Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]
Code Context
                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'ENSMUSG00000017264' => array(
			'gene_id' => 'ENSMUSG00000017264',
			'e_value' => '0.0',
			'bit_score' => '1846',
			'alignment_length' => '888',
			'identity_percentage' => '100.00',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000171824' => array(
			'gene_id' => 'ENSG00000171824',
			'e_value' => '0.0',
			'bit_score' => '1581',
			'alignment_length' => '888',
			'identity_percentage' => '87.05',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0038269' => array(
			'gene_id' => 'FBgn0038269',
			'e_value' => '1e-146',
			'bit_score' => '463',
			'alignment_length' => '667',
			'identity_percentage' => '40.48',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0271572' => array(
			'gene_id' => 'DDB_G0271572',
			'e_value' => '2e-128',
			'bit_score' => '422',
			'alignment_length' => '565',
			'identity_percentage' => '40.18',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00000796' => array(
			'gene_id' => 'WBGene00000796',
			'e_value' => '2e-101',
			'bit_score' => '342',
			'alignment_length' => '555',
			'identity_percentage' => '36.76',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs78730' => array(
			'gene_id' => 'phs78730',
			'e_value' => '1e-89',
			'bit_score' => '316',
			'alignment_length' => '566',
			'identity_percentage' => '36.75',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00004G00910' => array(
			'gene_id' => 'ATR_00004G00910',
			'e_value' => '2e-87',
			'bit_score' => '305',
			'alignment_length' => '538',
			'identity_percentage' => '36.25',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_12G03110' => array(
			'gene_id' => 'OT_12G03110',
			'e_value' => '4e-87',
			'bit_score' => '300',
			'alignment_length' => '298',
			'identity_percentage' => '48.66',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G06190' => array(
			'gene_id' => 'OS03G06190',
			'e_value' => '5e-87',
			'bit_score' => '296',
			'alignment_length' => '297',
			'identity_percentage' => '50.51',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G35910' => array(
			'gene_id' => 'AT5G35910',
			'e_value' => '3e-86',
			'bit_score' => '300',
			'alignment_length' => '296',
			'identity_percentage' => '51.01',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS10G30100' => array(
			'gene_id' => 'OS10G30100',
			'e_value' => '1e-85',
			'bit_score' => '299',
			'alignment_length' => '265',
			'identity_percentage' => '53.96',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0006G01330' => array(
			'gene_id' => 'ES0006G01330',
			'e_value' => '7e-84',
			'bit_score' => '298',
			'alignment_length' => '619',
			'identity_percentage' => '32.79',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G21430' => array(
			'gene_id' => 'CV00G21430',
			'e_value' => '6e-83',
			'bit_score' => '276',
			'alignment_length' => '388',
			'identity_percentage' => '40.46',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G08400' => array(
			'gene_id' => 'AC00G08400',
			'e_value' => '8e-83',
			'bit_score' => '280',
			'alignment_length' => '448',
			'identity_percentage' => '39.73',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_04G01370' => array(
			'gene_id' => 'MRCC299_04G01370',
			'e_value' => '2e-82',
			'bit_score' => '275',
			'alignment_length' => '331',
			'identity_percentage' => '45.32',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT1G54440' => array(
			'gene_id' => 'AT1G54440',
			'e_value' => '2e-82',
			'bit_score' => '285',
			'alignment_length' => '296',
			'identity_percentage' => '50.34',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh198310' => array(
			'gene_id' => 'emh198310',
			'e_value' => '2e-82',
			'bit_score' => '274',
			'alignment_length' => '253',
			'identity_percentage' => '51.78',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1F3.01' => array(
			'gene_id' => 'SPAC1F3.01',
			'e_value' => '2e-81',
			'bit_score' => '285',
			'alignment_length' => '530',
			'identity_percentage' => '34.34',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_09G04730' => array(
			'gene_id' => 'OM_09G04730',
			'e_value' => '3e-79',
			'bit_score' => '279',
			'alignment_length' => '298',
			'identity_percentage' => '47.65',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YOR001W' => array(
			'gene_id' => 'YOR001W',
			'e_value' => '4e-79',
			'bit_score' => '277',
			'alignment_length' => '577',
			'identity_percentage' => '32.58',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu100550' => array(
			'gene_id' => 'gsu100550',
			'e_value' => '1e-78',
			'bit_score' => '276',
			'alignment_length' => '302',
			'identity_percentage' => '46.03',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_010G01590' => array(
			'gene_id' => 'CNC64A_010G01590',
			'e_value' => '1e-77',
			'bit_score' => '278',
			'alignment_length' => '345',
			'identity_percentage' => '41.16',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.09g02390' => array(
			'gene_id' => 'RCC4223.09g02390',
			'e_value' => '1e-73',
			'bit_score' => '264',
			'alignment_length' => '435',
			'identity_percentage' => '34.25',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_09G04710' => array(
			'gene_id' => 'BPRRCC1105_09G04710',
			'e_value' => '3e-73',
			'bit_score' => '264',
			'alignment_length' => '321',
			'identity_percentage' => '42.99',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G45670' => array(
			'gene_id' => 'PI00G45670',
			'e_value' => '4e-73',
			'bit_score' => '262',
			'alignment_length' => '444',
			'identity_percentage' => '34.23',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr115580' => array(
			'gene_id' => 'ccr115580',
			'e_value' => '2e-68',
			'bit_score' => '250',
			'alignment_length' => '559',
			'identity_percentage' => '31.31',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP12G01380' => array(
			'gene_id' => 'MP12G01380',
			'e_value' => '3e-68',
			'bit_score' => '250',
			'alignment_length' => '309',
			'identity_percentage' => '42.72',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G136800' => array(
			'gene_id' => 'VC00G136800',
			'e_value' => '8e-68',
			'bit_score' => '250',
			'alignment_length' => '546',
			'identity_percentage' => '31.14',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100002g165' => array(
			'gene_id' => 'Naga_100002g165',
			'e_value' => '1e-67',
			'bit_score' => '249',
			'alignment_length' => '598',
			'identity_percentage' => '33.61',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G52550' => array(
			'gene_id' => 'AP00G52550',
			'e_value' => '1e-66',
			'bit_score' => '246',
			'alignment_length' => '283',
			'identity_percentage' => '44.17',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_19G00780' => array(
			'gene_id' => 'PTI_19G00780',
			'e_value' => '6e-65',
			'bit_score' => '240',
			'alignment_length' => '591',
			'identity_percentage' => '32.66',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G02930' => array(
			'gene_id' => 'CR12G02930',
			'e_value' => '5e-64',
			'bit_score' => '238',
			'alignment_length' => '278',
			'identity_percentage' => '43.88',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G13840' => array(
			'gene_id' => 'HE0000G13840',
			'e_value' => '3e-61',
			'bit_score' => '215',
			'alignment_length' => '319',
			'identity_percentage' => '39.50',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte167030' => array(
			'gene_id' => 'pte167030',
			'e_value' => '4e-61',
			'bit_score' => '224',
			'alignment_length' => '313',
			'identity_percentage' => '41.21',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte286970' => array(
			'gene_id' => 'pte286970',
			'e_value' => '3e-60',
			'bit_score' => '222',
			'alignment_length' => '318',
			'identity_percentage' => '40.57',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL12G03160' => array(
			'gene_id' => 'OL12G03160',
			'e_value' => '7e-59',
			'bit_score' => '203',
			'alignment_length' => '164',
			'identity_percentage' => '57.93',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_12G03510' => array(
			'gene_id' => 'ORCC809_12G03510',
			'e_value' => '7e-59',
			'bit_score' => '203',
			'alignment_length' => '164',
			'identity_percentage' => '59.15',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G04220' => array(
			'gene_id' => 'AC00G04220',
			'e_value' => '2e-58',
			'bit_score' => '218',
			'alignment_length' => '334',
			'identity_percentage' => '36.23',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00017G01510' => array(
			'gene_id' => 'PP00017G01510',
			'e_value' => '2e-56',
			'bit_score' => '213',
			'alignment_length' => '344',
			'identity_percentage' => '36.92',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G03180' => array(
			'gene_id' => 'CV00G03180',
			'e_value' => '6e-56',
			'bit_score' => '195',
			'alignment_length' => '165',
			'identity_percentage' => '52.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00037G00830' => array(
			'gene_id' => 'ATR_00037G00830',
			'e_value' => '1e-52',
			'bit_score' => '202',
			'alignment_length' => '350',
			'identity_percentage' => '38.57',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT2G32415' => array(
			'gene_id' => 'AT2G32415',
			'e_value' => '3e-52',
			'bit_score' => '201',
			'alignment_length' => '320',
			'identity_percentage' => '40.00',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS07G32890' => array(
			'gene_id' => 'OS07G32890',
			'e_value' => '1e-51',
			'bit_score' => '199',
			'alignment_length' => '257',
			'identity_percentage' => '41.25',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM06G01770' => array(
			'gene_id' => 'CM06G01770',
			'e_value' => '1e-49',
			'bit_score' => '187',
			'alignment_length' => '269',
			'identity_percentage' => '39.03',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP06G02760' => array(
			'gene_id' => 'TP06G02760',
			'e_value' => '3e-44',
			'bit_score' => '163',
			'alignment_length' => '171',
			'identity_percentage' => '49.71',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G11340' => array(
			'gene_id' => 'FC001G11340',
			'e_value' => '1e-43',
			'bit_score' => '162',
			'alignment_length' => '152',
			'identity_percentage' => '54.61',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_076G00030' => array(
			'gene_id' => 'CNC64A_076G00030',
			'e_value' => '2e-38',
			'bit_score' => '157',
			'alignment_length' => '146',
			'identity_percentage' => '48.63',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0007G02140' => array(
			'gene_id' => 'AA0007G02140',
			'e_value' => '2e-28',
			'bit_score' => '125',
			'alignment_length' => '301',
			'identity_percentage' => '31.56',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G48730' => array(
			'gene_id' => 'VC00G48730',
			'e_value' => '6e-22',
			'bit_score' => '106',
			'alignment_length' => '200',
			'identity_percentage' => '32.50',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR03G01040' => array(
			'gene_id' => 'CR03G01040',
			'e_value' => '9e-20',
			'bit_score' => '99.4',
			'alignment_length' => '125',
			'identity_percentage' => '42.40',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte608240' => array(
			'gene_id' => 'pte608240',
			'e_value' => '9e-19',
			'bit_score' => '95.5',
			'alignment_length' => '200',
			'identity_percentage' => '31.50',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_07G04250' => array(
			'gene_id' => 'PTI_07G04250',
			'e_value' => '2e-16',
			'bit_score' => '88.2',
			'alignment_length' => '147',
			'identity_percentage' => '35.37',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC002G05980' => array(
			'gene_id' => 'FC002G05980',
			'e_value' => '3e-16',
			'bit_score' => '87.0',
			'alignment_length' => '150',
			'identity_percentage' => '34.67',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0228G00130' => array(
			'gene_id' => 'ES0228G00130',
			'e_value' => '2e-14',
			'bit_score' => '77.8',
			'alignment_length' => '115',
			'identity_percentage' => '35.65',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP02G02830' => array(
			'gene_id' => 'TP02G02830',
			'e_value' => '3e-11',
			'bit_score' => '71.6',
			'alignment_length' => '202',
			'identity_percentage' => '30.69',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte388370' => array(
			'gene_id' => 'pte388370',
			'e_value' => '1e-10',
			'bit_score' => '68.9',
			'alignment_length' => '149',
			'identity_percentage' => '34.90',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G48690' => array(
			'gene_id' => 'VC00G48690',
			'e_value' => '4e-10',
			'bit_score' => '67.8',
			'alignment_length' => '135',
			'identity_percentage' => '29.63',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte323930' => array(
			'gene_id' => 'pte323930',
			'e_value' => '5e-09',
			'bit_score' => '63.5',
			'alignment_length' => '151',
			'identity_percentage' => '31.13',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT2G25910' => array(
			'gene_id' => 'AT2G25910',
			'e_value' => '2e-08',
			'bit_score' => '60.8',
			'alignment_length' => '168',
			'identity_percentage' => '29.17',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu32670' => array(
			'gene_id' => 'gsu32670',
			'e_value' => '3e-07',
			'bit_score' => '56.6',
			'alignment_length' => '172',
			'identity_percentage' => '32.56',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00036G00870' => array(
			'gene_id' => 'ATR_00036G00870',
			'e_value' => '4e-07',
			'bit_score' => '57.4',
			'alignment_length' => '168',
			'identity_percentage' => '27.98',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh118640' => array(
			'gene_id' => 'emh118640',
			'e_value' => '4e-06',
			'bit_score' => '54.7',
			'alignment_length' => '119',
			'identity_percentage' => '33.61',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh757610' => array(
			'gene_id' => 'emh757610',
			'e_value' => '4e-06',
			'bit_score' => '54.7',
			'alignment_length' => '119',
			'identity_percentage' => '33.61',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS01G38620' => array(
			'gene_id' => 'OS01G38620',
			'e_value' => '5e-06',
			'bit_score' => '53.5',
			'alignment_length' => '171',
			'identity_percentage' => '26.90',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'mus' => array(
			(int) 0 => 'ENSMUSG00000017264'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000171824'
		),
		'drm' => array(
			(int) 0 => 'FBgn0038269'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0271572'
		),
		'cel' => array(
			(int) 0 => 'WBGene00000796'
		),
		'phs' => array(
			(int) 0 => 'phs78730'
		),
		'atr' => array(
			(int) 0 => 'ATR_00004G00910',
			(int) 1 => 'ATR_00037G00830',
			(int) 2 => 'ATR_00036G00870'
		),
		'ota' => array(
			(int) 0 => 'OT_12G03110'
		),
		'osa' => array(
			(int) 0 => 'OS03G06190',
			(int) 1 => 'OS10G30100',
			(int) 2 => 'OS07G32890',
			(int) 3 => 'OS01G38620'
		),
		'ath' => array(
			(int) 0 => 'AT5G35910',
			(int) 1 => 'AT1G54440',
			(int) 2 => 'AT2G32415',
			(int) 3 => 'AT2G25910'
		),
		'esi' => array(
			(int) 0 => 'ES0006G01330',
			(int) 1 => 'ES0228G00130'
		),
		'cvu' => array(
			(int) 0 => 'CV00G21430',
			(int) 1 => 'CV00G03180'
		),
		'acg' => array(
			(int) 0 => 'AC00G08400',
			(int) 1 => 'AC00G04220'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_04G01370'
		),
		'emh' => array(
			(int) 0 => 'emh198310',
			(int) 1 => 'emh118640',
			(int) 2 => 'emh757610'
		),
		'scp' => array(
			(int) 0 => 'SPAC1F3.01'
		),
		'ome' => array(
			(int) 0 => 'OM_09G04730'
		),
		'sac' => array(
			(int) 0 => 'YOR001W'
		),
		'gsu' => array(
			(int) 0 => 'gsu100550',
			(int) 1 => 'gsu32670'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_010G01590'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.09g02390'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_09G04710'
		),
		'pse3' => array(
			(int) 0 => 'PI00G45670'
		),
		'ccr' => array(
			(int) 0 => 'ccr115580'
		),
		'mpu' => array(
			(int) 0 => 'MP12G01380'
		),
		'vca' => array(
			(int) 0 => 'VC00G136800',
			(int) 1 => 'VC00G48730',
			(int) 2 => 'VC00G48690'
		),
		'nga' => array(
			(int) 0 => 'Naga_100002g165'
		),
		'apr' => array(
			(int) 0 => 'AP00G52550'
		),
		'ptri' => array(
			(int) 0 => 'PTI_19G00780',
			(int) 1 => 'PTI_07G04250'
		),
		'cre' => array(
			(int) 0 => 'CR12G02930',
			(int) 1 => 'CR03G01040'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G13840'
		),
		'pte' => array(
			(int) 0 => 'pte167030',
			(int) 1 => 'pte286970',
			(int) 2 => 'pte608240',
			(int) 3 => 'pte388370',
			(int) 4 => 'pte323930'
		),
		'olu' => array(
			(int) 0 => 'OL12G03160'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_12G03510'
		),
		'ppa' => array(
			(int) 0 => 'PP00017G01510'
		),
		'cme' => array(
			(int) 0 => 'CM06G01770'
		),
		'tps' => array(
			(int) 0 => 'TP06G02760',
			(int) 1 => 'TP02G02830'
		),
		'fcy' => array(
			(int) 0 => 'FC001G11340',
			(int) 1 => 'FC002G05980'
		),
		'aan' => array(
			(int) 0 => 'AA0007G02140'
		)
	),
	'gene_id' => 'ENSMUSG00000017264',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'ENSMUSG00000017264',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'ORCC809_06G03660',
	'gf_placeholder' => 'HOM03P023632',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'ENSMUSG00000017264' => array(
		'gene_id' => 'ENSMUSG00000017264',
		'e_value' => '0.0',
		'bit_score' => '1846',
		'alignment_length' => '888',
		'identity_percentage' => '100.00',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ENSG00000171824' => array(
		'gene_id' => 'ENSG00000171824',
		'e_value' => '0.0',
		'bit_score' => '1581',
		'alignment_length' => '888',
		'identity_percentage' => '87.05',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'FBgn0038269' => array(
		'gene_id' => 'FBgn0038269',
		'e_value' => '1e-146',
		'bit_score' => '463',
		'alignment_length' => '667',
		'identity_percentage' => '40.48',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'DDB_G0271572' => array(
		'gene_id' => 'DDB_G0271572',
		'e_value' => '2e-128',
		'bit_score' => '422',
		'alignment_length' => '565',
		'identity_percentage' => '40.18',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'WBGene00000796' => array(
		'gene_id' => 'WBGene00000796',
		'e_value' => '2e-101',
		'bit_score' => '342',
		'alignment_length' => '555',
		'identity_percentage' => '36.76',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'phs78730' => array(
		'gene_id' => 'phs78730',
		'e_value' => '1e-89',
		'bit_score' => '316',
		'alignment_length' => '566',
		'identity_percentage' => '36.75',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ATR_00004G00910' => array(
		'gene_id' => 'ATR_00004G00910',
		'e_value' => '2e-87',
		'bit_score' => '305',
		'alignment_length' => '538',
		'identity_percentage' => '36.25',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OT_12G03110' => array(
		'gene_id' => 'OT_12G03110',
		'e_value' => '4e-87',
		'bit_score' => '300',
		'alignment_length' => '298',
		'identity_percentage' => '48.66',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OS03G06190' => array(
		'gene_id' => 'OS03G06190',
		'e_value' => '5e-87',
		'bit_score' => '296',
		'alignment_length' => '297',
		'identity_percentage' => '50.51',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AT5G35910' => array(
		'gene_id' => 'AT5G35910',
		'e_value' => '3e-86',
		'bit_score' => '300',
		'alignment_length' => '296',
		'identity_percentage' => '51.01',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OS10G30100' => array(
		'gene_id' => 'OS10G30100',
		'e_value' => '1e-85',
		'bit_score' => '299',
		'alignment_length' => '265',
		'identity_percentage' => '53.96',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ES0006G01330' => array(
		'gene_id' => 'ES0006G01330',
		'e_value' => '7e-84',
		'bit_score' => '298',
		'alignment_length' => '619',
		'identity_percentage' => '32.79',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CV00G21430' => array(
		'gene_id' => 'CV00G21430',
		'e_value' => '6e-83',
		'bit_score' => '276',
		'alignment_length' => '388',
		'identity_percentage' => '40.46',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AC00G08400' => array(
		'gene_id' => 'AC00G08400',
		'e_value' => '8e-83',
		'bit_score' => '280',
		'alignment_length' => '448',
		'identity_percentage' => '39.73',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'MRCC299_04G01370' => array(
		'gene_id' => 'MRCC299_04G01370',
		'e_value' => '2e-82',
		'bit_score' => '275',
		'alignment_length' => '331',
		'identity_percentage' => '45.32',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AT1G54440' => array(
		'gene_id' => 'AT1G54440',
		'e_value' => '2e-82',
		'bit_score' => '285',
		'alignment_length' => '296',
		'identity_percentage' => '50.34',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'emh198310' => array(
		'gene_id' => 'emh198310',
		'e_value' => '2e-82',
		'bit_score' => '274',
		'alignment_length' => '253',
		'identity_percentage' => '51.78',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'SPAC1F3.01' => array(
		'gene_id' => 'SPAC1F3.01',
		'e_value' => '2e-81',
		'bit_score' => '285',
		'alignment_length' => '530',
		'identity_percentage' => '34.34',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OM_09G04730' => array(
		'gene_id' => 'OM_09G04730',
		'e_value' => '3e-79',
		'bit_score' => '279',
		'alignment_length' => '298',
		'identity_percentage' => '47.65',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'YOR001W' => array(
		'gene_id' => 'YOR001W',
		'e_value' => '4e-79',
		'bit_score' => '277',
		'alignment_length' => '577',
		'identity_percentage' => '32.58',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'gsu100550' => array(
		'gene_id' => 'gsu100550',
		'e_value' => '1e-78',
		'bit_score' => '276',
		'alignment_length' => '302',
		'identity_percentage' => '46.03',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CNC64A_010G01590' => array(
		'gene_id' => 'CNC64A_010G01590',
		'e_value' => '1e-77',
		'bit_score' => '278',
		'alignment_length' => '345',
		'identity_percentage' => '41.16',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'RCC4223.09g02390' => array(
		'gene_id' => 'RCC4223.09g02390',
		'e_value' => '1e-73',
		'bit_score' => '264',
		'alignment_length' => '435',
		'identity_percentage' => '34.25',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'BPRRCC1105_09G04710' => array(
		'gene_id' => 'BPRRCC1105_09G04710',
		'e_value' => '3e-73',
		'bit_score' => '264',
		'alignment_length' => '321',
		'identity_percentage' => '42.99',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'PI00G45670' => array(
		'gene_id' => 'PI00G45670',
		'e_value' => '4e-73',
		'bit_score' => '262',
		'alignment_length' => '444',
		'identity_percentage' => '34.23',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ccr115580' => array(
		'gene_id' => 'ccr115580',
		'e_value' => '2e-68',
		'bit_score' => '250',
		'alignment_length' => '559',
		'identity_percentage' => '31.31',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'MP12G01380' => array(
		'gene_id' => 'MP12G01380',
		'e_value' => '3e-68',
		'bit_score' => '250',
		'alignment_length' => '309',
		'identity_percentage' => '42.72',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'VC00G136800' => array(
		'gene_id' => 'VC00G136800',
		'e_value' => '8e-68',
		'bit_score' => '250',
		'alignment_length' => '546',
		'identity_percentage' => '31.14',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'Naga_100002g165' => array(
		'gene_id' => 'Naga_100002g165',
		'e_value' => '1e-67',
		'bit_score' => '249',
		'alignment_length' => '598',
		'identity_percentage' => '33.61',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AP00G52550' => array(
		'gene_id' => 'AP00G52550',
		'e_value' => '1e-66',
		'bit_score' => '246',
		'alignment_length' => '283',
		'identity_percentage' => '44.17',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'PTI_19G00780' => array(
		'gene_id' => 'PTI_19G00780',
		'e_value' => '6e-65',
		'bit_score' => '240',
		'alignment_length' => '591',
		'identity_percentage' => '32.66',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CR12G02930' => array(
		'gene_id' => 'CR12G02930',
		'e_value' => '5e-64',
		'bit_score' => '238',
		'alignment_length' => '278',
		'identity_percentage' => '43.88',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'HE0000G13840' => array(
		'gene_id' => 'HE0000G13840',
		'e_value' => '3e-61',
		'bit_score' => '215',
		'alignment_length' => '319',
		'identity_percentage' => '39.50',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'pte167030' => array(
		'gene_id' => 'pte167030',
		'e_value' => '4e-61',
		'bit_score' => '224',
		'alignment_length' => '313',
		'identity_percentage' => '41.21',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'pte286970' => array(
		'gene_id' => 'pte286970',
		'e_value' => '3e-60',
		'bit_score' => '222',
		'alignment_length' => '318',
		'identity_percentage' => '40.57',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OL12G03160' => array(
		'gene_id' => 'OL12G03160',
		'e_value' => '7e-59',
		'bit_score' => '203',
		'alignment_length' => '164',
		'identity_percentage' => '57.93',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ORCC809_12G03510' => array(
		'gene_id' => 'ORCC809_12G03510',
		'e_value' => '7e-59',
		'bit_score' => '203',
		'alignment_length' => '164',
		'identity_percentage' => '59.15',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AC00G04220' => array(
		'gene_id' => 'AC00G04220',
		'e_value' => '2e-58',
		'bit_score' => '218',
		'alignment_length' => '334',
		'identity_percentage' => '36.23',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'PP00017G01510' => array(
		'gene_id' => 'PP00017G01510',
		'e_value' => '2e-56',
		'bit_score' => '213',
		'alignment_length' => '344',
		'identity_percentage' => '36.92',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'CV00G03180' => array(
		'gene_id' => 'CV00G03180',
		'e_value' => '6e-56',
		'bit_score' => '195',
		'alignment_length' => '165',
		'identity_percentage' => '52.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'ATR_00037G00830' => array(
		'gene_id' => 'ATR_00037G00830',
		'e_value' => '1e-52',
		'bit_score' => '202',
		'alignment_length' => '350',
		'identity_percentage' => '38.57',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'AT2G32415' => array(
		'gene_id' => 'AT2G32415',
		'e_value' => '3e-52',
		'bit_score' => '201',
		'alignment_length' => '320',
		'identity_percentage' => '40.00',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'OS07G32890' => array(
		'gene_id' => 'OS07G32890',
		'e_value' => '1e-51',
		'bit_score' => '199',
		'alignment_length' => '257',
		'identity_percentage' => '41.25',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'CM06G01770' => array(
		'gene_id' => 'CM06G01770',
		'e_value' => '1e-49',
		'bit_score' => '187',
		'alignment_length' => '269',
		'identity_percentage' => '39.03',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'TP06G02760' => array(
		'gene_id' => 'TP06G02760',
		'e_value' => '3e-44',
		'bit_score' => '163',
		'alignment_length' => '171',
		'identity_percentage' => '49.71',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'FC001G11340' => array(
		'gene_id' => 'FC001G11340',
		'e_value' => '1e-43',
		'bit_score' => '162',
		'alignment_length' => '152',
		'identity_percentage' => '54.61',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CNC64A_076G00030' => array(
		'gene_id' => 'CNC64A_076G00030',
		'e_value' => '2e-38',
		'bit_score' => '157',
		'alignment_length' => '146',
		'identity_percentage' => '48.63',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'AA0007G02140' => array(
		'gene_id' => 'AA0007G02140',
		'e_value' => '2e-28',
		'bit_score' => '125',
		'alignment_length' => '301',
		'identity_percentage' => '31.56',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'VC00G48730' => array(
		'gene_id' => 'VC00G48730',
		'e_value' => '6e-22',
		'bit_score' => '106',
		'alignment_length' => '200',
		'identity_percentage' => '32.50',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P045628'
		)
	),
	'CR03G01040' => array(
		'gene_id' => 'CR03G01040',
		'e_value' => '9e-20',
		'bit_score' => '99.4',
		'alignment_length' => '125',
		'identity_percentage' => '42.40',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P140440'
		)
	),
	'pte608240' => array(
		'gene_id' => 'pte608240',
		'e_value' => '9e-19',
		'bit_score' => '95.5',
		'alignment_length' => '200',
		'identity_percentage' => '31.50',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P034573'
		)
	),
	'PTI_07G04250' => array(
		'gene_id' => 'PTI_07G04250',
		'e_value' => '2e-16',
		'bit_score' => '88.2',
		'alignment_length' => '147',
		'identity_percentage' => '35.37',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'FC002G05980' => array(
		'gene_id' => 'FC002G05980',
		'e_value' => '3e-16',
		'bit_score' => '87.0',
		'alignment_length' => '150',
		'identity_percentage' => '34.67',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P034720',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'ES0228G00130' => array(
		'gene_id' => 'ES0228G00130',
		'e_value' => '2e-14',
		'bit_score' => '77.8',
		'alignment_length' => '115',
		'identity_percentage' => '35.65',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'TP02G02830' => array(
		'gene_id' => 'TP02G02830',
		'e_value' => '3e-11',
		'bit_score' => '71.6',
		'alignment_length' => '202',
		'identity_percentage' => '30.69',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'pte388370' => array(
		'gene_id' => 'pte388370',
		'e_value' => '1e-10',
		'bit_score' => '68.9',
		'alignment_length' => '149',
		'identity_percentage' => '34.90',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P005939',
			'ORTHOFAM' => 'ORTHO03P034573'
		)
	),
	'VC00G48690' => array(
		'gene_id' => 'VC00G48690',
		'e_value' => '4e-10',
		'bit_score' => '67.8',
		'alignment_length' => '135',
		'identity_percentage' => '29.63',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P045628'
		)
	),
	'pte323930' => array(
		'gene_id' => 'pte323930',
		'e_value' => '5e-09',
		'bit_score' => '63.5',
		'alignment_length' => '151',
		'identity_percentage' => '31.13',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P005939',
			'ORTHOFAM' => 'ORTHO03P034573'
		)
	),
	'AT2G25910' => array(
		'gene_id' => 'AT2G25910',
		'e_value' => '2e-08',
		'bit_score' => '60.8',
		'alignment_length' => '168',
		'identity_percentage' => '29.17',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	),
	'gsu32670' => array(
		'gene_id' => 'gsu32670',
		'e_value' => '3e-07',
		'bit_score' => '56.6',
		'alignment_length' => '172',
		'identity_percentage' => '32.56',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	),
	'ATR_00036G00870' => array(
		'gene_id' => 'ATR_00036G00870',
		'e_value' => '4e-07',
		'bit_score' => '57.4',
		'alignment_length' => '168',
		'identity_percentage' => '27.98',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	),
	'emh118640' => array(
		'gene_id' => 'emh118640',
		'e_value' => '4e-06',
		'bit_score' => '54.7',
		'alignment_length' => '119',
		'identity_percentage' => '33.61',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000056',
			'ORTHOFAM' => 'ORTHO03P003913'
		)
	),
	'emh757610' => array(
		'gene_id' => 'emh757610',
		'e_value' => '4e-06',
		'bit_score' => '54.7',
		'alignment_length' => '119',
		'identity_percentage' => '33.61',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000056',
			'ORTHOFAM' => 'ORTHO03P003913'
		)
	),
	'OS01G38620' => array(
		'gene_id' => 'OS01G38620',
		'e_value' => '5e-06',
		'bit_score' => '53.5',
		'alignment_length' => '171',
		'identity_percentage' => '26.90',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	)
)
$similarity_hits_species = array(
	'mus' => array(
		(int) 0 => 'ENSMUSG00000017264'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000171824'
	),
	'drm' => array(
		(int) 0 => 'FBgn0038269'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0271572'
	),
	'cel' => array(
		(int) 0 => 'WBGene00000796'
	),
	'phs' => array(
		(int) 0 => 'phs78730'
	),
	'atr' => array(
		(int) 0 => 'ATR_00004G00910',
		(int) 1 => 'ATR_00037G00830',
		(int) 2 => 'ATR_00036G00870'
	),
	'ota' => array(
		(int) 0 => 'OT_12G03110'
	),
	'osa' => array(
		(int) 0 => 'OS03G06190',
		(int) 1 => 'OS10G30100',
		(int) 2 => 'OS07G32890',
		(int) 3 => 'OS01G38620'
	),
	'ath' => array(
		(int) 0 => 'AT5G35910',
		(int) 1 => 'AT1G54440',
		(int) 2 => 'AT2G32415',
		(int) 3 => 'AT2G25910'
	),
	'esi' => array(
		(int) 0 => 'ES0006G01330',
		(int) 1 => 'ES0228G00130'
	),
	'cvu' => array(
		(int) 0 => 'CV00G21430',
		(int) 1 => 'CV00G03180'
	),
	'acg' => array(
		(int) 0 => 'AC00G08400',
		(int) 1 => 'AC00G04220'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_04G01370'
	),
	'emh' => array(
		(int) 0 => 'emh198310',
		(int) 1 => 'emh118640',
		(int) 2 => 'emh757610'
	),
	'scp' => array(
		(int) 0 => 'SPAC1F3.01'
	),
	'ome' => array(
		(int) 0 => 'OM_09G04730'
	),
	'sac' => array(
		(int) 0 => 'YOR001W'
	),
	'gsu' => array(
		(int) 0 => 'gsu100550',
		(int) 1 => 'gsu32670'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_010G01590'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.09g02390'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_09G04710'
	),
	'pse3' => array(
		(int) 0 => 'PI00G45670'
	),
	'ccr' => array(
		(int) 0 => 'ccr115580'
	),
	'mpu' => array(
		(int) 0 => 'MP12G01380'
	),
	'vca' => array(
		(int) 0 => 'VC00G136800',
		(int) 1 => 'VC00G48730',
		(int) 2 => 'VC00G48690'
	),
	'nga' => array(
		(int) 0 => 'Naga_100002g165'
	),
	'apr' => array(
		(int) 0 => 'AP00G52550'
	),
	'ptri' => array(
		(int) 0 => 'PTI_19G00780',
		(int) 1 => 'PTI_07G04250'
	),
	'cre' => array(
		(int) 0 => 'CR12G02930',
		(int) 1 => 'CR03G01040'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G13840'
	),
	'pte' => array(
		(int) 0 => 'pte167030',
		(int) 1 => 'pte286970',
		(int) 2 => 'pte608240',
		(int) 3 => 'pte388370',
		(int) 4 => 'pte323930'
	),
	'olu' => array(
		(int) 0 => 'OL12G03160'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_12G03510'
	),
	'ppa' => array(
		(int) 0 => 'PP00017G01510'
	),
	'cme' => array(
		(int) 0 => 'CM06G01770'
	),
	'tps' => array(
		(int) 0 => 'TP06G02760',
		(int) 1 => 'TP02G02830'
	),
	'fcy' => array(
		(int) 0 => 'FC001G11340',
		(int) 1 => 'FC002G05980'
	),
	'aan' => array(
		(int) 0 => 'AA0007G02140'
	)
)
$gene_id = 'ENSMUSG00000017264'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000017264'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'ORCC809_06G03660'
$gf_placeholder = 'HOM03P023632'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_076G00030',
	'e_value' => '2e-38',
	'bit_score' => '157',
	'alignment_length' => '146',
	'identity_percentage' => '48.63',
	'gf' => array(
		'HOMFAM' => 'HOM03P001122',
		'ORTHOFAM' => 'ORTHO03P013349'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_076G00030'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]
Code Context
                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'ENSMUSG00000017264' => array(
			'gene_id' => 'ENSMUSG00000017264',
			'e_value' => '0.0',
			'bit_score' => '1846',
			'alignment_length' => '888',
			'identity_percentage' => '100.00',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000171824' => array(
			'gene_id' => 'ENSG00000171824',
			'e_value' => '0.0',
			'bit_score' => '1581',
			'alignment_length' => '888',
			'identity_percentage' => '87.05',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0038269' => array(
			'gene_id' => 'FBgn0038269',
			'e_value' => '1e-146',
			'bit_score' => '463',
			'alignment_length' => '667',
			'identity_percentage' => '40.48',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0271572' => array(
			'gene_id' => 'DDB_G0271572',
			'e_value' => '2e-128',
			'bit_score' => '422',
			'alignment_length' => '565',
			'identity_percentage' => '40.18',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00000796' => array(
			'gene_id' => 'WBGene00000796',
			'e_value' => '2e-101',
			'bit_score' => '342',
			'alignment_length' => '555',
			'identity_percentage' => '36.76',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs78730' => array(
			'gene_id' => 'phs78730',
			'e_value' => '1e-89',
			'bit_score' => '316',
			'alignment_length' => '566',
			'identity_percentage' => '36.75',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00004G00910' => array(
			'gene_id' => 'ATR_00004G00910',
			'e_value' => '2e-87',
			'bit_score' => '305',
			'alignment_length' => '538',
			'identity_percentage' => '36.25',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_12G03110' => array(
			'gene_id' => 'OT_12G03110',
			'e_value' => '4e-87',
			'bit_score' => '300',
			'alignment_length' => '298',
			'identity_percentage' => '48.66',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G06190' => array(
			'gene_id' => 'OS03G06190',
			'e_value' => '5e-87',
			'bit_score' => '296',
			'alignment_length' => '297',
			'identity_percentage' => '50.51',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT5G35910' => array(
			'gene_id' => 'AT5G35910',
			'e_value' => '3e-86',
			'bit_score' => '300',
			'alignment_length' => '296',
			'identity_percentage' => '51.01',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS10G30100' => array(
			'gene_id' => 'OS10G30100',
			'e_value' => '1e-85',
			'bit_score' => '299',
			'alignment_length' => '265',
			'identity_percentage' => '53.96',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0006G01330' => array(
			'gene_id' => 'ES0006G01330',
			'e_value' => '7e-84',
			'bit_score' => '298',
			'alignment_length' => '619',
			'identity_percentage' => '32.79',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G21430' => array(
			'gene_id' => 'CV00G21430',
			'e_value' => '6e-83',
			'bit_score' => '276',
			'alignment_length' => '388',
			'identity_percentage' => '40.46',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G08400' => array(
			'gene_id' => 'AC00G08400',
			'e_value' => '8e-83',
			'bit_score' => '280',
			'alignment_length' => '448',
			'identity_percentage' => '39.73',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_04G01370' => array(
			'gene_id' => 'MRCC299_04G01370',
			'e_value' => '2e-82',
			'bit_score' => '275',
			'alignment_length' => '331',
			'identity_percentage' => '45.32',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT1G54440' => array(
			'gene_id' => 'AT1G54440',
			'e_value' => '2e-82',
			'bit_score' => '285',
			'alignment_length' => '296',
			'identity_percentage' => '50.34',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh198310' => array(
			'gene_id' => 'emh198310',
			'e_value' => '2e-82',
			'bit_score' => '274',
			'alignment_length' => '253',
			'identity_percentage' => '51.78',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1F3.01' => array(
			'gene_id' => 'SPAC1F3.01',
			'e_value' => '2e-81',
			'bit_score' => '285',
			'alignment_length' => '530',
			'identity_percentage' => '34.34',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_09G04730' => array(
			'gene_id' => 'OM_09G04730',
			'e_value' => '3e-79',
			'bit_score' => '279',
			'alignment_length' => '298',
			'identity_percentage' => '47.65',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'YOR001W' => array(
			'gene_id' => 'YOR001W',
			'e_value' => '4e-79',
			'bit_score' => '277',
			'alignment_length' => '577',
			'identity_percentage' => '32.58',
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu100550' => array(
			'gene_id' => 'gsu100550',
			'e_value' => '1e-78',
			'bit_score' => '276',
			'alignment_length' => '302',
			'identity_percentage' => '46.03',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_010G01590' => array(
			'gene_id' => 'CNC64A_010G01590',
			'e_value' => '1e-77',
			'bit_score' => '278',
			'alignment_length' => '345',
			'identity_percentage' => '41.16',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.09g02390' => array(
			'gene_id' => 'RCC4223.09g02390',
			'e_value' => '1e-73',
			'bit_score' => '264',
			'alignment_length' => '435',
			'identity_percentage' => '34.25',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_09G04710' => array(
			'gene_id' => 'BPRRCC1105_09G04710',
			'e_value' => '3e-73',
			'bit_score' => '264',
			'alignment_length' => '321',
			'identity_percentage' => '42.99',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G45670' => array(
			'gene_id' => 'PI00G45670',
			'e_value' => '4e-73',
			'bit_score' => '262',
			'alignment_length' => '444',
			'identity_percentage' => '34.23',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ccr115580' => array(
			'gene_id' => 'ccr115580',
			'e_value' => '2e-68',
			'bit_score' => '250',
			'alignment_length' => '559',
			'identity_percentage' => '31.31',
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP12G01380' => array(
			'gene_id' => 'MP12G01380',
			'e_value' => '3e-68',
			'bit_score' => '250',
			'alignment_length' => '309',
			'identity_percentage' => '42.72',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G136800' => array(
			'gene_id' => 'VC00G136800',
			'e_value' => '8e-68',
			'bit_score' => '250',
			'alignment_length' => '546',
			'identity_percentage' => '31.14',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100002g165' => array(
			'gene_id' => 'Naga_100002g165',
			'e_value' => '1e-67',
			'bit_score' => '249',
			'alignment_length' => '598',
			'identity_percentage' => '33.61',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G52550' => array(
			'gene_id' => 'AP00G52550',
			'e_value' => '1e-66',
			'bit_score' => '246',
			'alignment_length' => '283',
			'identity_percentage' => '44.17',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_19G00780' => array(
			'gene_id' => 'PTI_19G00780',
			'e_value' => '6e-65',
			'bit_score' => '240',
			'alignment_length' => '591',
			'identity_percentage' => '32.66',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G02930' => array(
			'gene_id' => 'CR12G02930',
			'e_value' => '5e-64',
			'bit_score' => '238',
			'alignment_length' => '278',
			'identity_percentage' => '43.88',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G13840' => array(
			'gene_id' => 'HE0000G13840',
			'e_value' => '3e-61',
			'bit_score' => '215',
			'alignment_length' => '319',
			'identity_percentage' => '39.50',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte167030' => array(
			'gene_id' => 'pte167030',
			'e_value' => '4e-61',
			'bit_score' => '224',
			'alignment_length' => '313',
			'identity_percentage' => '41.21',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte286970' => array(
			'gene_id' => 'pte286970',
			'e_value' => '3e-60',
			'bit_score' => '222',
			'alignment_length' => '318',
			'identity_percentage' => '40.57',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL12G03160' => array(
			'gene_id' => 'OL12G03160',
			'e_value' => '7e-59',
			'bit_score' => '203',
			'alignment_length' => '164',
			'identity_percentage' => '57.93',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_12G03510' => array(
			'gene_id' => 'ORCC809_12G03510',
			'e_value' => '7e-59',
			'bit_score' => '203',
			'alignment_length' => '164',
			'identity_percentage' => '59.15',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G04220' => array(
			'gene_id' => 'AC00G04220',
			'e_value' => '2e-58',
			'bit_score' => '218',
			'alignment_length' => '334',
			'identity_percentage' => '36.23',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00017G01510' => array(
			'gene_id' => 'PP00017G01510',
			'e_value' => '2e-56',
			'bit_score' => '213',
			'alignment_length' => '344',
			'identity_percentage' => '36.92',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G03180' => array(
			'gene_id' => 'CV00G03180',
			'e_value' => '6e-56',
			'bit_score' => '195',
			'alignment_length' => '165',
			'identity_percentage' => '52.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00037G00830' => array(
			'gene_id' => 'ATR_00037G00830',
			'e_value' => '1e-52',
			'bit_score' => '202',
			'alignment_length' => '350',
			'identity_percentage' => '38.57',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT2G32415' => array(
			'gene_id' => 'AT2G32415',
			'e_value' => '3e-52',
			'bit_score' => '201',
			'alignment_length' => '320',
			'identity_percentage' => '40.00',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS07G32890' => array(
			'gene_id' => 'OS07G32890',
			'e_value' => '1e-51',
			'bit_score' => '199',
			'alignment_length' => '257',
			'identity_percentage' => '41.25',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM06G01770' => array(
			'gene_id' => 'CM06G01770',
			'e_value' => '1e-49',
			'bit_score' => '187',
			'alignment_length' => '269',
			'identity_percentage' => '39.03',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP06G02760' => array(
			'gene_id' => 'TP06G02760',
			'e_value' => '3e-44',
			'bit_score' => '163',
			'alignment_length' => '171',
			'identity_percentage' => '49.71',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G11340' => array(
			'gene_id' => 'FC001G11340',
			'e_value' => '1e-43',
			'bit_score' => '162',
			'alignment_length' => '152',
			'identity_percentage' => '54.61',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_076G00030' => array(
			'gene_id' => 'CNC64A_076G00030',
			'e_value' => '2e-38',
			'bit_score' => '157',
			'alignment_length' => '146',
			'identity_percentage' => '48.63',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0007G02140' => array(
			'gene_id' => 'AA0007G02140',
			'e_value' => '2e-28',
			'bit_score' => '125',
			'alignment_length' => '301',
			'identity_percentage' => '31.56',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G48730' => array(
			'gene_id' => 'VC00G48730',
			'e_value' => '6e-22',
			'bit_score' => '106',
			'alignment_length' => '200',
			'identity_percentage' => '32.50',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR03G01040' => array(
			'gene_id' => 'CR03G01040',
			'e_value' => '9e-20',
			'bit_score' => '99.4',
			'alignment_length' => '125',
			'identity_percentage' => '42.40',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte608240' => array(
			'gene_id' => 'pte608240',
			'e_value' => '9e-19',
			'bit_score' => '95.5',
			'alignment_length' => '200',
			'identity_percentage' => '31.50',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_07G04250' => array(
			'gene_id' => 'PTI_07G04250',
			'e_value' => '2e-16',
			'bit_score' => '88.2',
			'alignment_length' => '147',
			'identity_percentage' => '35.37',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC002G05980' => array(
			'gene_id' => 'FC002G05980',
			'e_value' => '3e-16',
			'bit_score' => '87.0',
			'alignment_length' => '150',
			'identity_percentage' => '34.67',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0228G00130' => array(
			'gene_id' => 'ES0228G00130',
			'e_value' => '2e-14',
			'bit_score' => '77.8',
			'alignment_length' => '115',
			'identity_percentage' => '35.65',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP02G02830' => array(
			'gene_id' => 'TP02G02830',
			'e_value' => '3e-11',
			'bit_score' => '71.6',
			'alignment_length' => '202',
			'identity_percentage' => '30.69',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte388370' => array(
			'gene_id' => 'pte388370',
			'e_value' => '1e-10',
			'bit_score' => '68.9',
			'alignment_length' => '149',
			'identity_percentage' => '34.90',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G48690' => array(
			'gene_id' => 'VC00G48690',
			'e_value' => '4e-10',
			'bit_score' => '67.8',
			'alignment_length' => '135',
			'identity_percentage' => '29.63',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte323930' => array(
			'gene_id' => 'pte323930',
			'e_value' => '5e-09',
			'bit_score' => '63.5',
			'alignment_length' => '151',
			'identity_percentage' => '31.13',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT2G25910' => array(
			'gene_id' => 'AT2G25910',
			'e_value' => '2e-08',
			'bit_score' => '60.8',
			'alignment_length' => '168',
			'identity_percentage' => '29.17',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu32670' => array(
			'gene_id' => 'gsu32670',
			'e_value' => '3e-07',
			'bit_score' => '56.6',
			'alignment_length' => '172',
			'identity_percentage' => '32.56',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00036G00870' => array(
			'gene_id' => 'ATR_00036G00870',
			'e_value' => '4e-07',
			'bit_score' => '57.4',
			'alignment_length' => '168',
			'identity_percentage' => '27.98',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh118640' => array(
			'gene_id' => 'emh118640',
			'e_value' => '4e-06',
			'bit_score' => '54.7',
			'alignment_length' => '119',
			'identity_percentage' => '33.61',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh757610' => array(
			'gene_id' => 'emh757610',
			'e_value' => '4e-06',
			'bit_score' => '54.7',
			'alignment_length' => '119',
			'identity_percentage' => '33.61',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS01G38620' => array(
			'gene_id' => 'OS01G38620',
			'e_value' => '5e-06',
			'bit_score' => '53.5',
			'alignment_length' => '171',
			'identity_percentage' => '26.90',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'mus' => array(
			(int) 0 => 'ENSMUSG00000017264'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000171824'
		),
		'drm' => array(
			(int) 0 => 'FBgn0038269'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0271572'
		),
		'cel' => array(
			(int) 0 => 'WBGene00000796'
		),
		'phs' => array(
			(int) 0 => 'phs78730'
		),
		'atr' => array(
			(int) 0 => 'ATR_00004G00910',
			(int) 1 => 'ATR_00037G00830',
			(int) 2 => 'ATR_00036G00870'
		),
		'ota' => array(
			(int) 0 => 'OT_12G03110'
		),
		'osa' => array(
			(int) 0 => 'OS03G06190',
			(int) 1 => 'OS10G30100',
			(int) 2 => 'OS07G32890',
			(int) 3 => 'OS01G38620'
		),
		'ath' => array(
			(int) 0 => 'AT5G35910',
			(int) 1 => 'AT1G54440',
			(int) 2 => 'AT2G32415',
			(int) 3 => 'AT2G25910'
		),
		'esi' => array(
			(int) 0 => 'ES0006G01330',
			(int) 1 => 'ES0228G00130'
		),
		'cvu' => array(
			(int) 0 => 'CV00G21430',
			(int) 1 => 'CV00G03180'
		),
		'acg' => array(
			(int) 0 => 'AC00G08400',
			(int) 1 => 'AC00G04220'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_04G01370'
		),
		'emh' => array(
			(int) 0 => 'emh198310',
			(int) 1 => 'emh118640',
			(int) 2 => 'emh757610'
		),
		'scp' => array(
			(int) 0 => 'SPAC1F3.01'
		),
		'ome' => array(
			(int) 0 => 'OM_09G04730'
		),
		'sac' => array(
			(int) 0 => 'YOR001W'
		),
		'gsu' => array(
			(int) 0 => 'gsu100550',
			(int) 1 => 'gsu32670'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_010G01590'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.09g02390'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_09G04710'
		),
		'pse3' => array(
			(int) 0 => 'PI00G45670'
		),
		'ccr' => array(
			(int) 0 => 'ccr115580'
		),
		'mpu' => array(
			(int) 0 => 'MP12G01380'
		),
		'vca' => array(
			(int) 0 => 'VC00G136800',
			(int) 1 => 'VC00G48730',
			(int) 2 => 'VC00G48690'
		),
		'nga' => array(
			(int) 0 => 'Naga_100002g165'
		),
		'apr' => array(
			(int) 0 => 'AP00G52550'
		),
		'ptri' => array(
			(int) 0 => 'PTI_19G00780',
			(int) 1 => 'PTI_07G04250'
		),
		'cre' => array(
			(int) 0 => 'CR12G02930',
			(int) 1 => 'CR03G01040'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G13840'
		),
		'pte' => array(
			(int) 0 => 'pte167030',
			(int) 1 => 'pte286970',
			(int) 2 => 'pte608240',
			(int) 3 => 'pte388370',
			(int) 4 => 'pte323930'
		),
		'olu' => array(
			(int) 0 => 'OL12G03160'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_12G03510'
		),
		'ppa' => array(
			(int) 0 => 'PP00017G01510'
		),
		'cme' => array(
			(int) 0 => 'CM06G01770'
		),
		'tps' => array(
			(int) 0 => 'TP06G02760',
			(int) 1 => 'TP02G02830'
		),
		'fcy' => array(
			(int) 0 => 'FC001G11340',
			(int) 1 => 'FC002G05980'
		),
		'aan' => array(
			(int) 0 => 'AA0007G02140'
		)
	),
	'gene_id' => 'ENSMUSG00000017264',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'ENSMUSG00000017264',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'ORCC809_06G03660',
	'gf_placeholder' => 'HOM03P023632',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'ENSMUSG00000017264' => array(
		'gene_id' => 'ENSMUSG00000017264',
		'e_value' => '0.0',
		'bit_score' => '1846',
		'alignment_length' => '888',
		'identity_percentage' => '100.00',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ENSG00000171824' => array(
		'gene_id' => 'ENSG00000171824',
		'e_value' => '0.0',
		'bit_score' => '1581',
		'alignment_length' => '888',
		'identity_percentage' => '87.05',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'FBgn0038269' => array(
		'gene_id' => 'FBgn0038269',
		'e_value' => '1e-146',
		'bit_score' => '463',
		'alignment_length' => '667',
		'identity_percentage' => '40.48',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'DDB_G0271572' => array(
		'gene_id' => 'DDB_G0271572',
		'e_value' => '2e-128',
		'bit_score' => '422',
		'alignment_length' => '565',
		'identity_percentage' => '40.18',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'WBGene00000796' => array(
		'gene_id' => 'WBGene00000796',
		'e_value' => '2e-101',
		'bit_score' => '342',
		'alignment_length' => '555',
		'identity_percentage' => '36.76',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'phs78730' => array(
		'gene_id' => 'phs78730',
		'e_value' => '1e-89',
		'bit_score' => '316',
		'alignment_length' => '566',
		'identity_percentage' => '36.75',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ATR_00004G00910' => array(
		'gene_id' => 'ATR_00004G00910',
		'e_value' => '2e-87',
		'bit_score' => '305',
		'alignment_length' => '538',
		'identity_percentage' => '36.25',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OT_12G03110' => array(
		'gene_id' => 'OT_12G03110',
		'e_value' => '4e-87',
		'bit_score' => '300',
		'alignment_length' => '298',
		'identity_percentage' => '48.66',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OS03G06190' => array(
		'gene_id' => 'OS03G06190',
		'e_value' => '5e-87',
		'bit_score' => '296',
		'alignment_length' => '297',
		'identity_percentage' => '50.51',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AT5G35910' => array(
		'gene_id' => 'AT5G35910',
		'e_value' => '3e-86',
		'bit_score' => '300',
		'alignment_length' => '296',
		'identity_percentage' => '51.01',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OS10G30100' => array(
		'gene_id' => 'OS10G30100',
		'e_value' => '1e-85',
		'bit_score' => '299',
		'alignment_length' => '265',
		'identity_percentage' => '53.96',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ES0006G01330' => array(
		'gene_id' => 'ES0006G01330',
		'e_value' => '7e-84',
		'bit_score' => '298',
		'alignment_length' => '619',
		'identity_percentage' => '32.79',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CV00G21430' => array(
		'gene_id' => 'CV00G21430',
		'e_value' => '6e-83',
		'bit_score' => '276',
		'alignment_length' => '388',
		'identity_percentage' => '40.46',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AC00G08400' => array(
		'gene_id' => 'AC00G08400',
		'e_value' => '8e-83',
		'bit_score' => '280',
		'alignment_length' => '448',
		'identity_percentage' => '39.73',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'MRCC299_04G01370' => array(
		'gene_id' => 'MRCC299_04G01370',
		'e_value' => '2e-82',
		'bit_score' => '275',
		'alignment_length' => '331',
		'identity_percentage' => '45.32',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AT1G54440' => array(
		'gene_id' => 'AT1G54440',
		'e_value' => '2e-82',
		'bit_score' => '285',
		'alignment_length' => '296',
		'identity_percentage' => '50.34',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'emh198310' => array(
		'gene_id' => 'emh198310',
		'e_value' => '2e-82',
		'bit_score' => '274',
		'alignment_length' => '253',
		'identity_percentage' => '51.78',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'SPAC1F3.01' => array(
		'gene_id' => 'SPAC1F3.01',
		'e_value' => '2e-81',
		'bit_score' => '285',
		'alignment_length' => '530',
		'identity_percentage' => '34.34',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OM_09G04730' => array(
		'gene_id' => 'OM_09G04730',
		'e_value' => '3e-79',
		'bit_score' => '279',
		'alignment_length' => '298',
		'identity_percentage' => '47.65',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'YOR001W' => array(
		'gene_id' => 'YOR001W',
		'e_value' => '4e-79',
		'bit_score' => '277',
		'alignment_length' => '577',
		'identity_percentage' => '32.58',
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'gsu100550' => array(
		'gene_id' => 'gsu100550',
		'e_value' => '1e-78',
		'bit_score' => '276',
		'alignment_length' => '302',
		'identity_percentage' => '46.03',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CNC64A_010G01590' => array(
		'gene_id' => 'CNC64A_010G01590',
		'e_value' => '1e-77',
		'bit_score' => '278',
		'alignment_length' => '345',
		'identity_percentage' => '41.16',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'RCC4223.09g02390' => array(
		'gene_id' => 'RCC4223.09g02390',
		'e_value' => '1e-73',
		'bit_score' => '264',
		'alignment_length' => '435',
		'identity_percentage' => '34.25',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'BPRRCC1105_09G04710' => array(
		'gene_id' => 'BPRRCC1105_09G04710',
		'e_value' => '3e-73',
		'bit_score' => '264',
		'alignment_length' => '321',
		'identity_percentage' => '42.99',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'PI00G45670' => array(
		'gene_id' => 'PI00G45670',
		'e_value' => '4e-73',
		'bit_score' => '262',
		'alignment_length' => '444',
		'identity_percentage' => '34.23',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ccr115580' => array(
		'gene_id' => 'ccr115580',
		'e_value' => '2e-68',
		'bit_score' => '250',
		'alignment_length' => '559',
		'identity_percentage' => '31.31',
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'MP12G01380' => array(
		'gene_id' => 'MP12G01380',
		'e_value' => '3e-68',
		'bit_score' => '250',
		'alignment_length' => '309',
		'identity_percentage' => '42.72',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'VC00G136800' => array(
		'gene_id' => 'VC00G136800',
		'e_value' => '8e-68',
		'bit_score' => '250',
		'alignment_length' => '546',
		'identity_percentage' => '31.14',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'Naga_100002g165' => array(
		'gene_id' => 'Naga_100002g165',
		'e_value' => '1e-67',
		'bit_score' => '249',
		'alignment_length' => '598',
		'identity_percentage' => '33.61',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AP00G52550' => array(
		'gene_id' => 'AP00G52550',
		'e_value' => '1e-66',
		'bit_score' => '246',
		'alignment_length' => '283',
		'identity_percentage' => '44.17',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'PTI_19G00780' => array(
		'gene_id' => 'PTI_19G00780',
		'e_value' => '6e-65',
		'bit_score' => '240',
		'alignment_length' => '591',
		'identity_percentage' => '32.66',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CR12G02930' => array(
		'gene_id' => 'CR12G02930',
		'e_value' => '5e-64',
		'bit_score' => '238',
		'alignment_length' => '278',
		'identity_percentage' => '43.88',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'HE0000G13840' => array(
		'gene_id' => 'HE0000G13840',
		'e_value' => '3e-61',
		'bit_score' => '215',
		'alignment_length' => '319',
		'identity_percentage' => '39.50',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'pte167030' => array(
		'gene_id' => 'pte167030',
		'e_value' => '4e-61',
		'bit_score' => '224',
		'alignment_length' => '313',
		'identity_percentage' => '41.21',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'pte286970' => array(
		'gene_id' => 'pte286970',
		'e_value' => '3e-60',
		'bit_score' => '222',
		'alignment_length' => '318',
		'identity_percentage' => '40.57',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'OL12G03160' => array(
		'gene_id' => 'OL12G03160',
		'e_value' => '7e-59',
		'bit_score' => '203',
		'alignment_length' => '164',
		'identity_percentage' => '57.93',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'ORCC809_12G03510' => array(
		'gene_id' => 'ORCC809_12G03510',
		'e_value' => '7e-59',
		'bit_score' => '203',
		'alignment_length' => '164',
		'identity_percentage' => '59.15',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'AC00G04220' => array(
		'gene_id' => 'AC00G04220',
		'e_value' => '2e-58',
		'bit_score' => '218',
		'alignment_length' => '334',
		'identity_percentage' => '36.23',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'PP00017G01510' => array(
		'gene_id' => 'PP00017G01510',
		'e_value' => '2e-56',
		'bit_score' => '213',
		'alignment_length' => '344',
		'identity_percentage' => '36.92',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'CV00G03180' => array(
		'gene_id' => 'CV00G03180',
		'e_value' => '6e-56',
		'bit_score' => '195',
		'alignment_length' => '165',
		'identity_percentage' => '52.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'ATR_00037G00830' => array(
		'gene_id' => 'ATR_00037G00830',
		'e_value' => '1e-52',
		'bit_score' => '202',
		'alignment_length' => '350',
		'identity_percentage' => '38.57',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'AT2G32415' => array(
		'gene_id' => 'AT2G32415',
		'e_value' => '3e-52',
		'bit_score' => '201',
		'alignment_length' => '320',
		'identity_percentage' => '40.00',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'OS07G32890' => array(
		'gene_id' => 'OS07G32890',
		'e_value' => '1e-51',
		'bit_score' => '199',
		'alignment_length' => '257',
		'identity_percentage' => '41.25',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'CM06G01770' => array(
		'gene_id' => 'CM06G01770',
		'e_value' => '1e-49',
		'bit_score' => '187',
		'alignment_length' => '269',
		'identity_percentage' => '39.03',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'TP06G02760' => array(
		'gene_id' => 'TP06G02760',
		'e_value' => '3e-44',
		'bit_score' => '163',
		'alignment_length' => '171',
		'identity_percentage' => '49.71',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'FC001G11340' => array(
		'gene_id' => 'FC001G11340',
		'e_value' => '1e-43',
		'bit_score' => '162',
		'alignment_length' => '152',
		'identity_percentage' => '54.61',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'CNC64A_076G00030' => array(
		'gene_id' => 'CNC64A_076G00030',
		'e_value' => '2e-38',
		'bit_score' => '157',
		'alignment_length' => '146',
		'identity_percentage' => '48.63',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P013349'
		)
	),
	'AA0007G02140' => array(
		'gene_id' => 'AA0007G02140',
		'e_value' => '2e-28',
		'bit_score' => '125',
		'alignment_length' => '301',
		'identity_percentage' => '31.56',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P000994'
		)
	),
	'VC00G48730' => array(
		'gene_id' => 'VC00G48730',
		'e_value' => '6e-22',
		'bit_score' => '106',
		'alignment_length' => '200',
		'identity_percentage' => '32.50',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P045628'
		)
	),
	'CR03G01040' => array(
		'gene_id' => 'CR03G01040',
		'e_value' => '9e-20',
		'bit_score' => '99.4',
		'alignment_length' => '125',
		'identity_percentage' => '42.40',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P140440'
		)
	),
	'pte608240' => array(
		'gene_id' => 'pte608240',
		'e_value' => '9e-19',
		'bit_score' => '95.5',
		'alignment_length' => '200',
		'identity_percentage' => '31.50',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P034573'
		)
	),
	'PTI_07G04250' => array(
		'gene_id' => 'PTI_07G04250',
		'e_value' => '2e-16',
		'bit_score' => '88.2',
		'alignment_length' => '147',
		'identity_percentage' => '35.37',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'FC002G05980' => array(
		'gene_id' => 'FC002G05980',
		'e_value' => '3e-16',
		'bit_score' => '87.0',
		'alignment_length' => '150',
		'identity_percentage' => '34.67',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P034720',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'ES0228G00130' => array(
		'gene_id' => 'ES0228G00130',
		'e_value' => '2e-14',
		'bit_score' => '77.8',
		'alignment_length' => '115',
		'identity_percentage' => '35.65',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'TP02G02830' => array(
		'gene_id' => 'TP02G02830',
		'e_value' => '3e-11',
		'bit_score' => '71.6',
		'alignment_length' => '202',
		'identity_percentage' => '30.69',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P017522'
		)
	),
	'pte388370' => array(
		'gene_id' => 'pte388370',
		'e_value' => '1e-10',
		'bit_score' => '68.9',
		'alignment_length' => '149',
		'identity_percentage' => '34.90',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P005939',
			'ORTHOFAM' => 'ORTHO03P034573'
		)
	),
	'VC00G48690' => array(
		'gene_id' => 'VC00G48690',
		'e_value' => '4e-10',
		'bit_score' => '67.8',
		'alignment_length' => '135',
		'identity_percentage' => '29.63',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P001122',
			'ORTHOFAM' => 'ORTHO03P045628'
		)
	),
	'pte323930' => array(
		'gene_id' => 'pte323930',
		'e_value' => '5e-09',
		'bit_score' => '63.5',
		'alignment_length' => '151',
		'identity_percentage' => '31.13',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P005939',
			'ORTHOFAM' => 'ORTHO03P034573'
		)
	),
	'AT2G25910' => array(
		'gene_id' => 'AT2G25910',
		'e_value' => '2e-08',
		'bit_score' => '60.8',
		'alignment_length' => '168',
		'identity_percentage' => '29.17',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	),
	'gsu32670' => array(
		'gene_id' => 'gsu32670',
		'e_value' => '3e-07',
		'bit_score' => '56.6',
		'alignment_length' => '172',
		'identity_percentage' => '32.56',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	),
	'ATR_00036G00870' => array(
		'gene_id' => 'ATR_00036G00870',
		'e_value' => '4e-07',
		'bit_score' => '57.4',
		'alignment_length' => '168',
		'identity_percentage' => '27.98',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	),
	'emh118640' => array(
		'gene_id' => 'emh118640',
		'e_value' => '4e-06',
		'bit_score' => '54.7',
		'alignment_length' => '119',
		'identity_percentage' => '33.61',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000056',
			'ORTHOFAM' => 'ORTHO03P003913'
		)
	),
	'emh757610' => array(
		'gene_id' => 'emh757610',
		'e_value' => '4e-06',
		'bit_score' => '54.7',
		'alignment_length' => '119',
		'identity_percentage' => '33.61',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000056',
			'ORTHOFAM' => 'ORTHO03P003913'
		)
	),
	'OS01G38620' => array(
		'gene_id' => 'OS01G38620',
		'e_value' => '5e-06',
		'bit_score' => '53.5',
		'alignment_length' => '171',
		'identity_percentage' => '26.90',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P006561',
			'ORTHOFAM' => 'ORTHO03P007714'
		)
	)
)
$similarity_hits_species = array(
	'mus' => array(
		(int) 0 => 'ENSMUSG00000017264'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000171824'
	),
	'drm' => array(
		(int) 0 => 'FBgn0038269'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0271572'
	),
	'cel' => array(
		(int) 0 => 'WBGene00000796'
	),
	'phs' => array(
		(int) 0 => 'phs78730'
	),
	'atr' => array(
		(int) 0 => 'ATR_00004G00910',
		(int) 1 => 'ATR_00037G00830',
		(int) 2 => 'ATR_00036G00870'
	),
	'ota' => array(
		(int) 0 => 'OT_12G03110'
	),
	'osa' => array(
		(int) 0 => 'OS03G06190',
		(int) 1 => 'OS10G30100',
		(int) 2 => 'OS07G32890',
		(int) 3 => 'OS01G38620'
	),
	'ath' => array(
		(int) 0 => 'AT5G35910',
		(int) 1 => 'AT1G54440',
		(int) 2 => 'AT2G32415',
		(int) 3 => 'AT2G25910'
	),
	'esi' => array(
		(int) 0 => 'ES0006G01330',
		(int) 1 => 'ES0228G00130'
	),
	'cvu' => array(
		(int) 0 => 'CV00G21430',
		(int) 1 => 'CV00G03180'
	),
	'acg' => array(
		(int) 0 => 'AC00G08400',
		(int) 1 => 'AC00G04220'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_04G01370'
	),
	'emh' => array(
		(int) 0 => 'emh198310',
		(int) 1 => 'emh118640',
		(int) 2 => 'emh757610'
	),
	'scp' => array(
		(int) 0 => 'SPAC1F3.01'
	),
	'ome' => array(
		(int) 0 => 'OM_09G04730'
	),
	'sac' => array(
		(int) 0 => 'YOR001W'
	),
	'gsu' => array(
		(int) 0 => 'gsu100550',
		(int) 1 => 'gsu32670'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_010G01590'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.09g02390'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_09G04710'
	),
	'pse3' => array(
		(int) 0 => 'PI00G45670'
	),
	'ccr' => array(
		(int) 0 => 'ccr115580'
	),
	'mpu' => array(
		(int) 0 => 'MP12G01380'
	),
	'vca' => array(
		(int) 0 => 'VC00G136800',
		(int) 1 => 'VC00G48730',
		(int) 2 => 'VC00G48690'
	),
	'nga' => array(
		(int) 0 => 'Naga_100002g165'
	),
	'apr' => array(
		(int) 0 => 'AP00G52550'
	),
	'ptri' => array(
		(int) 0 => 'PTI_19G00780',
		(int) 1 => 'PTI_07G04250'
	),
	'cre' => array(
		(int) 0 => 'CR12G02930',
		(int) 1 => 'CR03G01040'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G13840'
	),
	'pte' => array(
		(int) 0 => 'pte167030',
		(int) 1 => 'pte286970',
		(int) 2 => 'pte608240',
		(int) 3 => 'pte388370',
		(int) 4 => 'pte323930'
	),
	'olu' => array(
		(int) 0 => 'OL12G03160'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_12G03510'
	),
	'ppa' => array(
		(int) 0 => 'PP00017G01510'
	),
	'cme' => array(
		(int) 0 => 'CM06G01770'
	),
	'tps' => array(
		(int) 0 => 'TP06G02760',
		(int) 1 => 'TP02G02830'
	),
	'fcy' => array(
		(int) 0 => 'FC001G11340',
		(int) 1 => 'FC002G05980'
	),
	'aan' => array(
		(int) 0 => 'AA0007G02140'
	)
)
$gene_id = 'ENSMUSG00000017264'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000017264'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'ORCC809_06G03660'
$gf_placeholder = 'HOM03P023632'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_076G00030',
	'e_value' => '2e-38',
	'bit_score' => '157',
	'alignment_length' => '146',
	'identity_percentage' => '48.63',
	'gf' => array(
		'HOMFAM' => 'HOM03P001122',
		'ORTHOFAM' => 'ORTHO03P013349'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_076G00030'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146