 'OT_03G06050'
),
'nga' => array(
(int) 0 => 'Naga_100030g4',
(int) 1 => 'Naga_100004g172',
(int) 2 => 'Naga_100052g22',
(int) 3 => 'Naga_100786g2'
),
'mpu' => array(
(int) 0 => 'MP09G02920',
(int) 1 => 'MP01G00760'
),
'tps' => array(
(int) 0 => 'TP06G07000',
(int) 1 => 'TP06G04610',
(int) 2 => 'TP04G07930',
(int) 3 => 'TP15G00800'
),
'emh' => array(
(int) 0 => 'emh750850',
(int) 1 => 'emh659390',
(int) 2 => 'emh645640',
(int) 3 => 'emh724700'
),
'cme' => array(
(int) 0 => 'CM09G01590',
(int) 1 => 'CM11G01620'
),
'vca' => array(
(int) 0 => 'VC00G105800',
(int) 1 => 'VC00G131550'
),
'cre' => array(
(int) 0 => 'CR12G08730',
(int) 1 => 'CR15G00540'
),
'esi' => array(
(int) 0 => 'ES0334G00070',
(int) 1 => 'ES0180G00150',
(int) 2 => 'ES0149G00240'
),
'pte' => array(
(int) 0 => 'pte104470',
(int) 1 => 'pte422770',
(int) 2 => 'pte33160',
(int) 3 => 'pte656850',
(int) 4 => 'pte37960'
),
'acg' => array(
(int) 0 => 'AC00G11450',
(int) 1 => 'AC00G88370'
),
'aan' => array(
(int) 0 => 'AA0023G00650',
(int) 1 => 'AA0005G03020'
),
'scp' => array(
(int) 0 => 'SPBC365.08c',
(int) 1 => 'SPAC1687.17c'
),
'sac' => array(
(int) 0 => 'YDR411C'
)
),
'gene_id' => 'ENSMUSG00000022365',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000022365',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'SPAC6G9.04',
'gf_placeholder' => 'HOM03P007977',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000022365' => array(
'gene_id' => 'ENSMUSG00000022365',
'e_value' => '2e-180',
'bit_score' => '503',
'alignment_length' => '252',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'WBGene00000843' => array(
'gene_id' => 'WBGene00000843',
'e_value' => '8e-71',
'bit_score' => '224',
'alignment_length' => '252',
'identity_percentage' => '47.62',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'FBgn0031376' => array(
'gene_id' => 'FBgn0031376',
'e_value' => '6e-61',
'bit_score' => '199',
'alignment_length' => '250',
'identity_percentage' => '42.40',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'PI00G03570' => array(
'gene_id' => 'PI00G03570',
'e_value' => '4e-33',
'bit_score' => '125',
'alignment_length' => '221',
'identity_percentage' => '33.48',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'RCC4223.05g04730' => array(
'gene_id' => 'RCC4223.05g04730',
'e_value' => '4e-32',
'bit_score' => '123',
'alignment_length' => '224',
'identity_percentage' => '31.70',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ORCC809_13G00520' => array(
'gene_id' => 'ORCC809_13G00520',
'e_value' => '1e-31',
'bit_score' => '122',
'alignment_length' => '238',
'identity_percentage' => '31.93',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ENSG00000099958' => array(
'gene_id' => 'ENSG00000099958',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ENSG00000274437' => array(
'gene_id' => 'ENSG00000274437',
'e_value' => '1e-30',
'bit_score' => '119',
'alignment_length' => '237',
'identity_percentage' => '32.91',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OS05G09550' => array(
'gene_id' => 'OS05G09550',
'e_value' => '2e-30',
'bit_score' => '119',
'alignment_length' => '255',
'identity_percentage' => '29.80',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ENSMUSG00000009092' => array(
'gene_id' => 'ENSMUSG00000009092',
'e_value' => '7e-30',
'bit_score' => '117',
'alignment_length' => '199',
'identity_percentage' => '34.67',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'phs171120' => array(
'gene_id' => 'phs171120',
'e_value' => '8e-30',
'bit_score' => '117',
'alignment_length' => '253',
'identity_percentage' => '33.20',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'HE0000G24210' => array(
'gene_id' => 'HE0000G24210',
'e_value' => '1e-29',
'bit_score' => '117',
'alignment_length' => '243',
'identity_percentage' => '31.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OS03G63520' => array(
'gene_id' => 'OS03G63520',
'e_value' => '2e-29',
'bit_score' => '117',
'alignment_length' => '216',
'identity_percentage' => '34.26',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OM_08G01820' => array(
'gene_id' => 'OM_08G01820',
'e_value' => '1e-28',
'bit_score' => '114',
'alignment_length' => '255',
'identity_percentage' => '29.02',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OL21G00500' => array(
'gene_id' => 'OL21G00500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OL13G02500' => array(
'gene_id' => 'OL13G02500',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '221',
'identity_percentage' => '31.67',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'AT4G21810' => array(
'gene_id' => 'AT4G21810',
'e_value' => '2e-28',
'bit_score' => '113',
'alignment_length' => '216',
'identity_percentage' => '33.80',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'DDB_G0288833' => array(
'gene_id' => 'DDB_G0288833',
'e_value' => '3e-28',
'bit_score' => '113',
'alignment_length' => '250',
'identity_percentage' => '32.40',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'CNC64A_002G04430' => array(
'gene_id' => 'CNC64A_002G04430',
'e_value' => '9e-28',
'bit_score' => '112',
'alignment_length' => '212',
'identity_percentage' => '33.96',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PP00068G01090' => array(
'gene_id' => 'PP00068G01090',
'e_value' => '1e-27',
'bit_score' => '111',
'alignment_length' => '219',
'identity_percentage' => '34.25',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'BPRRCC1105_04G02020' => array(
'gene_id' => 'BPRRCC1105_04G02020',
'e_value' => '1e-27',
'bit_score' => '112',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'FBgn0038438' => array(
'gene_id' => 'FBgn0038438',
'e_value' => '2e-27',
'bit_score' => '111',
'alignment_length' => '209',
'identity_percentage' => '32.54',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CV00G18770' => array(
'gene_id' => 'CV00G18770',
'e_value' => '2e-27',
'bit_score' => '110',
'alignment_length' => '250',
'identity_percentage' => '33.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ATR_00062G00960' => array(
'gene_id' => 'ATR_00062G00960',
'e_value' => '3e-27',
'bit_score' => '110',
'alignment_length' => '241',
'identity_percentage' => '32.78',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'AT4G29330' => array(
'gene_id' => 'AT4G29330',
'e_value' => '4e-27',
'bit_score' => '110',
'alignment_length' => '231',
'identity_percentage' => '29.87',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'AT4G04860' => array(
'gene_id' => 'AT4G04860',
'e_value' => '5e-27',
'bit_score' => '110',
'alignment_length' => '216',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PTI_12G00180' => array(
'gene_id' => 'PTI_12G00180',
'e_value' => '7e-27',
'bit_score' => '109',
'alignment_length' => '221',
'identity_percentage' => '34.84',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PP00226G00370' => array(
'gene_id' => 'PP00226G00370',
'e_value' => '8e-27',
'bit_score' => '109',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'AP00G18340' => array(
'gene_id' => 'AP00G18340',
'e_value' => '9e-27',
'bit_score' => '108',
'alignment_length' => '212',
'identity_percentage' => '31.60',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'MRCC299_06G02830' => array(
'gene_id' => 'MRCC299_06G02830',
'e_value' => '3e-26',
'bit_score' => '108',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'DDB_G0285131' => array(
'gene_id' => 'DDB_G0285131',
'e_value' => '5e-26',
'bit_score' => '107',
'alignment_length' => '208',
'identity_percentage' => '31.73',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'FC027G02270' => array(
'gene_id' => 'FC027G02270',
'e_value' => '1e-25',
'bit_score' => '105',
'alignment_length' => '194',
'identity_percentage' => '35.57',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'gsu16030' => array(
'gene_id' => 'gsu16030',
'e_value' => '3e-25',
'bit_score' => '104',
'alignment_length' => '195',
'identity_percentage' => '36.41',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OT_13G02650' => array(
'gene_id' => 'OT_13G02650',
'e_value' => '4e-25',
'bit_score' => '104',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'Naga_100030g4' => array(
'gene_id' => 'Naga_100030g4',
'e_value' => '1e-24',
'bit_score' => '104',
'alignment_length' => '206',
'identity_percentage' => '33.50',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'CV00G63120' => array(
'gene_id' => 'CV00G63120',
'e_value' => '2e-24',
'bit_score' => '102',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'MP09G02920' => array(
'gene_id' => 'MP09G02920',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '216',
'identity_percentage' => '31.48',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CV00G18750' => array(
'gene_id' => 'CV00G18750',
'e_value' => '3e-24',
'bit_score' => '102',
'alignment_length' => '250',
'identity_percentage' => '31.60',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'WBGene00020109' => array(
'gene_id' => 'WBGene00020109',
'e_value' => '6e-24',
'bit_score' => '101',
'alignment_length' => '214',
'identity_percentage' => '29.91',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'TP06G07000' => array(
'gene_id' => 'TP06G07000',
'e_value' => '1e-23',
'bit_score' => '100',
'alignment_length' => '209',
'identity_percentage' => '32.06',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'emh750850' => array(
'gene_id' => 'emh750850',
'e_value' => '2e-23',
'bit_score' => '99.8',
'alignment_length' => '244',
'identity_percentage' => '29.10',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'PTI_13G02740' => array(
'gene_id' => 'PTI_13G02740',
'e_value' => '3e-23',
'bit_score' => '100',
'alignment_length' => '246',
'identity_percentage' => '31.71',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'CM09G01590' => array(
'gene_id' => 'CM09G01590',
'e_value' => '4e-23',
'bit_score' => '99.8',
'alignment_length' => '271',
'identity_percentage' => '29.52',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'VC00G105800' => array(
'gene_id' => 'VC00G105800',
'e_value' => '6e-23',
'bit_score' => '99.0',
'alignment_length' => '210',
'identity_percentage' => '30.48',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'Naga_100004g172' => array(
'gene_id' => 'Naga_100004g172',
'e_value' => '9e-23',
'bit_score' => '99.4',
'alignment_length' => '208',
'identity_percentage' => '31.25',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CR12G08730' => array(
'gene_id' => 'CR12G08730',
'e_value' => '9e-23',
'bit_score' => '98.2',
'alignment_length' => '217',
'identity_percentage' => '31.80',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'BPRRCC1105_07G00150' => array(
'gene_id' => 'BPRRCC1105_07G00150',
'e_value' => '1e-22',
'bit_score' => '98.2',
'alignment_length' => '249',
'identity_percentage' => '29.32',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'emh659390' => array(
'gene_id' => 'emh659390',
'e_value' => '1e-22',
'bit_score' => '97.4',
'alignment_length' => '245',
'identity_percentage' => '31.84',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ES0334G00070' => array(
'gene_id' => 'ES0334G00070',
'e_value' => '2e-22',
'bit_score' => '97.4',
'alignment_length' => '191',
'identity_percentage' => '32.98',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'pte104470' => array(
'gene_id' => 'pte104470',
'e_value' => '2e-22',
'bit_score' => '97.1',
'alignment_length' => '200',
'identity_percentage' => '32.00',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'MP01G00760' => array(
'gene_id' => 'MP01G00760',
'e_value' => '4e-22',
'bit_score' => '96.7',
'alignment_length' => '222',
'identity_percentage' => '30.63',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ES0180G00150' => array(
'gene_id' => 'ES0180G00150',
'e_value' => '8e-22',
'bit_score' => '96.3',
'alignment_length' => '218',
'identity_percentage' => '34.40',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'AC00G11450' => array(
'gene_id' => 'AC00G11450',
'e_value' => '9e-22',
'bit_score' => '95.9',
'alignment_length' => '219',
'identity_percentage' => '30.14',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'gsu96750' => array(
'gene_id' => 'gsu96750',
'e_value' => '1e-21',
'bit_score' => '95.1',
'alignment_length' => '260',
'identity_percentage' => '31.54',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'phs173810' => array(
'gene_id' => 'phs173810',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '225',
'identity_percentage' => '28.89',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'VC00G131550' => array(
'gene_id' => 'VC00G131550',
'e_value' => '2e-21',
'bit_score' => '94.4',
'alignment_length' => '220',
'identity_percentage' => '33.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'ATR_00056G01300' => array(
'gene_id' => 'ATR_00056G01300',
'e_value' => '7e-21',
'bit_score' => '92.8',
'alignment_length' => '207',
'identity_percentage' => '30.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'AA0023G00650' => array(
'gene_id' => 'AA0023G00650',
'e_value' => '2e-20',
'bit_score' => '90.5',
'alignment_length' => '185',
'identity_percentage' => '30.81',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PP00213G00320' => array(
'gene_id' => 'PP00213G00320',
'e_value' => '2e-20',
'bit_score' => '91.7',
'alignment_length' => '216',
'identity_percentage' => '29.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'OT_03G06050' => array(
'gene_id' => 'OT_03G06050',
'e_value' => '4e-20',
'bit_score' => '90.5',
'alignment_length' => '260',
'identity_percentage' => '29.62',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'OM_07G04780' => array(
'gene_id' => 'OM_07G04780',
'e_value' => '1e-19',
'bit_score' => '89.4',
'alignment_length' => '258',
'identity_percentage' => '28.29',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'TP06G04610' => array(
'gene_id' => 'TP06G04610',
'e_value' => '1e-19',
'bit_score' => '88.2',
'alignment_length' => '212',
'identity_percentage' => '32.55',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'MRCC299_01G00860' => array(
'gene_id' => 'MRCC299_01G00860',
'e_value' => '2e-19',
'bit_score' => '88.6',
'alignment_length' => '241',
'identity_percentage' => '27.80',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'Naga_100052g22' => array(
'gene_id' => 'Naga_100052g22',
'e_value' => '4e-19',
'bit_score' => '89.0',
'alignment_length' => '212',
'identity_percentage' => '30.19',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016177'
)
),
'CM11G01620' => array(
'gene_id' => 'CM11G01620',
'e_value' => '5e-19',
'bit_score' => '87.0',
'alignment_length' => '205',
'identity_percentage' => '33.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'CR15G00540' => array(
'gene_id' => 'CR15G00540',
'e_value' => '1e-18',
'bit_score' => '86.7',
'alignment_length' => '199',
'identity_percentage' => '31.16',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'ORCC809_06G06880' => array(
'gene_id' => 'ORCC809_06G06880',
'e_value' => '2e-17',
'bit_score' => '82.4',
'alignment_length' => '208',
'identity_percentage' => '29.81',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'pte422770' => array(
'gene_id' => 'pte422770',
'e_value' => '2e-16',
'bit_score' => '79.3',
'alignment_length' => '204',
'identity_percentage' => '30.39',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'SPBC365.08c' => array(
'gene_id' => 'SPBC365.08c',
'e_value' => '2e-15',
'bit_score' => '76.6',
'alignment_length' => '170',
'identity_percentage' => '31.18',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016428'
)
),
'pte33160' => array(
'gene_id' => 'pte33160',
'e_value' => '3e-15',
'bit_score' => '76.3',
'alignment_length' => '207',
'identity_percentage' => '28.02',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P044322'
)
),
'emh645640' => array(
'gene_id' => 'emh645640',
'e_value' => '1e-14',
'bit_score' => '73.6',
'alignment_length' => '187',
'identity_percentage' => '28.34',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'OL03G05850' => array(
'gene_id' => 'OL03G05850',
'e_value' => '2e-14',
'bit_score' => '73.6',
'alignment_length' => '206',
'identity_percentage' => '29.61',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'RCC4223.04g01340' => array(
'gene_id' => 'RCC4223.04g01340',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '257',
'identity_percentage' => '30.35',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
),
'pte656850' => array(
'gene_id' => 'pte656850',
'e_value' => '5e-13',
'bit_score' => '70.1',
'alignment_length' => '189',
'identity_percentage' => '27.51',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P044322'
)
),
'pte37960' => array(
'gene_id' => 'pte37960',
'e_value' => '2e-12',
'bit_score' => '66.6',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PI00G24270' => array(
'gene_id' => 'PI00G24270',
'e_value' => '7e-12',
'bit_score' => '67.0',
'alignment_length' => '258',
'identity_percentage' => '29.07',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
),
'CNC64A_167G00010' => array(
'gene_id' => 'CNC64A_167G00010',
'e_value' => '1e-11',
'bit_score' => '65.9',
'alignment_length' => '249',
'identity_percentage' => '27.71',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
),
'FC012G02490' => array(
'gene_id' => 'FC012G02490',
'e_value' => '6e-11',
'bit_score' => '64.7',
'alignment_length' => '194',
'identity_percentage' => '32.47',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'Naga_100786g2' => array(
'gene_id' => 'Naga_100786g2',
'e_value' => '6e-10',
'bit_score' => '62.8',
'alignment_length' => '219',
'identity_percentage' => '27.40',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'AC00G88370' => array(
'gene_id' => 'AC00G88370',
'e_value' => '6e-10',
'bit_score' => '60.8',
'alignment_length' => '202',
'identity_percentage' => '28.71',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'TP04G07930' => array(
'gene_id' => 'TP04G07930',
'e_value' => '1e-09',
'bit_score' => '58.9',
'alignment_length' => '165',
'identity_percentage' => '29.70',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'FC007G04730' => array(
'gene_id' => 'FC007G04730',
'e_value' => '2e-09',
'bit_score' => '59.3',
'alignment_length' => '223',
'identity_percentage' => '29.15',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P209387'
)
),
'FC001G09060' => array(
'gene_id' => 'FC001G09060',
'e_value' => '3e-09',
'bit_score' => '58.9',
'alignment_length' => '187',
'identity_percentage' => '24.06',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'FC004G05820' => array(
'gene_id' => 'FC004G05820',
'e_value' => '1e-08',
'bit_score' => '58.5',
'alignment_length' => '209',
'identity_percentage' => '25.84',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016177'
)
),
'ES0149G00240' => array(
'gene_id' => 'ES0149G00240',
'e_value' => '3e-08',
'bit_score' => '57.8',
'alignment_length' => '165',
'identity_percentage' => '28.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016177'
)
),
'emh724700' => array(
'gene_id' => 'emh724700',
'e_value' => '3e-07',
'bit_score' => '54.7',
'alignment_length' => '179',
'identity_percentage' => '24.58',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P077563'
)
),
'SPAC1687.17c' => array(
'gene_id' => 'SPAC1687.17c',
'e_value' => '3e-07',
'bit_score' => '53.1',
'alignment_length' => '187',
'identity_percentage' => '26.20',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P000668'
)
),
'PTI_09G00960' => array(
'gene_id' => 'PTI_09G00960',
'e_value' => '4e-07',
'bit_score' => '53.9',
'alignment_length' => '184',
'identity_percentage' => '26.63',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P016610'
)
),
'TP15G00800' => array(
'gene_id' => 'TP15G00800',
'e_value' => '6e-07',
'bit_score' => '53.5',
'alignment_length' => '257',
'identity_percentage' => '25.68',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P140795'
)
),
'YDR411C' => array(
'gene_id' => 'YDR411C',
'e_value' => '9e-07',
'bit_score' => '53.1',
'alignment_length' => '195',
'identity_percentage' => '27.18',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P004757'
)
),
'AA0005G03020' => array(
'gene_id' => 'AA0005G03020',
'e_value' => '1e-06',
'bit_score' => '50.1',
'alignment_length' => '98',
'identity_percentage' => '35.71',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P011192'
)
),
'HE0000G41290' => array(
'gene_id' => 'HE0000G41290',
'e_value' => '2e-06',
'bit_score' => '49.7',
'alignment_length' => '88',
'identity_percentage' => '29.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000022365',
(int) 1 => 'ENSMUSG00000009092'
),
'cel' => array(
(int) 0 => 'WBGene00000843',
(int) 1 => 'WBGene00020109'
),
'drm' => array(
(int) 0 => 'FBgn0031376',
(int) 1 => 'FBgn0038438'
),
'pse3' => array(
(int) 0 => 'PI00G03570',
(int) 1 => 'PI00G24270'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.05g04730',
(int) 1 => 'RCC4223.04g01340'
),
'orcc809' => array(
(int) 0 => 'ORCC809_13G00520',
(int) 1 => 'ORCC809_06G06880'
),
'hom' => array(
(int) 0 => 'ENSG00000099958',
(int) 1 => 'ENSG00000274437'
),
'osa' => array(
(int) 0 => 'OS05G09550',
(int) 1 => 'OS03G63520'
),
'phs' => array(
(int) 0 => 'phs171120',
(int) 1 => 'phs173810'
),
'hsp' => array(
(int) 0 => 'HE0000G24210',
(int) 1 => 'HE0000G41290'
),
'ome' => array(
(int) 0 => 'OM_08G01820',
(int) 1 => 'OM_07G04780'
),
'olu' => array(
(int) 0 => 'OL21G00500',
(int) 1 => 'OL13G02500',
(int) 2 => 'OL03G05850'
),
'ath' => array(
(int) 0 => 'AT4G21810',
(int) 1 => 'AT4G29330',
(int) 2 => 'AT4G04860'
),
'ddi' => array(
(int) 0 => 'DDB_G0288833',
(int) 1 => 'DDB_G0285131'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_002G04430'
),
'ppa' => array(
(int) 0 => 'PP00068G01090',
(int) 1 => 'PP00226G00370',
(int) 2 => 'PP00213G00320'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_04G02020',
(int) 1 => 'BPRRCC1105_07G00150'
),
'cvu' => array(
(int) 0 => 'CV00G18770',
(int) 1 => 'CV00G63120',
(int) 2 => 'CV00G18750'
),
'atr' => array(
(int) 0 => 'ATR_00062G00960',
(int) 1 => 'ATR_00056G01300'
),
'ptri' => array(
(int) 0 => 'PTI_12G00180',
(int) 1 => 'PTI_13G02740',
(int) 2 => 'PTI_09G00960'
),
'apr' => array(
(int) 0 => 'AP00G18340'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_06G02830',
(int) 1 => 'MRCC299_01G00860'
),
'fcy' => array(
(int) 0 => 'FC027G02270',
(int) 1 => 'FC012G02490',
(int) 2 => 'FC007G04730',
(int) 3 => 'FC001G09060',
(int) 4 => 'FC004G05820'
),
'gsu' => array(
(int) 0 => 'gsu16030',
(int) 1 => 'gsu96750'
),
'ota' => array(
(int) 0 => 'OT_13G02650',
(int) 1 => 'OT_03G06050'
),
'nga' => array(
(int) 0 => 'Naga_100030g4',
(int) 1 => 'Naga_100004g172',
(int) 2 => 'Naga_100052g22',
(int) 3 => 'Naga_100786g2'
),
'mpu' => array(
(int) 0 => 'MP09G02920',
(int) 1 => 'MP01G00760'
),
'tps' => array(
(int) 0 => 'TP06G07000',
(int) 1 => 'TP06G04610',
(int) 2 => 'TP04G07930',
(int) 3 => 'TP15G00800'
),
'emh' => array(
(int) 0 => 'emh750850',
(int) 1 => 'emh659390',
(int) 2 => 'emh645640',
(int) 3 => 'emh724700'
),
'cme' => array(
(int) 0 => 'CM09G01590',
(int) 1 => 'CM11G01620'
),
'vca' => array(
(int) 0 => 'VC00G105800',
(int) 1 => 'VC00G131550'
),
'cre' => array(
(int) 0 => 'CR12G08730',
(int) 1 => 'CR15G00540'
),
'esi' => array(
(int) 0 => 'ES0334G00070',
(int) 1 => 'ES0180G00150',
(int) 2 => 'ES0149G00240'
),
'pte' => array(
(int) 0 => 'pte104470',
(int) 1 => 'pte422770',
(int) 2 => 'pte33160',
(int) 3 => 'pte656850',
(int) 4 => 'pte37960'
),
'acg' => array(
(int) 0 => 'AC00G11450',
(int) 1 => 'AC00G88370'
),
'aan' => array(
(int) 0 => 'AA0023G00650',
(int) 1 => 'AA0005G03020'
),
'scp' => array(
(int) 0 => 'SPBC365.08c',
(int) 1 => 'SPAC1687.17c'
),
'sac' => array(
(int) 0 => 'YDR411C'
)
)
$gene_id = 'ENSMUSG00000022365'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000022365'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'SPAC6G9.04'
$gf_placeholder = 'HOM03P007977'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_167G00010',
'e_value' => '1e-11',
'bit_score' => '65.9',
'alignment_length' => '249',
'identity_percentage' => '27.71',
'gf' => array(
'HOMFAM' => 'HOM03P000487',
'ORTHOFAM' => 'ORTHO03P020594'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_167G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
1e-11 |
65.9 |
249 |
27.71 |
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench