|
CNC64A_053G00030 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
[maximum depth reached]
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
),
'gene_id' => 'ENSMUSG00000006818',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000006818',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'MRCC299_02G00280',
'gf_placeholder' => 'HOM03P001517',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P199736'
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092266'
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P125267'
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P188832'
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P151582'
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P104180'
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P120410'
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092263'
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P095062'
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P171617'
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P133541'
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P124956'
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P162479'
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P111717'
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P174303'
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P190791'
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P119626'
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P131384'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
)
$gene_id = 'ENSMUSG00000006818'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000006818'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'MRCC299_02G00280'
$gf_placeholder = 'HOM03P001517'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P171617'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00030'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
[maximum depth reached]
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
),
'gene_id' => 'ENSMUSG00000006818',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000006818',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'MRCC299_02G00280',
'gf_placeholder' => 'HOM03P001517',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P199736'
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092266'
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P125267'
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P188832'
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P151582'
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P104180'
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P120410'
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092263'
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P095062'
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P171617'
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P133541'
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P124956'
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P162479'
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P111717'
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P174303'
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P190791'
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P119626'
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P131384'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
)
$gene_id = 'ENSMUSG00000006818'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000006818'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'MRCC299_02G00280'
$gf_placeholder = 'HOM03P001517'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P171617'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00030'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
2e-32 |
118 |
76 |
67.11 |
|
CNC64A_053G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
[maximum depth reached]
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
),
'gene_id' => 'ENSMUSG00000006818',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000006818',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'MRCC299_02G00280',
'gf_placeholder' => 'HOM03P001517',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P199736'
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092266'
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P125267'
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P188832'
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P151582'
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P104180'
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P120410'
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092263'
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P095062'
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P171617'
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P133541'
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P124956'
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P162479'
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P111717'
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P174303'
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P190791'
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P119626'
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P131384'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
)
$gene_id = 'ENSMUSG00000006818'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000006818'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'MRCC299_02G00280'
$gf_placeholder = 'HOM03P001517'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P190791'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
[maximum depth reached]
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
),
'gene_id' => 'ENSMUSG00000006818',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSMUSG00000006818',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'MRCC299_02G00280',
'gf_placeholder' => 'HOM03P001517',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSMUSG00000006818' => array(
'gene_id' => 'ENSMUSG00000006818',
'e_value' => '5e-166',
'bit_score' => '464',
'alignment_length' => '223',
'identity_percentage' => '100.00',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ENSG00000112096' => array(
'gene_id' => 'ENSG00000112096',
'e_value' => '3e-149',
'bit_score' => '422',
'alignment_length' => '223',
'identity_percentage' => '90.13',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004931' => array(
'gene_id' => 'WBGene00004931',
'e_value' => '1e-103',
'bit_score' => '306',
'alignment_length' => '223',
'identity_percentage' => '62.78',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'WBGene00004932' => array(
'gene_id' => 'WBGene00004932',
'e_value' => '1e-100',
'bit_score' => '298',
'alignment_length' => '223',
'identity_percentage' => '60.09',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AA0011G02290' => array(
'gene_id' => 'AA0011G02290',
'e_value' => '1e-92',
'bit_score' => '278',
'alignment_length' => '226',
'identity_percentage' => '59.73',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ES0002G00340' => array(
'gene_id' => 'ES0002G00340',
'e_value' => '2e-92',
'bit_score' => '278',
'alignment_length' => '231',
'identity_percentage' => '59.74',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FBgn0010213' => array(
'gene_id' => 'FBgn0010213',
'e_value' => '3e-92',
'bit_score' => '276',
'alignment_length' => '214',
'identity_percentage' => '59.81',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP05G03430' => array(
'gene_id' => 'TP05G03430',
'e_value' => '4e-90',
'bit_score' => '272',
'alignment_length' => '206',
'identity_percentage' => '60.19',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MP04G02430' => array(
'gene_id' => 'MP04G02430',
'e_value' => '5e-90',
'bit_score' => '272',
'alignment_length' => '222',
'identity_percentage' => '58.56',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'MRCC299_08G02540' => array(
'gene_id' => 'MRCC299_08G02540',
'e_value' => '4e-89',
'bit_score' => '269',
'alignment_length' => '220',
'identity_percentage' => '59.09',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G17260' => array(
'gene_id' => 'PI00G17260',
'e_value' => '6e-89',
'bit_score' => '269',
'alignment_length' => '230',
'identity_percentage' => '56.52',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'VC00G133110' => array(
'gene_id' => 'VC00G133110',
'e_value' => '3e-87',
'bit_score' => '264',
'alignment_length' => '225',
'identity_percentage' => '59.11',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ORCC809_04G03810' => array(
'gene_id' => 'ORCC809_04G03810',
'e_value' => '1e-86',
'bit_score' => '262',
'alignment_length' => '209',
'identity_percentage' => '56.94',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PTI_01G05850' => array(
'gene_id' => 'PTI_01G05850',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '204',
'identity_percentage' => '58.33',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.13g02410' => array(
'gene_id' => 'RCC4223.13g02410',
'e_value' => '2e-86',
'bit_score' => '262',
'alignment_length' => '202',
'identity_percentage' => '58.91',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OT_04G01400' => array(
'gene_id' => 'OT_04G01400',
'e_value' => '3e-86',
'bit_score' => '261',
'alignment_length' => '218',
'identity_percentage' => '56.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'phs144800' => array(
'gene_id' => 'phs144800',
'e_value' => '3e-85',
'bit_score' => '258',
'alignment_length' => '199',
'identity_percentage' => '65.83',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CR13G07570' => array(
'gene_id' => 'CR13G07570',
'e_value' => '5e-85',
'bit_score' => '258',
'alignment_length' => '226',
'identity_percentage' => '57.52',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OM_02G01500' => array(
'gene_id' => 'OM_02G01500',
'e_value' => '8e-85',
'bit_score' => '259',
'alignment_length' => '189',
'identity_percentage' => '62.43',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'DDB_G0271106' => array(
'gene_id' => 'DDB_G0271106',
'e_value' => '2e-84',
'bit_score' => '257',
'alignment_length' => '203',
'identity_percentage' => '58.62',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'HE0000G20920' => array(
'gene_id' => 'HE0000G20920',
'e_value' => '2e-83',
'bit_score' => '255',
'alignment_length' => '213',
'identity_percentage' => '57.28',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OL04G01390' => array(
'gene_id' => 'OL04G01390',
'e_value' => '2e-82',
'bit_score' => '252',
'alignment_length' => '219',
'identity_percentage' => '54.79',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'BPRRCC1105_18G00290' => array(
'gene_id' => 'BPRRCC1105_18G00290',
'e_value' => '4e-82',
'bit_score' => '257',
'alignment_length' => '192',
'identity_percentage' => '60.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'gsu127160' => array(
'gene_id' => 'gsu127160',
'e_value' => '9e-81',
'bit_score' => '248',
'alignment_length' => '201',
'identity_percentage' => '56.72',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PP00174G00210' => array(
'gene_id' => 'PP00174G00210',
'e_value' => '2e-79',
'bit_score' => '244',
'alignment_length' => '220',
'identity_percentage' => '54.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G10920' => array(
'gene_id' => 'AT3G10920',
'e_value' => '2e-78',
'bit_score' => '242',
'alignment_length' => '195',
'identity_percentage' => '60.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AC00G40000' => array(
'gene_id' => 'AC00G40000',
'e_value' => '1e-77',
'bit_score' => '240',
'alignment_length' => '192',
'identity_percentage' => '57.29',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CV00G04240' => array(
'gene_id' => 'CV00G04240',
'e_value' => '3e-76',
'bit_score' => '235',
'alignment_length' => '195',
'identity_percentage' => '56.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'OS05G25850' => array(
'gene_id' => 'OS05G25850',
'e_value' => '3e-75',
'bit_score' => '234',
'alignment_length' => '195',
'identity_percentage' => '58.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AP00G50430' => array(
'gene_id' => 'AP00G50430',
'e_value' => '1e-74',
'bit_score' => '232',
'alignment_length' => '203',
'identity_percentage' => '56.65',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CNC64A_004G02130' => array(
'gene_id' => 'CNC64A_004G02130',
'e_value' => '2e-74',
'bit_score' => '231',
'alignment_length' => '197',
'identity_percentage' => '56.35',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'CM18G01580' => array(
'gene_id' => 'CM18G01580',
'e_value' => '1e-69',
'bit_score' => '221',
'alignment_length' => '198',
'identity_percentage' => '55.56',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'AT3G56350' => array(
'gene_id' => 'AT3G56350',
'e_value' => '3e-65',
'bit_score' => '208',
'alignment_length' => '199',
'identity_percentage' => '52.76',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P199736'
)
),
'AP00G50420' => array(
'gene_id' => 'AP00G50420',
'e_value' => '2e-63',
'bit_score' => '204',
'alignment_length' => '212',
'identity_percentage' => '47.64',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'SPAC1486.01' => array(
'gene_id' => 'SPAC1486.01',
'e_value' => '3e-63',
'bit_score' => '202',
'alignment_length' => '207',
'identity_percentage' => '50.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'ATR_00077G00260' => array(
'gene_id' => 'ATR_00077G00260',
'e_value' => '4e-63',
'bit_score' => '202',
'alignment_length' => '170',
'identity_percentage' => '59.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'emh315300' => array(
'gene_id' => 'emh315300',
'e_value' => '4e-60',
'bit_score' => '196',
'alignment_length' => '200',
'identity_percentage' => '50.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G81010' => array(
'gene_id' => 'VC00G81010',
'e_value' => '9e-59',
'bit_score' => '191',
'alignment_length' => '209',
'identity_percentage' => '46.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR02G06330' => array(
'gene_id' => 'CR02G06330',
'e_value' => '9e-58',
'bit_score' => '188',
'alignment_length' => '211',
'identity_percentage' => '45.97',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'gsu78240' => array(
'gene_id' => 'gsu78240',
'e_value' => '3e-57',
'bit_score' => '187',
'alignment_length' => '213',
'identity_percentage' => '44.13',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'YHR008C' => array(
'gene_id' => 'YHR008C',
'e_value' => '6e-57',
'bit_score' => '187',
'alignment_length' => '234',
'identity_percentage' => '42.31',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'FC006G08770' => array(
'gene_id' => 'FC006G08770',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '205',
'identity_percentage' => '47.80',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'PI00G38930' => array(
'gene_id' => 'PI00G38930',
'e_value' => '2e-56',
'bit_score' => '185',
'alignment_length' => '207',
'identity_percentage' => '46.38',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G35570' => array(
'gene_id' => 'CV00G35570',
'e_value' => '1e-55',
'bit_score' => '183',
'alignment_length' => '208',
'identity_percentage' => '46.15',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'RCC4223.10g01480' => array(
'gene_id' => 'RCC4223.10g01480',
'e_value' => '1e-54',
'bit_score' => '180',
'alignment_length' => '207',
'identity_percentage' => '45.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CM14G00230' => array(
'gene_id' => 'CM14G00230',
'e_value' => '4e-54',
'bit_score' => '179',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ES0091G00170' => array(
'gene_id' => 'ES0091G00170',
'e_value' => '2e-53',
'bit_score' => '180',
'alignment_length' => '202',
'identity_percentage' => '46.04',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G41340' => array(
'gene_id' => 'AC00G41340',
'e_value' => '3e-53',
'bit_score' => '177',
'alignment_length' => '209',
'identity_percentage' => '45.45',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CNC64A_003G01100' => array(
'gene_id' => 'CNC64A_003G01100',
'e_value' => '1e-51',
'bit_score' => '172',
'alignment_length' => '206',
'identity_percentage' => '44.17',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr175720' => array(
'gene_id' => 'ccr175720',
'e_value' => '4e-49',
'bit_score' => '166',
'alignment_length' => '211',
'identity_percentage' => '40.76',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'pte226360' => array(
'gene_id' => 'pte226360',
'e_value' => '9e-49',
'bit_score' => '165',
'alignment_length' => '206',
'identity_percentage' => '40.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'RCC4223.09g02580' => array(
'gene_id' => 'RCC4223.09g02580',
'e_value' => '3e-48',
'bit_score' => '164',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G45530' => array(
'gene_id' => 'PI00G45530',
'e_value' => '1e-47',
'bit_score' => '162',
'alignment_length' => '199',
'identity_percentage' => '41.71',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PTI_09G03520' => array(
'gene_id' => 'PTI_09G03520',
'e_value' => '1e-47',
'bit_score' => '164',
'alignment_length' => '220',
'identity_percentage' => '37.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'ccr48440' => array(
'gene_id' => 'ccr48440',
'e_value' => '9e-47',
'bit_score' => '163',
'alignment_length' => '239',
'identity_percentage' => '38.08',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P001387'
)
),
'TP03G03480' => array(
'gene_id' => 'TP03G03480',
'e_value' => '2e-46',
'bit_score' => '160',
'alignment_length' => '201',
'identity_percentage' => '39.80',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AA0013G02190' => array(
'gene_id' => 'AA0013G02190',
'e_value' => '2e-46',
'bit_score' => '159',
'alignment_length' => '200',
'identity_percentage' => '45.50',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CR10G04050' => array(
'gene_id' => 'CR10G04050',
'e_value' => '8e-46',
'bit_score' => '158',
'alignment_length' => '224',
'identity_percentage' => '40.18',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'ES0201G00270' => array(
'gene_id' => 'ES0201G00270',
'e_value' => '1e-45',
'bit_score' => '157',
'alignment_length' => '194',
'identity_percentage' => '41.24',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'FC006G04690' => array(
'gene_id' => 'FC006G04690',
'e_value' => '4e-44',
'bit_score' => '154',
'alignment_length' => '199',
'identity_percentage' => '43.72',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'CV00G39720' => array(
'gene_id' => 'CV00G39720',
'e_value' => '7e-44',
'bit_score' => '153',
'alignment_length' => '216',
'identity_percentage' => '39.81',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092266'
)
),
'CNC64A_002G04590' => array(
'gene_id' => 'CNC64A_002G04590',
'e_value' => '5e-43',
'bit_score' => '151',
'alignment_length' => '209',
'identity_percentage' => '40.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'Naga_100558g2' => array(
'gene_id' => 'Naga_100558g2',
'e_value' => '1e-42',
'bit_score' => '149',
'alignment_length' => '191',
'identity_percentage' => '39.27',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'AC00G60650' => array(
'gene_id' => 'AC00G60650',
'e_value' => '2e-42',
'bit_score' => '149',
'alignment_length' => '214',
'identity_percentage' => '40.65',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'PP00002G02230' => array(
'gene_id' => 'PP00002G02230',
'e_value' => '2e-42',
'bit_score' => '150',
'alignment_length' => '205',
'identity_percentage' => '41.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AP00G37390' => array(
'gene_id' => 'AP00G37390',
'e_value' => '3e-41',
'bit_score' => '145',
'alignment_length' => '203',
'identity_percentage' => '40.89',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CM20G00280' => array(
'gene_id' => 'CM20G00280',
'e_value' => '9e-40',
'bit_score' => '144',
'alignment_length' => '195',
'identity_percentage' => '43.08',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P125267'
)
),
'VC00G105340' => array(
'gene_id' => 'VC00G105340',
'e_value' => '1e-39',
'bit_score' => '142',
'alignment_length' => '191',
'identity_percentage' => '41.36',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105370' => array(
'gene_id' => 'VC00G105370',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '220',
'identity_percentage' => '38.64',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P188832'
)
),
'ES0421G00040' => array(
'gene_id' => 'ES0421G00040',
'e_value' => '4e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '39.06',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'ES0219G00060' => array(
'gene_id' => 'ES0219G00060',
'e_value' => '6e-39',
'bit_score' => '140',
'alignment_length' => '192',
'identity_percentage' => '38.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047863'
)
),
'PP00022G01800' => array(
'gene_id' => 'PP00022G01800',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '226',
'identity_percentage' => '38.50',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'VC00G105360' => array(
'gene_id' => 'VC00G105360',
'e_value' => '3e-38',
'bit_score' => '139',
'alignment_length' => '228',
'identity_percentage' => '39.04',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P151582'
)
),
'Naga_100051g29' => array(
'gene_id' => 'Naga_100051g29',
'e_value' => '3e-38',
'bit_score' => '138',
'alignment_length' => '216',
'identity_percentage' => '37.96',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'TP07G00620' => array(
'gene_id' => 'TP07G00620',
'e_value' => '3e-37',
'bit_score' => '135',
'alignment_length' => '198',
'identity_percentage' => '37.88',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G29940' => array(
'gene_id' => 'CV00G29940',
'e_value' => '7e-37',
'bit_score' => '134',
'alignment_length' => '199',
'identity_percentage' => '40.20',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT4G25100' => array(
'gene_id' => 'AT4G25100',
'e_value' => '2e-36',
'bit_score' => '133',
'alignment_length' => '219',
'identity_percentage' => '38.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G88020' => array(
'gene_id' => 'CV00G88020',
'e_value' => '7e-36',
'bit_score' => '134',
'alignment_length' => '232',
'identity_percentage' => '36.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P104180'
)
),
'AT5G23310' => array(
'gene_id' => 'AT5G23310',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '192',
'identity_percentage' => '36.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR12G01760' => array(
'gene_id' => 'CR12G01760',
'e_value' => '7e-36',
'bit_score' => '133',
'alignment_length' => '218',
'identity_percentage' => '40.37',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'CNC64A_003G01110' => array(
'gene_id' => 'CNC64A_003G01110',
'e_value' => '8e-36',
'bit_score' => '131',
'alignment_length' => '209',
'identity_percentage' => '41.15',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P120410'
)
),
'ATR_00044G00090' => array(
'gene_id' => 'ATR_00044G00090',
'e_value' => '2e-35',
'bit_score' => '132',
'alignment_length' => '191',
'identity_percentage' => '36.65',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AT5G51100' => array(
'gene_id' => 'AT5G51100',
'e_value' => '2e-35',
'bit_score' => '133',
'alignment_length' => '239',
'identity_percentage' => '34.73',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G60420' => array(
'gene_id' => 'AC00G60420',
'e_value' => '6e-35',
'bit_score' => '129',
'alignment_length' => '209',
'identity_percentage' => '34.93',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P047370'
)
),
'pte87360' => array(
'gene_id' => 'pte87360',
'e_value' => '1e-33',
'bit_score' => '125',
'alignment_length' => '190',
'identity_percentage' => '37.89',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CV00G40850' => array(
'gene_id' => 'CV00G40850',
'e_value' => '1e-33',
'bit_score' => '126',
'alignment_length' => '236',
'identity_percentage' => '34.32',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P092263'
)
),
'OS06G05110' => array(
'gene_id' => 'OS06G05110',
'e_value' => '3e-33',
'bit_score' => '125',
'alignment_length' => '238',
'identity_percentage' => '32.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'PI00G57020' => array(
'gene_id' => 'PI00G57020',
'e_value' => '1e-32',
'bit_score' => '122',
'alignment_length' => '180',
'identity_percentage' => '42.22',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P095062'
)
),
'CNC64A_053G00030' => array(
'gene_id' => 'CNC64A_053G00030',
'e_value' => '2e-32',
'bit_score' => '118',
'alignment_length' => '76',
'identity_percentage' => '67.11',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P171617'
)
),
'AC00G11400' => array(
'gene_id' => 'AC00G11400',
'e_value' => '4e-32',
'bit_score' => '129',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'AC00G11410' => array(
'gene_id' => 'AC00G11410',
'e_value' => '4e-32',
'bit_score' => '128',
'alignment_length' => '204',
'identity_percentage' => '37.75',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'CR17G01600' => array(
'gene_id' => 'CR17G01600',
'e_value' => '5e-32',
'bit_score' => '124',
'alignment_length' => '214',
'identity_percentage' => '38.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P133541'
)
),
'VC00G117070' => array(
'gene_id' => 'VC00G117070',
'e_value' => '2e-28',
'bit_score' => '114',
'alignment_length' => '269',
'identity_percentage' => '32.34',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P071082'
)
),
'AP00G07700' => array(
'gene_id' => 'AP00G07700',
'e_value' => '7e-28',
'bit_score' => '108',
'alignment_length' => '122',
'identity_percentage' => '45.90',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P004561'
)
),
'VC00G23690' => array(
'gene_id' => 'VC00G23690',
'e_value' => '5e-27',
'bit_score' => '109',
'alignment_length' => '226',
'identity_percentage' => '29.65',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'CR16G10150' => array(
'gene_id' => 'CR16G10150',
'e_value' => '2e-26',
'bit_score' => '108',
'alignment_length' => '249',
'identity_percentage' => '30.92',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P066827'
)
),
'ATR_00002G00850' => array(
'gene_id' => 'ATR_00002G00850',
'e_value' => '1e-24',
'bit_score' => '103',
'alignment_length' => '219',
'identity_percentage' => '33.79',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'OS06G02500' => array(
'gene_id' => 'OS06G02500',
'e_value' => '1e-23',
'bit_score' => '101',
'alignment_length' => '210',
'identity_percentage' => '32.38',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P003681'
)
),
'emh596200' => array(
'gene_id' => 'emh596200',
'e_value' => '1e-22',
'bit_score' => '94.7',
'alignment_length' => '111',
'identity_percentage' => '40.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P124956'
)
),
'AP00G07690' => array(
'gene_id' => 'AP00G07690',
'e_value' => '7e-18',
'bit_score' => '80.5',
'alignment_length' => '87',
'identity_percentage' => '47.13',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P162479'
)
),
'pte256500' => array(
'gene_id' => 'pte256500',
'e_value' => '1e-15',
'bit_score' => '75.9',
'alignment_length' => '151',
'identity_percentage' => '33.77',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P111717'
)
),
'HE0000G44530' => array(
'gene_id' => 'HE0000G44530',
'e_value' => '1e-12',
'bit_score' => '65.1',
'alignment_length' => '56',
'identity_percentage' => '55.36',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P174303'
)
),
'CNC64A_053G00010' => array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P190791'
)
),
'SPBC3H7.04' => array(
'gene_id' => 'SPBC3H7.04',
'e_value' => '1e-11',
'bit_score' => '65.5',
'alignment_length' => '191',
'identity_percentage' => '28.80',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P119626'
)
),
'ES0342G00130' => array(
'gene_id' => 'ES0342G00130',
'e_value' => '1e-08',
'bit_score' => '56.2',
'alignment_length' => '117',
'identity_percentage' => '35.90',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P131384'
)
)
)
$similarity_hits_species = array(
'mus' => array(
(int) 0 => 'ENSMUSG00000006818'
),
'hom' => array(
(int) 0 => 'ENSG00000112096'
),
'cel' => array(
(int) 0 => 'WBGene00004931',
(int) 1 => 'WBGene00004932'
),
'aan' => array(
(int) 0 => 'AA0011G02290',
(int) 1 => 'AA0013G02190'
),
'esi' => array(
(int) 0 => 'ES0002G00340',
(int) 1 => 'ES0091G00170',
(int) 2 => 'ES0201G00270',
(int) 3 => 'ES0421G00040',
(int) 4 => 'ES0219G00060',
(int) 5 => 'ES0342G00130'
),
'drm' => array(
(int) 0 => 'FBgn0010213'
),
'tps' => array(
(int) 0 => 'TP05G03430',
(int) 1 => 'TP03G03480',
(int) 2 => 'TP07G00620'
),
'mpu' => array(
(int) 0 => 'MP04G02430'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_08G02540'
),
'pse3' => array(
(int) 0 => 'PI00G17260',
(int) 1 => 'PI00G38930',
(int) 2 => 'PI00G45530',
(int) 3 => 'PI00G57020'
),
'vca' => array(
(int) 0 => 'VC00G133110',
(int) 1 => 'VC00G81010',
(int) 2 => 'VC00G105340',
(int) 3 => 'VC00G105370',
(int) 4 => 'VC00G105360',
(int) 5 => 'VC00G117070',
(int) 6 => 'VC00G23690'
),
'orcc809' => array(
(int) 0 => 'ORCC809_04G03810'
),
'ptri' => array(
(int) 0 => 'PTI_01G05850',
(int) 1 => 'PTI_09G03520'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.13g02410',
(int) 1 => 'RCC4223.10g01480',
(int) 2 => 'RCC4223.09g02580'
),
'ota' => array(
(int) 0 => 'OT_04G01400'
),
'phs' => array(
(int) 0 => 'phs144800'
),
'cre' => array(
(int) 0 => 'CR13G07570',
(int) 1 => 'CR02G06330',
(int) 2 => 'CR10G04050',
(int) 3 => 'CR12G01760',
(int) 4 => 'CR17G01600',
(int) 5 => 'CR16G10150'
),
'ome' => array(
(int) 0 => 'OM_02G01500'
),
'ddi' => array(
(int) 0 => 'DDB_G0271106'
),
'hsp' => array(
(int) 0 => 'HE0000G20920',
(int) 1 => 'HE0000G44530'
),
'olu' => array(
(int) 0 => 'OL04G01390'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_18G00290'
),
'gsu' => array(
(int) 0 => 'gsu127160',
(int) 1 => 'gsu78240'
),
'ppa' => array(
(int) 0 => 'PP00174G00210',
(int) 1 => 'PP00002G02230',
(int) 2 => 'PP00022G01800'
),
'ath' => array(
(int) 0 => 'AT3G10920',
(int) 1 => 'AT3G56350',
(int) 2 => 'AT4G25100',
(int) 3 => 'AT5G23310',
(int) 4 => 'AT5G51100'
),
'acg' => array(
(int) 0 => 'AC00G40000',
(int) 1 => 'AC00G41340',
(int) 2 => 'AC00G60650',
(int) 3 => 'AC00G60420',
(int) 4 => 'AC00G11400',
(int) 5 => 'AC00G11410'
),
'cvu' => array(
(int) 0 => 'CV00G04240',
(int) 1 => 'CV00G35570',
(int) 2 => 'CV00G39720',
(int) 3 => 'CV00G29940',
(int) 4 => 'CV00G88020',
(int) 5 => 'CV00G40850'
),
'osa' => array(
(int) 0 => 'OS05G25850',
(int) 1 => 'OS06G05110',
(int) 2 => 'OS06G02500'
),
'apr' => array(
(int) 0 => 'AP00G50430',
(int) 1 => 'AP00G50420',
(int) 2 => 'AP00G37390',
(int) 3 => 'AP00G07700',
(int) 4 => 'AP00G07690'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G02130',
(int) 1 => 'CNC64A_003G01100',
(int) 2 => 'CNC64A_002G04590',
(int) 3 => 'CNC64A_003G01110'
),
'cme' => array(
(int) 0 => 'CM18G01580',
(int) 1 => 'CM14G00230',
(int) 2 => 'CM20G00280'
),
'scp' => array(
(int) 0 => 'SPAC1486.01',
(int) 1 => 'SPBC3H7.04'
),
'atr' => array(
(int) 0 => 'ATR_00077G00260',
(int) 1 => 'ATR_00044G00090',
(int) 2 => 'ATR_00002G00850'
),
'emh' => array(
(int) 0 => 'emh315300',
(int) 1 => 'emh596200'
),
'sac' => array(
(int) 0 => 'YHR008C'
),
'fcy' => array(
(int) 0 => 'FC006G08770',
(int) 1 => 'FC006G04690'
),
'ccr' => array(
(int) 0 => 'ccr175720',
(int) 1 => 'ccr48440'
),
'pte' => array(
(int) 0 => 'pte226360',
(int) 1 => 'pte87360',
(int) 2 => 'pte256500'
),
'nga' => array(
(int) 0 => 'Naga_100558g2',
(int) 1 => 'Naga_100051g29'
)
)
$gene_id = 'ENSMUSG00000006818'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSMUSG00000006818'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'MRCC299_02G00280'
$gf_placeholder = 'HOM03P001517'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_053G00010',
'e_value' => '2e-12',
'bit_score' => '64.3',
'alignment_length' => '51',
'identity_percentage' => '60.78',
'gf' => array(
'HOMFAM' => 'HOM03P000403',
'ORTHOFAM' => 'ORTHO03P190791'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_053G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
2e-12 |
64.3 |
51 |
60.78 |