|
CNC64A_201G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '890',
'alignment_length' => '428',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '2e-101',
'bit_score' => '316',
'alignment_length' => '321',
'identity_percentage' => '48.60',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '1e-75',
'bit_score' => '248',
'alignment_length' => '350',
'identity_percentage' => '39.14',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '6e-75',
'bit_score' => '248',
'alignment_length' => '351',
'identity_percentage' => '41.60',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '3e-74',
'bit_score' => '250',
'alignment_length' => '365',
'identity_percentage' => '38.90',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '7e-74',
'bit_score' => '240',
'alignment_length' => '312',
'identity_percentage' => '43.27',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-72',
'bit_score' => '236',
'alignment_length' => '321',
'identity_percentage' => '40.50',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '3e-72',
'bit_score' => '236',
'alignment_length' => '317',
'identity_percentage' => '42.90',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '2e-71',
'bit_score' => '239',
'alignment_length' => '442',
'identity_percentage' => '35.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '3e-70',
'bit_score' => '234',
'alignment_length' => '323',
'identity_percentage' => '40.87',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '1e-68',
'bit_score' => '230',
'alignment_length' => '385',
'identity_percentage' => '36.10',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '1e-67',
'bit_score' => '229',
'alignment_length' => '458',
'identity_percentage' => '34.72',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '7e-65',
'bit_score' => '229',
'alignment_length' => '324',
'identity_percentage' => '39.20',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '7e-63',
'bit_score' => '215',
'alignment_length' => '361',
'identity_percentage' => '36.84',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-60',
'bit_score' => '213',
'alignment_length' => '361',
'identity_percentage' => '36.57',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '7e-57',
'bit_score' => '199',
'alignment_length' => '320',
'identity_percentage' => '37.19',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '3e-55',
'bit_score' => '198',
'alignment_length' => '356',
'identity_percentage' => '34.27',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '1e-54',
'bit_score' => '199',
'alignment_length' => '323',
'identity_percentage' => '36.84',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '2e-53',
'bit_score' => '189',
'alignment_length' => '347',
'identity_percentage' => '35.45',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '4e-46',
'bit_score' => '165',
'alignment_length' => '236',
'identity_percentage' => '39.83',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '3e-44',
'bit_score' => '162',
'alignment_length' => '311',
'identity_percentage' => '36.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '2e-43',
'bit_score' => '161',
'alignment_length' => '344',
'identity_percentage' => '31.10',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '1e-39',
'bit_score' => '150',
'alignment_length' => '325',
'identity_percentage' => '30.46',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '1e-38',
'bit_score' => '148',
'alignment_length' => '364',
'identity_percentage' => '31.32',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '4e-38',
'bit_score' => '147',
'alignment_length' => '373',
'identity_percentage' => '28.69',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '9e-38',
'bit_score' => '148',
'alignment_length' => '383',
'identity_percentage' => '29.77',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '2e-35',
'bit_score' => '140',
'alignment_length' => '336',
'identity_percentage' => '27.68',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '5e-35',
'bit_score' => '140',
'alignment_length' => '171',
'identity_percentage' => '40.94',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-35',
'bit_score' => '140',
'alignment_length' => '201',
'identity_percentage' => '38.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '3e-34',
'bit_score' => '137',
'alignment_length' => '167',
'identity_percentage' => '41.32',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '4e-33',
'bit_score' => '134',
'alignment_length' => '179',
'identity_percentage' => '40.22',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '7e-33',
'bit_score' => '134',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '8e-33',
'bit_score' => '133',
'alignment_length' => '171',
'identity_percentage' => '38.60',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '3e-32',
'bit_score' => '129',
'alignment_length' => '249',
'identity_percentage' => '32.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '5e-32',
'bit_score' => '131',
'alignment_length' => '169',
'identity_percentage' => '42.01',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '179',
'identity_percentage' => '37.99',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '1e-31',
'bit_score' => '129',
'alignment_length' => '131',
'identity_percentage' => '51.15',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '1e-27',
'bit_score' => '119',
'alignment_length' => '242',
'identity_percentage' => '30.17',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '6e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '5e-25',
'bit_score' => '108',
'alignment_length' => '284',
'identity_percentage' => '28.87',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '8e-25',
'bit_score' => '110',
'alignment_length' => '203',
'identity_percentage' => '33.50',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '9e-25',
'bit_score' => '110',
'alignment_length' => '135',
'identity_percentage' => '41.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '4e-24',
'bit_score' => '108',
'alignment_length' => '186',
'identity_percentage' => '31.72',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-22',
'bit_score' => '104',
'alignment_length' => '184',
'identity_percentage' => '32.07',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '2e-22',
'bit_score' => '103',
'alignment_length' => '188',
'identity_percentage' => '35.64',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '4e-22',
'bit_score' => '102',
'alignment_length' => '207',
'identity_percentage' => '31.40',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '7e-22',
'bit_score' => '101',
'alignment_length' => '229',
'identity_percentage' => '31.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '5e-21',
'bit_score' => '99.4',
'alignment_length' => '196',
'identity_percentage' => '32.14',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '7e-21',
'bit_score' => '98.6',
'alignment_length' => '411',
'identity_percentage' => '23.36',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '8e-21',
'bit_score' => '97.8',
'alignment_length' => '283',
'identity_percentage' => '28.98',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '3e-20',
'bit_score' => '97.1',
'alignment_length' => '197',
'identity_percentage' => '29.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '5e-20',
'bit_score' => '95.9',
'alignment_length' => '185',
'identity_percentage' => '31.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '1e-19',
'bit_score' => '94.7',
'alignment_length' => '260',
'identity_percentage' => '30.77',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '1e-19',
'bit_score' => '95.1',
'alignment_length' => '191',
'identity_percentage' => '31.94',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '1e-19',
'bit_score' => '91.7',
'alignment_length' => '260',
'identity_percentage' => '27.69',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '2e-19',
'bit_score' => '94.4',
'alignment_length' => '299',
'identity_percentage' => '28.43',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '6e-19',
'bit_score' => '93.6',
'alignment_length' => '172',
'identity_percentage' => '33.72',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '8e-19',
'bit_score' => '92.4',
'alignment_length' => '180',
'identity_percentage' => '31.67',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '8e-19',
'bit_score' => '91.7',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-18',
'bit_score' => '89.0',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '1e-17',
'bit_score' => '89.0',
'alignment_length' => '342',
'identity_percentage' => '26.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '1e-17',
'bit_score' => '88.6',
'alignment_length' => '276',
'identity_percentage' => '28.62',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '1e-17',
'bit_score' => '86.3',
'alignment_length' => '271',
'identity_percentage' => '28.41',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '3e-17',
'bit_score' => '88.2',
'alignment_length' => '202',
'identity_percentage' => '30.20',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-16',
'bit_score' => '83.6',
'alignment_length' => '254',
'identity_percentage' => '27.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-16',
'bit_score' => '85.9',
'alignment_length' => '202',
'identity_percentage' => '30.69',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-16',
'bit_score' => '85.1',
'alignment_length' => '190',
'identity_percentage' => '29.47',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '3e-16',
'bit_score' => '84.7',
'alignment_length' => '253',
'identity_percentage' => '29.64',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '4e-16',
'bit_score' => '82.8',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000110060' => array(
'gene_id' => 'ENSG00000110060',
'e_value' => '2e-15',
'bit_score' => '82.0',
'alignment_length' => '361',
'identity_percentage' => '25.48',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '3e-15',
'bit_score' => '82.0',
'alignment_length' => '271',
'identity_percentage' => '28.04',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '196',
'identity_percentage' => '27.55',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '155',
'identity_percentage' => '33.55',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'AC00G62260' => array(
'gene_id' => 'AC00G62260',
'e_value' => '3e-14',
'bit_score' => '75.9',
'alignment_length' => '267',
'identity_percentage' => '26.97',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '8e-14',
'bit_score' => '77.0',
'alignment_length' => '319',
'identity_percentage' => '25.71',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '135',
'identity_percentage' => '31.85',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '192',
'identity_percentage' => '26.56',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '1e-12',
'bit_score' => '72.0',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '2e-12',
'bit_score' => '72.4',
'alignment_length' => '297',
'identity_percentage' => '26.94',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '5e-12',
'bit_score' => '70.9',
'alignment_length' => '270',
'identity_percentage' => '26.67',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '268',
'identity_percentage' => '25.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '239',
'identity_percentage' => '27.62',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '3e-11',
'bit_score' => '68.6',
'alignment_length' => '301',
'identity_percentage' => '25.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '282',
'identity_percentage' => '23.76',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '2e-10',
'bit_score' => '66.2',
'alignment_length' => '263',
'identity_percentage' => '24.71',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '4e-10',
'bit_score' => '64.3',
'alignment_length' => '231',
'identity_percentage' => '27.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'gsu125160' => array(
'gene_id' => 'gsu125160',
'e_value' => '5e-10',
'bit_score' => '65.1',
'alignment_length' => '272',
'identity_percentage' => '26.84',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'OT_20G00610' => array(
'gene_id' => 'OT_20G00610',
'e_value' => '6e-10',
'bit_score' => '63.9',
'alignment_length' => '299',
'identity_percentage' => '25.75',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '2e-09',
'bit_score' => '62.0',
'alignment_length' => '284',
'identity_percentage' => '26.06',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '3e-09',
'bit_score' => '62.4',
'alignment_length' => '294',
'identity_percentage' => '23.47',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR06G11620' => array(
'gene_id' => 'CR06G11620',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '174',
'identity_percentage' => '24.14',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_010G02180' => array(
'gene_id' => 'CNC64A_010G02180',
'e_value' => '2e-08',
'bit_score' => '60.5',
'alignment_length' => '158',
'identity_percentage' => '30.38',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CR13G06690' => array(
'gene_id' => 'CR13G06690',
'e_value' => '3e-08',
'bit_score' => '59.7',
'alignment_length' => '234',
'identity_percentage' => '23.93',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '3e-08',
'bit_score' => '58.2',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OL19G00580' => array(
'gene_id' => 'OL19G00580',
'e_value' => '1e-07',
'bit_score' => '56.6',
'alignment_length' => '270',
'identity_percentage' => '25.56',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PTI_07G03920' => array(
'gene_id' => 'PTI_07G03920',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '78',
'identity_percentage' => '39.74',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'OM_19G00710' => array(
'gene_id' => 'OM_19G00710',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '277',
'identity_percentage' => '25.27',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '3e-07',
'bit_score' => '56.6',
'alignment_length' => '227',
'identity_percentage' => '23.79',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G88410' => array(
'gene_id' => 'VC00G88410',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '338',
'identity_percentage' => '25.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'OS05G19954' => array(
'gene_id' => 'OS05G19954',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '268',
'identity_percentage' => '22.39',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'MP03G02190' => array(
'gene_id' => 'MP03G02190',
'e_value' => '7e-07',
'bit_score' => '55.5',
'alignment_length' => '84',
'identity_percentage' => '39.29',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PP00213G00560' => array(
'gene_id' => 'PP00213G00560',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '75',
'identity_percentage' => '42.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'emh684270' => array(
'gene_id' => 'emh684270',
'e_value' => '2e-06',
'bit_score' => '50.8',
'alignment_length' => '78',
'identity_percentage' => '42.31',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0034703' => array(
'gene_id' => 'FBgn0034703',
'e_value' => '2e-06',
'bit_score' => '53.5',
'alignment_length' => '308',
'identity_percentage' => '23.70',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'AT3G06950' => array(
'gene_id' => 'AT3G06950',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '287',
'identity_percentage' => '24.39',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '87',
'identity_percentage' => '29.89',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00045G00930' => array(
'gene_id' => 'ATR_00045G00930',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '258',
'identity_percentage' => '24.42',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00025G02700' => array(
'gene_id' => 'ATR_00025G02700',
'e_value' => '8e-06',
'bit_score' => '51.6',
'alignment_length' => '155',
'identity_percentage' => '26.45',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000110060',
(int) 2 => 'ENSG00000169972'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'drm' => array(
(int) 0 => 'FBgn0038811',
(int) 1 => 'FBgn0034703'
),
'cel' => array(
(int) 0 => 'WBGene00004248'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470',
(int) 3 => 'OM_19G00710'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670',
(int) 3 => 'MP03G02190'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL15G02230',
(int) 2 => 'OL09G01900',
(int) 3 => 'OL19G00580'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490',
(int) 2 => 'gsu125160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630',
(int) 2 => 'OT_20G00610'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980',
(int) 4 => 'PP00213G00560'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610',
(int) 1 => 'PTI_07G03920'
),
'scp' => array(
(int) 0 => 'SPCC16C4.06c',
(int) 1 => 'SPCC126.03',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320',
(int) 3 => 'AT3G06950'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090',
(int) 3 => 'ATR_00045G00930',
(int) 4 => 'ATR_00025G02700'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G62260',
(int) 2 => 'AC00G67180'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440',
(int) 3 => 'OS05G19954'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970',
(int) 3 => 'CR06G11620',
(int) 4 => 'CR13G06690'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840',
(int) 1 => 'VC00G88410'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_010G02180'
),
'emh' => array(
(int) 0 => 'emh684270'
)
),
'gene_id' => 'ENSG00000177192',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSG00000177192',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'BPRRCC1105_12G00350',
'gf_placeholder' => 'HOM03P010647',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '890',
'alignment_length' => '428',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '2e-101',
'bit_score' => '316',
'alignment_length' => '321',
'identity_percentage' => '48.60',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '1e-75',
'bit_score' => '248',
'alignment_length' => '350',
'identity_percentage' => '39.14',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '6e-75',
'bit_score' => '248',
'alignment_length' => '351',
'identity_percentage' => '41.60',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '3e-74',
'bit_score' => '250',
'alignment_length' => '365',
'identity_percentage' => '38.90',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '7e-74',
'bit_score' => '240',
'alignment_length' => '312',
'identity_percentage' => '43.27',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-72',
'bit_score' => '236',
'alignment_length' => '321',
'identity_percentage' => '40.50',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '3e-72',
'bit_score' => '236',
'alignment_length' => '317',
'identity_percentage' => '42.90',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '2e-71',
'bit_score' => '239',
'alignment_length' => '442',
'identity_percentage' => '35.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '3e-70',
'bit_score' => '234',
'alignment_length' => '323',
'identity_percentage' => '40.87',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '1e-68',
'bit_score' => '230',
'alignment_length' => '385',
'identity_percentage' => '36.10',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '1e-67',
'bit_score' => '229',
'alignment_length' => '458',
'identity_percentage' => '34.72',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '7e-65',
'bit_score' => '229',
'alignment_length' => '324',
'identity_percentage' => '39.20',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '7e-63',
'bit_score' => '215',
'alignment_length' => '361',
'identity_percentage' => '36.84',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-60',
'bit_score' => '213',
'alignment_length' => '361',
'identity_percentage' => '36.57',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '7e-57',
'bit_score' => '199',
'alignment_length' => '320',
'identity_percentage' => '37.19',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '3e-55',
'bit_score' => '198',
'alignment_length' => '356',
'identity_percentage' => '34.27',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '1e-54',
'bit_score' => '199',
'alignment_length' => '323',
'identity_percentage' => '36.84',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '2e-53',
'bit_score' => '189',
'alignment_length' => '347',
'identity_percentage' => '35.45',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '4e-46',
'bit_score' => '165',
'alignment_length' => '236',
'identity_percentage' => '39.83',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '3e-44',
'bit_score' => '162',
'alignment_length' => '311',
'identity_percentage' => '36.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '2e-43',
'bit_score' => '161',
'alignment_length' => '344',
'identity_percentage' => '31.10',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '1e-39',
'bit_score' => '150',
'alignment_length' => '325',
'identity_percentage' => '30.46',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '1e-38',
'bit_score' => '148',
'alignment_length' => '364',
'identity_percentage' => '31.32',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '4e-38',
'bit_score' => '147',
'alignment_length' => '373',
'identity_percentage' => '28.69',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '9e-38',
'bit_score' => '148',
'alignment_length' => '383',
'identity_percentage' => '29.77',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '2e-35',
'bit_score' => '140',
'alignment_length' => '336',
'identity_percentage' => '27.68',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '5e-35',
'bit_score' => '140',
'alignment_length' => '171',
'identity_percentage' => '40.94',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-35',
'bit_score' => '140',
'alignment_length' => '201',
'identity_percentage' => '38.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '3e-34',
'bit_score' => '137',
'alignment_length' => '167',
'identity_percentage' => '41.32',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '4e-33',
'bit_score' => '134',
'alignment_length' => '179',
'identity_percentage' => '40.22',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '7e-33',
'bit_score' => '134',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '8e-33',
'bit_score' => '133',
'alignment_length' => '171',
'identity_percentage' => '38.60',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '3e-32',
'bit_score' => '129',
'alignment_length' => '249',
'identity_percentage' => '32.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '5e-32',
'bit_score' => '131',
'alignment_length' => '169',
'identity_percentage' => '42.01',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '179',
'identity_percentage' => '37.99',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '1e-31',
'bit_score' => '129',
'alignment_length' => '131',
'identity_percentage' => '51.15',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '1e-27',
'bit_score' => '119',
'alignment_length' => '242',
'identity_percentage' => '30.17',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '6e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '5e-25',
'bit_score' => '108',
'alignment_length' => '284',
'identity_percentage' => '28.87',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '8e-25',
'bit_score' => '110',
'alignment_length' => '203',
'identity_percentage' => '33.50',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '9e-25',
'bit_score' => '110',
'alignment_length' => '135',
'identity_percentage' => '41.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '4e-24',
'bit_score' => '108',
'alignment_length' => '186',
'identity_percentage' => '31.72',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-22',
'bit_score' => '104',
'alignment_length' => '184',
'identity_percentage' => '32.07',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '2e-22',
'bit_score' => '103',
'alignment_length' => '188',
'identity_percentage' => '35.64',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '4e-22',
'bit_score' => '102',
'alignment_length' => '207',
'identity_percentage' => '31.40',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '7e-22',
'bit_score' => '101',
'alignment_length' => '229',
'identity_percentage' => '31.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '5e-21',
'bit_score' => '99.4',
'alignment_length' => '196',
'identity_percentage' => '32.14',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '7e-21',
'bit_score' => '98.6',
'alignment_length' => '411',
'identity_percentage' => '23.36',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '8e-21',
'bit_score' => '97.8',
'alignment_length' => '283',
'identity_percentage' => '28.98',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '3e-20',
'bit_score' => '97.1',
'alignment_length' => '197',
'identity_percentage' => '29.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '5e-20',
'bit_score' => '95.9',
'alignment_length' => '185',
'identity_percentage' => '31.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '1e-19',
'bit_score' => '94.7',
'alignment_length' => '260',
'identity_percentage' => '30.77',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '1e-19',
'bit_score' => '95.1',
'alignment_length' => '191',
'identity_percentage' => '31.94',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '1e-19',
'bit_score' => '91.7',
'alignment_length' => '260',
'identity_percentage' => '27.69',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '2e-19',
'bit_score' => '94.4',
'alignment_length' => '299',
'identity_percentage' => '28.43',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '6e-19',
'bit_score' => '93.6',
'alignment_length' => '172',
'identity_percentage' => '33.72',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000764',
'ORTHOFAM' => 'ORTHO03P000662'
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '8e-19',
'bit_score' => '92.4',
'alignment_length' => '180',
'identity_percentage' => '31.67',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '8e-19',
'bit_score' => '91.7',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-18',
'bit_score' => '89.0',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '1e-17',
'bit_score' => '89.0',
'alignment_length' => '342',
'identity_percentage' => '26.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '1e-17',
'bit_score' => '88.6',
'alignment_length' => '276',
'identity_percentage' => '28.62',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '1e-17',
'bit_score' => '86.3',
'alignment_length' => '271',
'identity_percentage' => '28.41',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '3e-17',
'bit_score' => '88.2',
'alignment_length' => '202',
'identity_percentage' => '30.20',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-16',
'bit_score' => '83.6',
'alignment_length' => '254',
'identity_percentage' => '27.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-16',
'bit_score' => '85.9',
'alignment_length' => '202',
'identity_percentage' => '30.69',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-16',
'bit_score' => '85.1',
'alignment_length' => '190',
'identity_percentage' => '29.47',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '3e-16',
'bit_score' => '84.7',
'alignment_length' => '253',
'identity_percentage' => '29.64',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '4e-16',
'bit_score' => '82.8',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ENSG00000110060' => array(
'gene_id' => 'ENSG00000110060',
'e_value' => '2e-15',
'bit_score' => '82.0',
'alignment_length' => '361',
'identity_percentage' => '25.48',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '3e-15',
'bit_score' => '82.0',
'alignment_length' => '271',
'identity_percentage' => '28.04',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '196',
'identity_percentage' => '27.55',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '155',
'identity_percentage' => '33.55',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AC00G62260' => array(
'gene_id' => 'AC00G62260',
'e_value' => '3e-14',
'bit_score' => '75.9',
'alignment_length' => '267',
'identity_percentage' => '26.97',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '8e-14',
'bit_score' => '77.0',
'alignment_length' => '319',
'identity_percentage' => '25.71',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '135',
'identity_percentage' => '31.85',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '192',
'identity_percentage' => '26.56',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '1e-12',
'bit_score' => '72.0',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '2e-12',
'bit_score' => '72.4',
'alignment_length' => '297',
'identity_percentage' => '26.94',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P019199',
'ORTHOFAM' => 'ORTHO03P025037'
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '5e-12',
'bit_score' => '70.9',
'alignment_length' => '270',
'identity_percentage' => '26.67',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '268',
'identity_percentage' => '25.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '239',
'identity_percentage' => '27.62',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '3e-11',
'bit_score' => '68.6',
'alignment_length' => '301',
'identity_percentage' => '25.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '282',
'identity_percentage' => '23.76',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P074791'
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '2e-10',
'bit_score' => '66.2',
'alignment_length' => '263',
'identity_percentage' => '24.71',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '4e-10',
'bit_score' => '64.3',
'alignment_length' => '231',
'identity_percentage' => '27.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'gsu125160' => array(
'gene_id' => 'gsu125160',
'e_value' => '5e-10',
'bit_score' => '65.1',
'alignment_length' => '272',
'identity_percentage' => '26.84',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OT_20G00610' => array(
'gene_id' => 'OT_20G00610',
'e_value' => '6e-10',
'bit_score' => '63.9',
'alignment_length' => '299',
'identity_percentage' => '25.75',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '2e-09',
'bit_score' => '62.0',
'alignment_length' => '284',
'identity_percentage' => '26.06',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P005136',
'ORTHOFAM' => 'ORTHO03P004812'
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '3e-09',
'bit_score' => '62.4',
'alignment_length' => '294',
'identity_percentage' => '23.47',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'CR06G11620' => array(
'gene_id' => 'CR06G11620',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '174',
'identity_percentage' => '24.14',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CNC64A_010G02180' => array(
'gene_id' => 'CNC64A_010G02180',
'e_value' => '2e-08',
'bit_score' => '60.5',
'alignment_length' => '158',
'identity_percentage' => '30.38',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CR13G06690' => array(
'gene_id' => 'CR13G06690',
'e_value' => '3e-08',
'bit_score' => '59.7',
'alignment_length' => '234',
'identity_percentage' => '23.93',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '3e-08',
'bit_score' => '58.2',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'OL19G00580' => array(
'gene_id' => 'OL19G00580',
'e_value' => '1e-07',
'bit_score' => '56.6',
'alignment_length' => '270',
'identity_percentage' => '25.56',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'PTI_07G03920' => array(
'gene_id' => 'PTI_07G03920',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '78',
'identity_percentage' => '39.74',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OM_19G00710' => array(
'gene_id' => 'OM_19G00710',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '277',
'identity_percentage' => '25.27',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '3e-07',
'bit_score' => '56.6',
'alignment_length' => '227',
'identity_percentage' => '23.79',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P020884',
'ORTHOFAM' => 'ORTHO03P029537'
)
),
'VC00G88410' => array(
'gene_id' => 'VC00G88410',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '338',
'identity_percentage' => '25.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P063632'
)
),
'OS05G19954' => array(
'gene_id' => 'OS05G19954',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '268',
'identity_percentage' => '22.39',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'MP03G02190' => array(
'gene_id' => 'MP03G02190',
'e_value' => '7e-07',
'bit_score' => '55.5',
'alignment_length' => '84',
'identity_percentage' => '39.29',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PP00213G00560' => array(
'gene_id' => 'PP00213G00560',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '75',
'identity_percentage' => '42.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'emh684270' => array(
'gene_id' => 'emh684270',
'e_value' => '2e-06',
'bit_score' => '50.8',
'alignment_length' => '78',
'identity_percentage' => '42.31',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'FBgn0034703' => array(
'gene_id' => 'FBgn0034703',
'e_value' => '2e-06',
'bit_score' => '53.5',
'alignment_length' => '308',
'identity_percentage' => '23.70',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AT3G06950' => array(
'gene_id' => 'AT3G06950',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '287',
'identity_percentage' => '24.39',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '87',
'identity_percentage' => '29.89',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ATR_00045G00930' => array(
'gene_id' => 'ATR_00045G00930',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '258',
'identity_percentage' => '24.42',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ATR_00025G02700' => array(
'gene_id' => 'ATR_00025G02700',
'e_value' => '8e-06',
'bit_score' => '51.6',
'alignment_length' => '155',
'identity_percentage' => '26.45',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P005953',
'ORTHOFAM' => 'ORTHO03P016137'
)
)
)
$similarity_hits_species = array(
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000110060',
(int) 2 => 'ENSG00000169972'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'drm' => array(
(int) 0 => 'FBgn0038811',
(int) 1 => 'FBgn0034703'
),
'cel' => array(
(int) 0 => 'WBGene00004248'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470',
(int) 3 => 'OM_19G00710'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670',
(int) 3 => 'MP03G02190'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL15G02230',
(int) 2 => 'OL09G01900',
(int) 3 => 'OL19G00580'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490',
(int) 2 => 'gsu125160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630',
(int) 2 => 'OT_20G00610'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980',
(int) 4 => 'PP00213G00560'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610',
(int) 1 => 'PTI_07G03920'
),
'scp' => array(
(int) 0 => 'SPCC16C4.06c',
(int) 1 => 'SPCC126.03',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320',
(int) 3 => 'AT3G06950'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090',
(int) 3 => 'ATR_00045G00930',
(int) 4 => 'ATR_00025G02700'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G62260',
(int) 2 => 'AC00G67180'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440',
(int) 3 => 'OS05G19954'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970',
(int) 3 => 'CR06G11620',
(int) 4 => 'CR13G06690'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840',
(int) 1 => 'VC00G88410'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_010G02180'
),
'emh' => array(
(int) 0 => 'emh684270'
)
)
$gene_id = 'ENSG00000177192'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSG00000177192'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'BPRRCC1105_12G00350'
$gf_placeholder = 'HOM03P010647'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '4e-16',
'bit_score' => '82.8',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_201G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '890',
'alignment_length' => '428',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '2e-101',
'bit_score' => '316',
'alignment_length' => '321',
'identity_percentage' => '48.60',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '1e-75',
'bit_score' => '248',
'alignment_length' => '350',
'identity_percentage' => '39.14',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '6e-75',
'bit_score' => '248',
'alignment_length' => '351',
'identity_percentage' => '41.60',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '3e-74',
'bit_score' => '250',
'alignment_length' => '365',
'identity_percentage' => '38.90',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '7e-74',
'bit_score' => '240',
'alignment_length' => '312',
'identity_percentage' => '43.27',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-72',
'bit_score' => '236',
'alignment_length' => '321',
'identity_percentage' => '40.50',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '3e-72',
'bit_score' => '236',
'alignment_length' => '317',
'identity_percentage' => '42.90',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '2e-71',
'bit_score' => '239',
'alignment_length' => '442',
'identity_percentage' => '35.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '3e-70',
'bit_score' => '234',
'alignment_length' => '323',
'identity_percentage' => '40.87',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '1e-68',
'bit_score' => '230',
'alignment_length' => '385',
'identity_percentage' => '36.10',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '1e-67',
'bit_score' => '229',
'alignment_length' => '458',
'identity_percentage' => '34.72',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '7e-65',
'bit_score' => '229',
'alignment_length' => '324',
'identity_percentage' => '39.20',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '7e-63',
'bit_score' => '215',
'alignment_length' => '361',
'identity_percentage' => '36.84',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-60',
'bit_score' => '213',
'alignment_length' => '361',
'identity_percentage' => '36.57',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '7e-57',
'bit_score' => '199',
'alignment_length' => '320',
'identity_percentage' => '37.19',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '3e-55',
'bit_score' => '198',
'alignment_length' => '356',
'identity_percentage' => '34.27',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '1e-54',
'bit_score' => '199',
'alignment_length' => '323',
'identity_percentage' => '36.84',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '2e-53',
'bit_score' => '189',
'alignment_length' => '347',
'identity_percentage' => '35.45',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '4e-46',
'bit_score' => '165',
'alignment_length' => '236',
'identity_percentage' => '39.83',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '3e-44',
'bit_score' => '162',
'alignment_length' => '311',
'identity_percentage' => '36.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '2e-43',
'bit_score' => '161',
'alignment_length' => '344',
'identity_percentage' => '31.10',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '1e-39',
'bit_score' => '150',
'alignment_length' => '325',
'identity_percentage' => '30.46',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '1e-38',
'bit_score' => '148',
'alignment_length' => '364',
'identity_percentage' => '31.32',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '4e-38',
'bit_score' => '147',
'alignment_length' => '373',
'identity_percentage' => '28.69',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '9e-38',
'bit_score' => '148',
'alignment_length' => '383',
'identity_percentage' => '29.77',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '2e-35',
'bit_score' => '140',
'alignment_length' => '336',
'identity_percentage' => '27.68',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '5e-35',
'bit_score' => '140',
'alignment_length' => '171',
'identity_percentage' => '40.94',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-35',
'bit_score' => '140',
'alignment_length' => '201',
'identity_percentage' => '38.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '3e-34',
'bit_score' => '137',
'alignment_length' => '167',
'identity_percentage' => '41.32',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '4e-33',
'bit_score' => '134',
'alignment_length' => '179',
'identity_percentage' => '40.22',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '7e-33',
'bit_score' => '134',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '8e-33',
'bit_score' => '133',
'alignment_length' => '171',
'identity_percentage' => '38.60',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '3e-32',
'bit_score' => '129',
'alignment_length' => '249',
'identity_percentage' => '32.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '5e-32',
'bit_score' => '131',
'alignment_length' => '169',
'identity_percentage' => '42.01',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '179',
'identity_percentage' => '37.99',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '1e-31',
'bit_score' => '129',
'alignment_length' => '131',
'identity_percentage' => '51.15',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '1e-27',
'bit_score' => '119',
'alignment_length' => '242',
'identity_percentage' => '30.17',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '6e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '5e-25',
'bit_score' => '108',
'alignment_length' => '284',
'identity_percentage' => '28.87',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '8e-25',
'bit_score' => '110',
'alignment_length' => '203',
'identity_percentage' => '33.50',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '9e-25',
'bit_score' => '110',
'alignment_length' => '135',
'identity_percentage' => '41.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '4e-24',
'bit_score' => '108',
'alignment_length' => '186',
'identity_percentage' => '31.72',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-22',
'bit_score' => '104',
'alignment_length' => '184',
'identity_percentage' => '32.07',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '2e-22',
'bit_score' => '103',
'alignment_length' => '188',
'identity_percentage' => '35.64',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '4e-22',
'bit_score' => '102',
'alignment_length' => '207',
'identity_percentage' => '31.40',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '7e-22',
'bit_score' => '101',
'alignment_length' => '229',
'identity_percentage' => '31.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '5e-21',
'bit_score' => '99.4',
'alignment_length' => '196',
'identity_percentage' => '32.14',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '7e-21',
'bit_score' => '98.6',
'alignment_length' => '411',
'identity_percentage' => '23.36',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '8e-21',
'bit_score' => '97.8',
'alignment_length' => '283',
'identity_percentage' => '28.98',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '3e-20',
'bit_score' => '97.1',
'alignment_length' => '197',
'identity_percentage' => '29.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '5e-20',
'bit_score' => '95.9',
'alignment_length' => '185',
'identity_percentage' => '31.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '1e-19',
'bit_score' => '94.7',
'alignment_length' => '260',
'identity_percentage' => '30.77',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '1e-19',
'bit_score' => '95.1',
'alignment_length' => '191',
'identity_percentage' => '31.94',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '1e-19',
'bit_score' => '91.7',
'alignment_length' => '260',
'identity_percentage' => '27.69',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '2e-19',
'bit_score' => '94.4',
'alignment_length' => '299',
'identity_percentage' => '28.43',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '6e-19',
'bit_score' => '93.6',
'alignment_length' => '172',
'identity_percentage' => '33.72',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '8e-19',
'bit_score' => '92.4',
'alignment_length' => '180',
'identity_percentage' => '31.67',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '8e-19',
'bit_score' => '91.7',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-18',
'bit_score' => '89.0',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '1e-17',
'bit_score' => '89.0',
'alignment_length' => '342',
'identity_percentage' => '26.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '1e-17',
'bit_score' => '88.6',
'alignment_length' => '276',
'identity_percentage' => '28.62',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '1e-17',
'bit_score' => '86.3',
'alignment_length' => '271',
'identity_percentage' => '28.41',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '3e-17',
'bit_score' => '88.2',
'alignment_length' => '202',
'identity_percentage' => '30.20',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-16',
'bit_score' => '83.6',
'alignment_length' => '254',
'identity_percentage' => '27.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-16',
'bit_score' => '85.9',
'alignment_length' => '202',
'identity_percentage' => '30.69',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-16',
'bit_score' => '85.1',
'alignment_length' => '190',
'identity_percentage' => '29.47',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '3e-16',
'bit_score' => '84.7',
'alignment_length' => '253',
'identity_percentage' => '29.64',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '4e-16',
'bit_score' => '82.8',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000110060' => array(
'gene_id' => 'ENSG00000110060',
'e_value' => '2e-15',
'bit_score' => '82.0',
'alignment_length' => '361',
'identity_percentage' => '25.48',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '3e-15',
'bit_score' => '82.0',
'alignment_length' => '271',
'identity_percentage' => '28.04',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '196',
'identity_percentage' => '27.55',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '155',
'identity_percentage' => '33.55',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'AC00G62260' => array(
'gene_id' => 'AC00G62260',
'e_value' => '3e-14',
'bit_score' => '75.9',
'alignment_length' => '267',
'identity_percentage' => '26.97',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '8e-14',
'bit_score' => '77.0',
'alignment_length' => '319',
'identity_percentage' => '25.71',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '135',
'identity_percentage' => '31.85',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '192',
'identity_percentage' => '26.56',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '1e-12',
'bit_score' => '72.0',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '2e-12',
'bit_score' => '72.4',
'alignment_length' => '297',
'identity_percentage' => '26.94',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '5e-12',
'bit_score' => '70.9',
'alignment_length' => '270',
'identity_percentage' => '26.67',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '268',
'identity_percentage' => '25.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '239',
'identity_percentage' => '27.62',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '3e-11',
'bit_score' => '68.6',
'alignment_length' => '301',
'identity_percentage' => '25.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '282',
'identity_percentage' => '23.76',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '2e-10',
'bit_score' => '66.2',
'alignment_length' => '263',
'identity_percentage' => '24.71',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '4e-10',
'bit_score' => '64.3',
'alignment_length' => '231',
'identity_percentage' => '27.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'gsu125160' => array(
'gene_id' => 'gsu125160',
'e_value' => '5e-10',
'bit_score' => '65.1',
'alignment_length' => '272',
'identity_percentage' => '26.84',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'OT_20G00610' => array(
'gene_id' => 'OT_20G00610',
'e_value' => '6e-10',
'bit_score' => '63.9',
'alignment_length' => '299',
'identity_percentage' => '25.75',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '2e-09',
'bit_score' => '62.0',
'alignment_length' => '284',
'identity_percentage' => '26.06',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '3e-09',
'bit_score' => '62.4',
'alignment_length' => '294',
'identity_percentage' => '23.47',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'CR06G11620' => array(
'gene_id' => 'CR06G11620',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '174',
'identity_percentage' => '24.14',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_010G02180' => array(
'gene_id' => 'CNC64A_010G02180',
'e_value' => '2e-08',
'bit_score' => '60.5',
'alignment_length' => '158',
'identity_percentage' => '30.38',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CR13G06690' => array(
'gene_id' => 'CR13G06690',
'e_value' => '3e-08',
'bit_score' => '59.7',
'alignment_length' => '234',
'identity_percentage' => '23.93',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '3e-08',
'bit_score' => '58.2',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OL19G00580' => array(
'gene_id' => 'OL19G00580',
'e_value' => '1e-07',
'bit_score' => '56.6',
'alignment_length' => '270',
'identity_percentage' => '25.56',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PTI_07G03920' => array(
'gene_id' => 'PTI_07G03920',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '78',
'identity_percentage' => '39.74',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'OM_19G00710' => array(
'gene_id' => 'OM_19G00710',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '277',
'identity_percentage' => '25.27',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '3e-07',
'bit_score' => '56.6',
'alignment_length' => '227',
'identity_percentage' => '23.79',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G88410' => array(
'gene_id' => 'VC00G88410',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '338',
'identity_percentage' => '25.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'OS05G19954' => array(
'gene_id' => 'OS05G19954',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '268',
'identity_percentage' => '22.39',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'MP03G02190' => array(
'gene_id' => 'MP03G02190',
'e_value' => '7e-07',
'bit_score' => '55.5',
'alignment_length' => '84',
'identity_percentage' => '39.29',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'PP00213G00560' => array(
'gene_id' => 'PP00213G00560',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '75',
'identity_percentage' => '42.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'emh684270' => array(
'gene_id' => 'emh684270',
'e_value' => '2e-06',
'bit_score' => '50.8',
'alignment_length' => '78',
'identity_percentage' => '42.31',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0034703' => array(
'gene_id' => 'FBgn0034703',
'e_value' => '2e-06',
'bit_score' => '53.5',
'alignment_length' => '308',
'identity_percentage' => '23.70',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'AT3G06950' => array(
'gene_id' => 'AT3G06950',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '287',
'identity_percentage' => '24.39',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '87',
'identity_percentage' => '29.89',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00045G00930' => array(
'gene_id' => 'ATR_00045G00930',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '258',
'identity_percentage' => '24.42',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00025G02700' => array(
'gene_id' => 'ATR_00025G02700',
'e_value' => '8e-06',
'bit_score' => '51.6',
'alignment_length' => '155',
'identity_percentage' => '26.45',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000110060',
(int) 2 => 'ENSG00000169972'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'drm' => array(
(int) 0 => 'FBgn0038811',
(int) 1 => 'FBgn0034703'
),
'cel' => array(
(int) 0 => 'WBGene00004248'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470',
(int) 3 => 'OM_19G00710'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670',
(int) 3 => 'MP03G02190'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL15G02230',
(int) 2 => 'OL09G01900',
(int) 3 => 'OL19G00580'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490',
(int) 2 => 'gsu125160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630',
(int) 2 => 'OT_20G00610'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980',
(int) 4 => 'PP00213G00560'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610',
(int) 1 => 'PTI_07G03920'
),
'scp' => array(
(int) 0 => 'SPCC16C4.06c',
(int) 1 => 'SPCC126.03',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320',
(int) 3 => 'AT3G06950'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090',
(int) 3 => 'ATR_00045G00930',
(int) 4 => 'ATR_00025G02700'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G62260',
(int) 2 => 'AC00G67180'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440',
(int) 3 => 'OS05G19954'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970',
(int) 3 => 'CR06G11620',
(int) 4 => 'CR13G06690'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840',
(int) 1 => 'VC00G88410'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_010G02180'
),
'emh' => array(
(int) 0 => 'emh684270'
)
),
'gene_id' => 'ENSG00000177192',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSG00000177192',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'BPRRCC1105_12G00350',
'gf_placeholder' => 'HOM03P010647',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSG00000177192' => array(
'gene_id' => 'ENSG00000177192',
'e_value' => '0.0',
'bit_score' => '890',
'alignment_length' => '428',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ENSMUSG00000029507' => array(
'gene_id' => 'ENSMUSG00000029507',
'e_value' => '0.0',
'bit_score' => '713',
'alignment_length' => '440',
'identity_percentage' => '81.36',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FBgn0038811' => array(
'gene_id' => 'FBgn0038811',
'e_value' => '2e-101',
'bit_score' => '316',
'alignment_length' => '321',
'identity_percentage' => '48.60',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'WBGene00004248' => array(
'gene_id' => 'WBGene00004248',
'e_value' => '1e-75',
'bit_score' => '248',
'alignment_length' => '350',
'identity_percentage' => '39.14',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OM_18G01430' => array(
'gene_id' => 'OM_18G01430',
'e_value' => '6e-75',
'bit_score' => '248',
'alignment_length' => '351',
'identity_percentage' => '41.60',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MP15G03100' => array(
'gene_id' => 'MP15G03100',
'e_value' => '3e-74',
'bit_score' => '250',
'alignment_length' => '365',
'identity_percentage' => '38.90',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OL17G00770' => array(
'gene_id' => 'OL17G00770',
'e_value' => '7e-74',
'bit_score' => '240',
'alignment_length' => '312',
'identity_percentage' => '43.27',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'MRCC299_13G04580' => array(
'gene_id' => 'MRCC299_13G04580',
'e_value' => '1e-72',
'bit_score' => '236',
'alignment_length' => '321',
'identity_percentage' => '40.50',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G80280' => array(
'gene_id' => 'CV00G80280',
'e_value' => '3e-72',
'bit_score' => '236',
'alignment_length' => '317',
'identity_percentage' => '42.90',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'phs166180' => array(
'gene_id' => 'phs166180',
'e_value' => '2e-71',
'bit_score' => '239',
'alignment_length' => '442',
'identity_percentage' => '35.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ORCC809_17G00710' => array(
'gene_id' => 'ORCC809_17G00710',
'e_value' => '3e-70',
'bit_score' => '234',
'alignment_length' => '323',
'identity_percentage' => '40.87',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PI00G26930' => array(
'gene_id' => 'PI00G26930',
'e_value' => '1e-68',
'bit_score' => '230',
'alignment_length' => '385',
'identity_percentage' => '36.10',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'HE0000G05960' => array(
'gene_id' => 'HE0000G05960',
'e_value' => '1e-67',
'bit_score' => '229',
'alignment_length' => '458',
'identity_percentage' => '34.72',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'gsu35930' => array(
'gene_id' => 'gsu35930',
'e_value' => '7e-65',
'bit_score' => '229',
'alignment_length' => '324',
'identity_percentage' => '39.20',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'RCC4223.01g05860' => array(
'gene_id' => 'RCC4223.01g05860',
'e_value' => '7e-63',
'bit_score' => '215',
'alignment_length' => '361',
'identity_percentage' => '36.84',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'BPRRCC1105_09G01390' => array(
'gene_id' => 'BPRRCC1105_09G01390',
'e_value' => '2e-60',
'bit_score' => '213',
'alignment_length' => '361',
'identity_percentage' => '36.57',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OT_18G00720' => array(
'gene_id' => 'OT_18G00720',
'e_value' => '7e-57',
'bit_score' => '199',
'alignment_length' => '320',
'identity_percentage' => '37.19',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'DDB_G0290987' => array(
'gene_id' => 'DDB_G0290987',
'e_value' => '3e-55',
'bit_score' => '198',
'alignment_length' => '356',
'identity_percentage' => '34.27',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr184280' => array(
'gene_id' => 'ccr184280',
'e_value' => '1e-54',
'bit_score' => '199',
'alignment_length' => '323',
'identity_percentage' => '36.84',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ccr146200' => array(
'gene_id' => 'ccr146200',
'e_value' => '2e-53',
'bit_score' => '189',
'alignment_length' => '347',
'identity_percentage' => '35.45',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AA0023G00610' => array(
'gene_id' => 'AA0023G00610',
'e_value' => '4e-46',
'bit_score' => '165',
'alignment_length' => '236',
'identity_percentage' => '39.83',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00177G00480' => array(
'gene_id' => 'PP00177G00480',
'e_value' => '3e-44',
'bit_score' => '162',
'alignment_length' => '311',
'identity_percentage' => '36.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte314750' => array(
'gene_id' => 'pte314750',
'e_value' => '2e-43',
'bit_score' => '161',
'alignment_length' => '344',
'identity_percentage' => '31.10',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'TP04G04890' => array(
'gene_id' => 'TP04G04890',
'e_value' => '1e-39',
'bit_score' => '150',
'alignment_length' => '325',
'identity_percentage' => '30.46',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YGL063W' => array(
'gene_id' => 'YGL063W',
'e_value' => '1e-38',
'bit_score' => '148',
'alignment_length' => '364',
'identity_percentage' => '31.32',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'FC005G04340' => array(
'gene_id' => 'FC005G04340',
'e_value' => '4e-38',
'bit_score' => '147',
'alignment_length' => '373',
'identity_percentage' => '28.69',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PTI_11G00610' => array(
'gene_id' => 'PTI_11G00610',
'e_value' => '9e-38',
'bit_score' => '148',
'alignment_length' => '383',
'identity_percentage' => '29.77',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC16C4.06c' => array(
'gene_id' => 'SPCC16C4.06c',
'e_value' => '2e-35',
'bit_score' => '140',
'alignment_length' => '336',
'identity_percentage' => '27.68',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G20370' => array(
'gene_id' => 'AT1G20370',
'e_value' => '5e-35',
'bit_score' => '140',
'alignment_length' => '171',
'identity_percentage' => '40.94',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ATR_00001G01760' => array(
'gene_id' => 'ATR_00001G01760',
'e_value' => '7e-35',
'bit_score' => '140',
'alignment_length' => '201',
'identity_percentage' => '38.81',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'PP00297G00230' => array(
'gene_id' => 'PP00297G00230',
'e_value' => '3e-34',
'bit_score' => '137',
'alignment_length' => '167',
'identity_percentage' => '41.32',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AC00G75990' => array(
'gene_id' => 'AC00G75990',
'e_value' => '4e-33',
'bit_score' => '134',
'alignment_length' => '179',
'identity_percentage' => '40.22',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'OS02G44810' => array(
'gene_id' => 'OS02G44810',
'e_value' => '7e-33',
'bit_score' => '134',
'alignment_length' => '200',
'identity_percentage' => '34.50',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AT1G76120' => array(
'gene_id' => 'AT1G76120',
'e_value' => '8e-33',
'bit_score' => '133',
'alignment_length' => '171',
'identity_percentage' => '38.60',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'pte449950' => array(
'gene_id' => 'pte449950',
'e_value' => '3e-32',
'bit_score' => '129',
'alignment_length' => '249',
'identity_percentage' => '32.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPCC126.03' => array(
'gene_id' => 'SPCC126.03',
'e_value' => '5e-32',
'bit_score' => '131',
'alignment_length' => '169',
'identity_percentage' => '42.01',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'YPL212C' => array(
'gene_id' => 'YPL212C',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '179',
'identity_percentage' => '37.99',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'AP00G14720' => array(
'gene_id' => 'AP00G14720',
'e_value' => '1e-31',
'bit_score' => '129',
'alignment_length' => '131',
'identity_percentage' => '51.15',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'Naga_100165g3' => array(
'gene_id' => 'Naga_100165g3',
'e_value' => '1e-27',
'bit_score' => '119',
'alignment_length' => '242',
'identity_percentage' => '30.17',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'SPBC887.11' => array(
'gene_id' => 'SPBC887.11',
'e_value' => '6e-27',
'bit_score' => '115',
'alignment_length' => '201',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CV00G17870' => array(
'gene_id' => 'CV00G17870',
'e_value' => '5e-25',
'bit_score' => '108',
'alignment_length' => '284',
'identity_percentage' => '28.87',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'gsu101490' => array(
'gene_id' => 'gsu101490',
'e_value' => '8e-25',
'bit_score' => '110',
'alignment_length' => '203',
'identity_percentage' => '33.50',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ES0000G01910' => array(
'gene_id' => 'ES0000G01910',
'e_value' => '9e-25',
'bit_score' => '110',
'alignment_length' => '135',
'identity_percentage' => '41.48',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'ES0126G00380' => array(
'gene_id' => 'ES0126G00380',
'e_value' => '4e-24',
'bit_score' => '108',
'alignment_length' => '186',
'identity_percentage' => '31.72',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'CR03G02620' => array(
'gene_id' => 'CR03G02620',
'e_value' => '1e-22',
'bit_score' => '104',
'alignment_length' => '184',
'identity_percentage' => '32.07',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'Naga_100009g102' => array(
'gene_id' => 'Naga_100009g102',
'e_value' => '2e-22',
'bit_score' => '103',
'alignment_length' => '188',
'identity_percentage' => '35.64',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P070109'
)
),
'CR16G00980' => array(
'gene_id' => 'CR16G00980',
'e_value' => '4e-22',
'bit_score' => '102',
'alignment_length' => '207',
'identity_percentage' => '31.40',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'OT_16G02630' => array(
'gene_id' => 'OT_16G02630',
'e_value' => '7e-22',
'bit_score' => '101',
'alignment_length' => '229',
'identity_percentage' => '31.88',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'MRCC299_15G00510' => array(
'gene_id' => 'MRCC299_15G00510',
'e_value' => '5e-21',
'bit_score' => '99.4',
'alignment_length' => '196',
'identity_percentage' => '32.14',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'DDB_G0281619' => array(
'gene_id' => 'DDB_G0281619',
'e_value' => '7e-21',
'bit_score' => '98.6',
'alignment_length' => '411',
'identity_percentage' => '23.36',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'OM_10G01880' => array(
'gene_id' => 'OM_10G01880',
'e_value' => '8e-21',
'bit_score' => '97.8',
'alignment_length' => '283',
'identity_percentage' => '28.98',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PP00165G00620' => array(
'gene_id' => 'PP00165G00620',
'e_value' => '3e-20',
'bit_score' => '97.1',
'alignment_length' => '197',
'identity_percentage' => '29.95',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OS03G21980' => array(
'gene_id' => 'OS03G21980',
'e_value' => '5e-20',
'bit_score' => '95.9',
'alignment_length' => '185',
'identity_percentage' => '31.35',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PI00G05850' => array(
'gene_id' => 'PI00G05850',
'e_value' => '1e-19',
'bit_score' => '94.7',
'alignment_length' => '260',
'identity_percentage' => '30.77',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OL15G02230' => array(
'gene_id' => 'OL15G02230',
'e_value' => '1e-19',
'bit_score' => '95.1',
'alignment_length' => '191',
'identity_percentage' => '31.94',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'OL09G01900' => array(
'gene_id' => 'OL09G01900',
'e_value' => '1e-19',
'bit_score' => '91.7',
'alignment_length' => '260',
'identity_percentage' => '27.69',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'SPAC25B8.05' => array(
'gene_id' => 'SPAC25B8.05',
'e_value' => '2e-19',
'bit_score' => '94.4',
'alignment_length' => '299',
'identity_percentage' => '28.43',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'phs60900' => array(
'gene_id' => 'phs60900',
'e_value' => '6e-19',
'bit_score' => '93.6',
'alignment_length' => '172',
'identity_percentage' => '33.72',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000764',
'ORTHOFAM' => 'ORTHO03P000662'
)
),
'AT2G30320' => array(
'gene_id' => 'AT2G30320',
'e_value' => '8e-19',
'bit_score' => '92.4',
'alignment_length' => '180',
'identity_percentage' => '31.67',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'RCC4223.07g02090' => array(
'gene_id' => 'RCC4223.07g02090',
'e_value' => '8e-19',
'bit_score' => '91.7',
'alignment_length' => '250',
'identity_percentage' => '30.80',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ORCC809_09G04140' => array(
'gene_id' => 'ORCC809_09G04140',
'e_value' => '1e-18',
'bit_score' => '89.0',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'ATR_00010G03470' => array(
'gene_id' => 'ATR_00010G03470',
'e_value' => '1e-17',
'bit_score' => '89.0',
'alignment_length' => '342',
'identity_percentage' => '26.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'pte746660' => array(
'gene_id' => 'pte746660',
'e_value' => '1e-17',
'bit_score' => '88.6',
'alignment_length' => '276',
'identity_percentage' => '28.62',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AA0009G03070' => array(
'gene_id' => 'AA0009G03070',
'e_value' => '1e-17',
'bit_score' => '86.3',
'alignment_length' => '271',
'identity_percentage' => '28.41',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CM08G02510' => array(
'gene_id' => 'CM08G02510',
'e_value' => '3e-17',
'bit_score' => '88.2',
'alignment_length' => '202',
'identity_percentage' => '30.20',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CV00G07950' => array(
'gene_id' => 'CV00G07950',
'e_value' => '1e-16',
'bit_score' => '83.6',
'alignment_length' => '254',
'identity_percentage' => '27.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'MP14G03070' => array(
'gene_id' => 'MP14G03070',
'e_value' => '1e-16',
'bit_score' => '85.9',
'alignment_length' => '202',
'identity_percentage' => '30.69',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'PI00G23970' => array(
'gene_id' => 'PI00G23970',
'e_value' => '2e-16',
'bit_score' => '85.1',
'alignment_length' => '190',
'identity_percentage' => '29.47',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ORCC809_15G00490' => array(
'gene_id' => 'ORCC809_15G00490',
'e_value' => '3e-16',
'bit_score' => '84.7',
'alignment_length' => '253',
'identity_percentage' => '29.64',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CNC64A_201G00010' => array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '4e-16',
'bit_score' => '82.8',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ENSG00000110060' => array(
'gene_id' => 'ENSG00000110060',
'e_value' => '2e-15',
'bit_score' => '82.0',
'alignment_length' => '361',
'identity_percentage' => '25.48',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OM_15G00470' => array(
'gene_id' => 'OM_15G00470',
'e_value' => '3e-15',
'bit_score' => '82.0',
'alignment_length' => '271',
'identity_percentage' => '28.04',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'RCC4223.04g01700' => array(
'gene_id' => 'RCC4223.04g01700',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '196',
'identity_percentage' => '27.55',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'CR02G02970' => array(
'gene_id' => 'CR02G02970',
'e_value' => '5e-15',
'bit_score' => '80.9',
'alignment_length' => '155',
'identity_percentage' => '33.55',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AC00G62260' => array(
'gene_id' => 'AC00G62260',
'e_value' => '3e-14',
'bit_score' => '75.9',
'alignment_length' => '267',
'identity_percentage' => '26.97',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CM11G00440' => array(
'gene_id' => 'CM11G00440',
'e_value' => '8e-14',
'bit_score' => '77.0',
'alignment_length' => '319',
'identity_percentage' => '25.71',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'VC00G108840' => array(
'gene_id' => 'VC00G108840',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '135',
'identity_percentage' => '31.85',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P063568'
)
),
'DDB_G0286567' => array(
'gene_id' => 'DDB_G0286567',
'e_value' => '6e-13',
'bit_score' => '74.7',
'alignment_length' => '192',
'identity_percentage' => '26.56',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P047276'
)
),
'MRCC299_14G01780' => array(
'gene_id' => 'MRCC299_14G01780',
'e_value' => '1e-12',
'bit_score' => '72.0',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'FC001G13250' => array(
'gene_id' => 'FC001G13250',
'e_value' => '2e-12',
'bit_score' => '72.4',
'alignment_length' => '297',
'identity_percentage' => '26.94',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P019199',
'ORTHOFAM' => 'ORTHO03P025037'
)
),
'MP15G00670' => array(
'gene_id' => 'MP15G00670',
'e_value' => '5e-12',
'bit_score' => '70.9',
'alignment_length' => '270',
'identity_percentage' => '26.67',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'OS03G26440' => array(
'gene_id' => 'OS03G26440',
'e_value' => '9e-12',
'bit_score' => '70.5',
'alignment_length' => '268',
'identity_percentage' => '25.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AP00G21680' => array(
'gene_id' => 'AP00G21680',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '239',
'identity_percentage' => '27.62',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PP00027G00980' => array(
'gene_id' => 'PP00027G00980',
'e_value' => '3e-11',
'bit_score' => '68.6',
'alignment_length' => '301',
'identity_percentage' => '25.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'AA0004G00820' => array(
'gene_id' => 'AA0004G00820',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '282',
'identity_percentage' => '23.76',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P074791'
)
),
'YFL001W' => array(
'gene_id' => 'YFL001W',
'e_value' => '2e-10',
'bit_score' => '66.2',
'alignment_length' => '263',
'identity_percentage' => '24.71',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CV00G03750' => array(
'gene_id' => 'CV00G03750',
'e_value' => '4e-10',
'bit_score' => '64.3',
'alignment_length' => '231',
'identity_percentage' => '27.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'gsu125160' => array(
'gene_id' => 'gsu125160',
'e_value' => '5e-10',
'bit_score' => '65.1',
'alignment_length' => '272',
'identity_percentage' => '26.84',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OT_20G00610' => array(
'gene_id' => 'OT_20G00610',
'e_value' => '6e-10',
'bit_score' => '63.9',
'alignment_length' => '299',
'identity_percentage' => '25.75',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ENSG00000169972' => array(
'gene_id' => 'ENSG00000169972',
'e_value' => '2e-09',
'bit_score' => '62.0',
'alignment_length' => '284',
'identity_percentage' => '26.06',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P005136',
'ORTHOFAM' => 'ORTHO03P004812'
)
),
'Naga_100003g47' => array(
'gene_id' => 'Naga_100003g47',
'e_value' => '3e-09',
'bit_score' => '62.4',
'alignment_length' => '294',
'identity_percentage' => '23.47',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'CR06G11620' => array(
'gene_id' => 'CR06G11620',
'e_value' => '1e-08',
'bit_score' => '60.8',
'alignment_length' => '174',
'identity_percentage' => '24.14',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P000943'
)
),
'CNC64A_010G02180' => array(
'gene_id' => 'CNC64A_010G02180',
'e_value' => '2e-08',
'bit_score' => '60.5',
'alignment_length' => '158',
'identity_percentage' => '30.38',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'CR13G06690' => array(
'gene_id' => 'CR13G06690',
'e_value' => '3e-08',
'bit_score' => '59.7',
'alignment_length' => '234',
'identity_percentage' => '23.93',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'AC00G67180' => array(
'gene_id' => 'AC00G67180',
'e_value' => '3e-08',
'bit_score' => '58.2',
'alignment_length' => '261',
'identity_percentage' => '26.82',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'OL19G00580' => array(
'gene_id' => 'OL19G00580',
'e_value' => '1e-07',
'bit_score' => '56.6',
'alignment_length' => '270',
'identity_percentage' => '25.56',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'PTI_07G03920' => array(
'gene_id' => 'PTI_07G03920',
'e_value' => '2e-07',
'bit_score' => '57.0',
'alignment_length' => '78',
'identity_percentage' => '39.74',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'OM_19G00710' => array(
'gene_id' => 'OM_19G00710',
'e_value' => '3e-07',
'bit_score' => '55.8',
'alignment_length' => '277',
'identity_percentage' => '25.27',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ES0203G00310' => array(
'gene_id' => 'ES0203G00310',
'e_value' => '3e-07',
'bit_score' => '56.6',
'alignment_length' => '227',
'identity_percentage' => '23.79',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P020884',
'ORTHOFAM' => 'ORTHO03P029537'
)
),
'VC00G88410' => array(
'gene_id' => 'VC00G88410',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '338',
'identity_percentage' => '25.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P063632'
)
),
'OS05G19954' => array(
'gene_id' => 'OS05G19954',
'e_value' => '6e-07',
'bit_score' => '55.1',
'alignment_length' => '268',
'identity_percentage' => '22.39',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'MP03G02190' => array(
'gene_id' => 'MP03G02190',
'e_value' => '7e-07',
'bit_score' => '55.5',
'alignment_length' => '84',
'identity_percentage' => '39.29',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'PP00213G00560' => array(
'gene_id' => 'PP00213G00560',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '75',
'identity_percentage' => '42.67',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'emh684270' => array(
'gene_id' => 'emh684270',
'e_value' => '2e-06',
'bit_score' => '50.8',
'alignment_length' => '78',
'identity_percentage' => '42.31',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'FBgn0034703' => array(
'gene_id' => 'FBgn0034703',
'e_value' => '2e-06',
'bit_score' => '53.5',
'alignment_length' => '308',
'identity_percentage' => '23.70',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P002286',
'ORTHOFAM' => 'ORTHO03P001711'
)
),
'AT3G06950' => array(
'gene_id' => 'AT3G06950',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '287',
'identity_percentage' => '24.39',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ATR_00077G00090' => array(
'gene_id' => 'ATR_00077G00090',
'e_value' => '3e-06',
'bit_score' => '52.8',
'alignment_length' => '87',
'identity_percentage' => '29.89',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P009223',
'ORTHOFAM' => 'ORTHO03P004585'
)
),
'ATR_00045G00930' => array(
'gene_id' => 'ATR_00045G00930',
'e_value' => '4e-06',
'bit_score' => '52.4',
'alignment_length' => '258',
'identity_percentage' => '24.42',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P002698',
'ORTHOFAM' => 'ORTHO03P002607'
)
),
'ATR_00025G02700' => array(
'gene_id' => 'ATR_00025G02700',
'e_value' => '8e-06',
'bit_score' => '51.6',
'alignment_length' => '155',
'identity_percentage' => '26.45',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P005953',
'ORTHOFAM' => 'ORTHO03P016137'
)
)
)
$similarity_hits_species = array(
'hom' => array(
(int) 0 => 'ENSG00000177192',
(int) 1 => 'ENSG00000110060',
(int) 2 => 'ENSG00000169972'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000029507'
),
'drm' => array(
(int) 0 => 'FBgn0038811',
(int) 1 => 'FBgn0034703'
),
'cel' => array(
(int) 0 => 'WBGene00004248'
),
'ome' => array(
(int) 0 => 'OM_18G01430',
(int) 1 => 'OM_10G01880',
(int) 2 => 'OM_15G00470',
(int) 3 => 'OM_19G00710'
),
'mpu' => array(
(int) 0 => 'MP15G03100',
(int) 1 => 'MP14G03070',
(int) 2 => 'MP15G00670',
(int) 3 => 'MP03G02190'
),
'olu' => array(
(int) 0 => 'OL17G00770',
(int) 1 => 'OL15G02230',
(int) 2 => 'OL09G01900',
(int) 3 => 'OL19G00580'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_13G04580',
(int) 1 => 'MRCC299_15G00510',
(int) 2 => 'MRCC299_14G01780'
),
'cvu' => array(
(int) 0 => 'CV00G80280',
(int) 1 => 'CV00G17870',
(int) 2 => 'CV00G07950',
(int) 3 => 'CV00G03750'
),
'phs' => array(
(int) 0 => 'phs166180',
(int) 1 => 'phs60900'
),
'orcc809' => array(
(int) 0 => 'ORCC809_17G00710',
(int) 1 => 'ORCC809_09G04140',
(int) 2 => 'ORCC809_15G00490'
),
'pse3' => array(
(int) 0 => 'PI00G26930',
(int) 1 => 'PI00G05850',
(int) 2 => 'PI00G23970'
),
'hsp' => array(
(int) 0 => 'HE0000G05960'
),
'gsu' => array(
(int) 0 => 'gsu35930',
(int) 1 => 'gsu101490',
(int) 2 => 'gsu125160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.01g05860',
(int) 1 => 'RCC4223.07g02090',
(int) 2 => 'RCC4223.04g01700'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_09G01390'
),
'ota' => array(
(int) 0 => 'OT_18G00720',
(int) 1 => 'OT_16G02630',
(int) 2 => 'OT_20G00610'
),
'ddi' => array(
(int) 0 => 'DDB_G0290987',
(int) 1 => 'DDB_G0281619',
(int) 2 => 'DDB_G0286567'
),
'ccr' => array(
(int) 0 => 'ccr184280',
(int) 1 => 'ccr146200'
),
'aan' => array(
(int) 0 => 'AA0023G00610',
(int) 1 => 'AA0009G03070',
(int) 2 => 'AA0004G00820'
),
'ppa' => array(
(int) 0 => 'PP00177G00480',
(int) 1 => 'PP00297G00230',
(int) 2 => 'PP00165G00620',
(int) 3 => 'PP00027G00980',
(int) 4 => 'PP00213G00560'
),
'pte' => array(
(int) 0 => 'pte314750',
(int) 1 => 'pte449950',
(int) 2 => 'pte746660'
),
'tps' => array(
(int) 0 => 'TP04G04890'
),
'sac' => array(
(int) 0 => 'YGL063W',
(int) 1 => 'YPL212C',
(int) 2 => 'YFL001W'
),
'fcy' => array(
(int) 0 => 'FC005G04340',
(int) 1 => 'FC001G13250'
),
'ptri' => array(
(int) 0 => 'PTI_11G00610',
(int) 1 => 'PTI_07G03920'
),
'scp' => array(
(int) 0 => 'SPCC16C4.06c',
(int) 1 => 'SPCC126.03',
(int) 2 => 'SPBC887.11',
(int) 3 => 'SPAC25B8.05'
),
'ath' => array(
(int) 0 => 'AT1G20370',
(int) 1 => 'AT1G76120',
(int) 2 => 'AT2G30320',
(int) 3 => 'AT3G06950'
),
'atr' => array(
(int) 0 => 'ATR_00001G01760',
(int) 1 => 'ATR_00010G03470',
(int) 2 => 'ATR_00077G00090',
(int) 3 => 'ATR_00045G00930',
(int) 4 => 'ATR_00025G02700'
),
'acg' => array(
(int) 0 => 'AC00G75990',
(int) 1 => 'AC00G62260',
(int) 2 => 'AC00G67180'
),
'osa' => array(
(int) 0 => 'OS02G44810',
(int) 1 => 'OS03G21980',
(int) 2 => 'OS03G26440',
(int) 3 => 'OS05G19954'
),
'apr' => array(
(int) 0 => 'AP00G14720',
(int) 1 => 'AP00G21680'
),
'nga' => array(
(int) 0 => 'Naga_100165g3',
(int) 1 => 'Naga_100009g102',
(int) 2 => 'Naga_100003g47'
),
'esi' => array(
(int) 0 => 'ES0000G01910',
(int) 1 => 'ES0126G00380',
(int) 2 => 'ES0203G00310'
),
'cre' => array(
(int) 0 => 'CR03G02620',
(int) 1 => 'CR16G00980',
(int) 2 => 'CR02G02970',
(int) 3 => 'CR06G11620',
(int) 4 => 'CR13G06690'
),
'cme' => array(
(int) 0 => 'CM08G02510',
(int) 1 => 'CM11G00440'
),
'vca' => array(
(int) 0 => 'VC00G108840',
(int) 1 => 'VC00G88410'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_010G02180'
),
'emh' => array(
(int) 0 => 'emh684270'
)
)
$gene_id = 'ENSG00000177192'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSG00000177192'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'BPRRCC1105_12G00350'
$gf_placeholder = 'HOM03P010647'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_201G00010',
'e_value' => '4e-16',
'bit_score' => '82.8',
'alignment_length' => '303',
'identity_percentage' => '25.08',
'gf' => array(
'HOMFAM' => 'HOM03P001088',
'ORTHOFAM' => 'ORTHO03P004585'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_201G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
4e-16 |
82.8 |
303 |
25.08 |
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench