|
CNC64A_162G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSG00000169340' => array(
'gene_id' => 'ENSG00000169340',
'e_value' => '0.0',
'bit_score' => '1188',
'alignment_length' => '585',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000030968' => array(
'gene_id' => 'ENSMUSG00000030968',
'e_value' => '0.0',
'bit_score' => '815',
'alignment_length' => '597',
'identity_percentage' => '68.84',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000185624' => array(
'gene_id' => 'ENSG00000185624',
'e_value' => '1e-82',
'bit_score' => '274',
'alignment_length' => '453',
'identity_percentage' => '32.67',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00003963' => array(
'gene_id' => 'WBGene00003963',
'e_value' => '9e-80',
'bit_score' => '266',
'alignment_length' => '460',
'identity_percentage' => '31.96',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0014002' => array(
'gene_id' => 'FBgn0014002',
'e_value' => '9e-74',
'bit_score' => '250',
'alignment_length' => '467',
'identity_percentage' => '28.69',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000024184' => array(
'gene_id' => 'ENSMUSG00000024184',
'e_value' => '6e-73',
'bit_score' => '249',
'alignment_length' => '460',
'identity_percentage' => '32.61',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00003962' => array(
'gene_id' => 'WBGene00003962',
'e_value' => '6e-54',
'bit_score' => '196',
'alignment_length' => '464',
'identity_percentage' => '25.86',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'VC00G34650' => array(
'gene_id' => 'VC00G34650',
'e_value' => '3e-41',
'bit_score' => '160',
'alignment_length' => '448',
'identity_percentage' => '25.22',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'PP00422G00050' => array(
'gene_id' => 'PP00422G00050',
'e_value' => '4e-39',
'bit_score' => '155',
'alignment_length' => '477',
'identity_percentage' => '25.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00003G01330' => array(
'gene_id' => 'PP00003G01330',
'e_value' => '1e-38',
'bit_score' => '153',
'alignment_length' => '468',
'identity_percentage' => '26.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte30590' => array(
'gene_id' => 'pte30590',
'e_value' => '1e-37',
'bit_score' => '149',
'alignment_length' => '480',
'identity_percentage' => '24.38',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1F5.02' => array(
'gene_id' => 'SPAC1F5.02',
'e_value' => '1e-37',
'bit_score' => '149',
'alignment_length' => '458',
'identity_percentage' => '28.38',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'CR02G03440' => array(
'gene_id' => 'CR02G03440',
'e_value' => '3e-37',
'bit_score' => '148',
'alignment_length' => '467',
'identity_percentage' => '24.20',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'PP00039G00940' => array(
'gene_id' => 'PP00039G00940',
'e_value' => '3e-35',
'bit_score' => '142',
'alignment_length' => '464',
'identity_percentage' => '25.65',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00083G01260' => array(
'gene_id' => 'PP00083G01260',
'e_value' => '4e-35',
'bit_score' => '142',
'alignment_length' => '515',
'identity_percentage' => '27.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00407G00290' => array(
'gene_id' => 'PP00407G00290',
'e_value' => '2e-34',
'bit_score' => '140',
'alignment_length' => '465',
'identity_percentage' => '25.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AC00G57770' => array(
'gene_id' => 'AC00G57770',
'e_value' => '2e-34',
'bit_score' => '140',
'alignment_length' => '455',
'identity_percentage' => '25.27',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AT5G60640' => array(
'gene_id' => 'AT5G60640',
'e_value' => '2e-33',
'bit_score' => '138',
'alignment_length' => '465',
'identity_percentage' => '24.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00004G01260' => array(
'gene_id' => 'PP00004G01260',
'e_value' => '3e-33',
'bit_score' => '138',
'alignment_length' => '443',
'identity_percentage' => '25.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CM03G01810' => array(
'gene_id' => 'CM03G01810',
'e_value' => '3e-33',
'bit_score' => '137',
'alignment_length' => '486',
'identity_percentage' => '26.75',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100052g13' => array(
'gene_id' => 'Naga_100052g13',
'e_value' => '4e-33',
'bit_score' => '136',
'alignment_length' => '474',
'identity_percentage' => '23.84',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OS04G35600' => array(
'gene_id' => 'OS04G35600',
'e_value' => '1e-32',
'bit_score' => '135',
'alignment_length' => '497',
'identity_percentage' => '26.76',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT3G54960' => array(
'gene_id' => 'AT3G54960',
'e_value' => '3e-32',
'bit_score' => '134',
'alignment_length' => '444',
'identity_percentage' => '25.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00186G00150' => array(
'gene_id' => 'ATR_00186G00150',
'e_value' => '5e-32',
'bit_score' => '133',
'alignment_length' => '508',
'identity_percentage' => '24.80',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00175G00360' => array(
'gene_id' => 'ATR_00175G00360',
'e_value' => '1e-31',
'bit_score' => '132',
'alignment_length' => '469',
'identity_percentage' => '25.59',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ES0164G00180' => array(
'gene_id' => 'ES0164G00180',
'e_value' => '1e-31',
'bit_score' => '131',
'alignment_length' => '492',
'identity_percentage' => '26.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G31820' => array(
'gene_id' => 'CV00G31820',
'e_value' => '1e-30',
'bit_score' => '129',
'alignment_length' => '472',
'identity_percentage' => '24.79',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS02G01010' => array(
'gene_id' => 'OS02G01010',
'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '487',
'identity_percentage' => '26.08',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000155660' => array(
'gene_id' => 'ENSG00000155660',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '486',
'identity_percentage' => '25.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000025823' => array(
'gene_id' => 'ENSMUSG00000025823',
'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '493',
'identity_percentage' => '25.35',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'AT1G77510' => array(
'gene_id' => 'AT1G77510',
'e_value' => '4e-30',
'bit_score' => '127',
'alignment_length' => '463',
'identity_percentage' => '24.62',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OM_03G02840' => array(
'gene_id' => 'OM_03G02840',
'e_value' => '7e-30',
'bit_score' => '127',
'alignment_length' => '499',
'identity_percentage' => '23.25',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'OL05G02640' => array(
'gene_id' => 'OL05G02640',
'e_value' => '8e-30',
'bit_score' => '125',
'alignment_length' => '453',
'identity_percentage' => '23.18',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PP00122G00030' => array(
'gene_id' => 'PP00122G00030',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '458',
'identity_percentage' => '23.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00077G00280' => array(
'gene_id' => 'PP00077G00280',
'e_value' => '4e-29',
'bit_score' => '125',
'alignment_length' => '433',
'identity_percentage' => '23.79',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_03G03360' => array(
'gene_id' => 'BPRRCC1105_03G03360',
'e_value' => '2e-28',
'bit_score' => '123',
'alignment_length' => '472',
'identity_percentage' => '23.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'OT_05G02710' => array(
'gene_id' => 'OT_05G02710',
'e_value' => '1e-27',
'bit_score' => '120',
'alignment_length' => '462',
'identity_percentage' => '24.89',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'AT1G21750' => array(
'gene_id' => 'AT1G21750',
'e_value' => '2e-27',
'bit_score' => '119',
'alignment_length' => '465',
'identity_percentage' => '23.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00003964' => array(
'gene_id' => 'WBGene00003964',
'e_value' => '4e-27',
'bit_score' => '118',
'alignment_length' => '475',
'identity_percentage' => '24.42',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'OS11G09280' => array(
'gene_id' => 'OS11G09280',
'e_value' => '1e-26',
'bit_score' => '117',
'alignment_length' => '465',
'identity_percentage' => '26.45',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0033663' => array(
'gene_id' => 'FBgn0033663',
'e_value' => '2e-25',
'bit_score' => '114',
'alignment_length' => '468',
'identity_percentage' => '23.93',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'YCL043C' => array(
'gene_id' => 'YCL043C',
'e_value' => '4e-25',
'bit_score' => '113',
'alignment_length' => '475',
'identity_percentage' => '25.68',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00015752' => array(
'gene_id' => 'WBGene00015752',
'e_value' => '6e-25',
'bit_score' => '113',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_05G02600' => array(
'gene_id' => 'ORCC809_05G02600',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '464',
'identity_percentage' => '22.84',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'OS02G34940' => array(
'gene_id' => 'OS02G34940',
'e_value' => '2e-24',
'bit_score' => '111',
'alignment_length' => '443',
'identity_percentage' => '26.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00046G00210' => array(
'gene_id' => 'PP00046G00210',
'e_value' => '3e-24',
'bit_score' => '110',
'alignment_length' => '465',
'identity_percentage' => '24.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.07g00280' => array(
'gene_id' => 'RCC4223.07g00280',
'e_value' => '9e-24',
'bit_score' => '108',
'alignment_length' => '480',
'identity_percentage' => '21.04',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ccr195600' => array(
'gene_id' => 'ccr195600',
'e_value' => '1e-23',
'bit_score' => '108',
'alignment_length' => '473',
'identity_percentage' => '26.00',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'PP00046G00200' => array(
'gene_id' => 'PP00046G00200',
'e_value' => '2e-23',
'bit_score' => '107',
'alignment_length' => '441',
'identity_percentage' => '25.40',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PI00G04410' => array(
'gene_id' => 'PI00G04410',
'e_value' => '4e-23',
'bit_score' => '107',
'alignment_length' => '468',
'identity_percentage' => '22.86',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'MP05G04320' => array(
'gene_id' => 'MP05G04320',
'e_value' => '4e-22',
'bit_score' => '103',
'alignment_length' => '511',
'identity_percentage' => '21.53',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G45590' => array(
'gene_id' => 'HE0000G45590',
'e_value' => '1e-20',
'bit_score' => '100',
'alignment_length' => '475',
'identity_percentage' => '21.89',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0291434' => array(
'gene_id' => 'DDB_G0291434',
'e_value' => '9e-20',
'bit_score' => '96.7',
'alignment_length' => '450',
'identity_percentage' => '22.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00109G00370' => array(
'gene_id' => 'ATR_00109G00370',
'e_value' => '2e-19',
'bit_score' => '95.9',
'alignment_length' => '448',
'identity_percentage' => '20.09',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ccr114860' => array(
'gene_id' => 'ccr114860',
'e_value' => '5e-18',
'bit_score' => '91.3',
'alignment_length' => '493',
'identity_percentage' => '23.33',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'AT1G52260' => array(
'gene_id' => 'AT1G52260',
'e_value' => '3e-17',
'bit_score' => '89.0',
'alignment_length' => '439',
'identity_percentage' => '19.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'pte452030' => array(
'gene_id' => 'pte452030',
'e_value' => '5e-17',
'bit_score' => '88.6',
'alignment_length' => '228',
'identity_percentage' => '25.88',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_005G01330' => array(
'gene_id' => 'CNC64A_005G01330',
'e_value' => '1e-16',
'bit_score' => '87.0',
'alignment_length' => '419',
'identity_percentage' => '22.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'OS06G06790' => array(
'gene_id' => 'OS06G06790',
'e_value' => '2e-16',
'bit_score' => '86.3',
'alignment_length' => '430',
'identity_percentage' => '20.93',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ES0535G00010' => array(
'gene_id' => 'ES0535G00010',
'e_value' => '5e-16',
'bit_score' => '85.9',
'alignment_length' => '149',
'identity_percentage' => '30.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_07G03480' => array(
'gene_id' => 'BPRRCC1105_07G03480',
'e_value' => '6e-16',
'bit_score' => '85.1',
'alignment_length' => '271',
'identity_percentage' => '26.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'PP00210G00500' => array(
'gene_id' => 'PP00210G00500',
'e_value' => '2e-15',
'bit_score' => '83.6',
'alignment_length' => '160',
'identity_percentage' => '30.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_04G03740' => array(
'gene_id' => 'MRCC299_04G03740',
'e_value' => '2e-15',
'bit_score' => '79.3',
'alignment_length' => '186',
'identity_percentage' => '27.42',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'pte151310' => array(
'gene_id' => 'pte151310',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '456',
'identity_percentage' => '21.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte163150' => array(
'gene_id' => 'pte163150',
'e_value' => '6e-15',
'bit_score' => '81.6',
'alignment_length' => '470',
'identity_percentage' => '20.21',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ES0062G00620' => array(
'gene_id' => 'ES0062G00620',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '205',
'identity_percentage' => '27.80',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'pte51030' => array(
'gene_id' => 'pte51030',
'e_value' => '9e-15',
'bit_score' => '81.3',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00014807' => array(
'gene_id' => 'WBGene00014807',
'e_value' => '2e-14',
'bit_score' => '78.6',
'alignment_length' => '228',
'identity_percentage' => '29.39',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'pte94910' => array(
'gene_id' => 'pte94910',
'e_value' => '3e-14',
'bit_score' => '79.7',
'alignment_length' => '226',
'identity_percentage' => '28.76',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS01G23740' => array(
'gene_id' => 'OS01G23740',
'e_value' => '1e-13',
'bit_score' => '76.6',
'alignment_length' => '174',
'identity_percentage' => '29.89',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0276141' => array(
'gene_id' => 'DDB_G0276141',
'e_value' => '2e-13',
'bit_score' => '75.9',
'alignment_length' => '255',
'identity_percentage' => '27.45',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ES0048G00490' => array(
'gene_id' => 'ES0048G00490',
'e_value' => '3e-13',
'bit_score' => '76.6',
'alignment_length' => '108',
'identity_percentage' => '32.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'pte495660' => array(
'gene_id' => 'pte495660',
'e_value' => '3e-13',
'bit_score' => '76.3',
'alignment_length' => '477',
'identity_percentage' => '20.34',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte57440' => array(
'gene_id' => 'pte57440',
'e_value' => '5e-13',
'bit_score' => '75.9',
'alignment_length' => '217',
'identity_percentage' => '23.50',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte776650' => array(
'gene_id' => 'pte776650',
'e_value' => '2e-12',
'bit_score' => '73.2',
'alignment_length' => '473',
'identity_percentage' => '22.20',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AA0013G02850' => array(
'gene_id' => 'AA0013G02850',
'e_value' => '3e-12',
'bit_score' => '71.2',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'AT3G16110' => array(
'gene_id' => 'AT3G16110',
'e_value' => '4e-12',
'bit_score' => '72.8',
'alignment_length' => '447',
'identity_percentage' => '18.57',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS05G06430' => array(
'gene_id' => 'OS05G06430',
'e_value' => '4e-12',
'bit_score' => '72.0',
'alignment_length' => '172',
'identity_percentage' => '28.49',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'gsu117020' => array(
'gene_id' => 'gsu117020',
'e_value' => '9e-12',
'bit_score' => '70.9',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00057G00440' => array(
'gene_id' => 'ATR_00057G00440',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '201',
'identity_percentage' => '27.86',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT2G47470' => array(
'gene_id' => 'AT2G47470',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '160',
'identity_percentage' => '28.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'phs111000' => array(
'gene_id' => 'phs111000',
'e_value' => '7e-11',
'bit_score' => '68.2',
'alignment_length' => '158',
'identity_percentage' => '29.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'TP03G07960' => array(
'gene_id' => 'TP03G07960',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '145',
'identity_percentage' => '26.90',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MP08G04160' => array(
'gene_id' => 'MP08G04160',
'e_value' => '1e-10',
'bit_score' => '65.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'SPAC17H9.14c' => array(
'gene_id' => 'SPAC17H9.14c',
'e_value' => '2e-10',
'bit_score' => '66.6',
'alignment_length' => '134',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100022g4' => array(
'gene_id' => 'Naga_100022g4',
'e_value' => '6e-10',
'bit_score' => '65.1',
'alignment_length' => '202',
'identity_percentage' => '26.73',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'MP05G00650' => array(
'gene_id' => 'MP05G00650',
'e_value' => '8e-10',
'bit_score' => '62.8',
'alignment_length' => '113',
'identity_percentage' => '31.86',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_06G06360' => array(
'gene_id' => 'MRCC299_06G06360',
'e_value' => '1e-09',
'bit_score' => '62.4',
'alignment_length' => '163',
'identity_percentage' => '30.67',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PP00201G00570' => array(
'gene_id' => 'PP00201G00570',
'e_value' => '1e-09',
'bit_score' => '63.9',
'alignment_length' => '102',
'identity_percentage' => '29.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte760940' => array(
'gene_id' => 'pte760940',
'e_value' => '2e-09',
'bit_score' => '64.3',
'alignment_length' => '452',
'identity_percentage' => '20.58',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte636330' => array(
'gene_id' => 'pte636330',
'e_value' => '6e-09',
'bit_score' => '62.0',
'alignment_length' => '332',
'identity_percentage' => '22.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OM_02G03300' => array(
'gene_id' => 'OM_02G03300',
'e_value' => '6e-09',
'bit_score' => '60.5',
'alignment_length' => '186',
'identity_percentage' => '26.34',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'pte370490' => array(
'gene_id' => 'pte370490',
'e_value' => '7e-09',
'bit_score' => '59.3',
'alignment_length' => '113',
'identity_percentage' => '28.32',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte229720' => array(
'gene_id' => 'pte229720',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '423',
'identity_percentage' => '21.04',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0030329' => array(
'gene_id' => 'FBgn0030329',
'e_value' => '7e-09',
'bit_score' => '62.0',
'alignment_length' => '95',
'identity_percentage' => '33.68',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'pte177250' => array(
'gene_id' => 'pte177250',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '422',
'identity_percentage' => '20.85',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PI00G53680' => array(
'gene_id' => 'PI00G53680',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '443',
'identity_percentage' => '22.35',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'gsu94330' => array(
'gene_id' => 'gsu94330',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '111',
'identity_percentage' => '30.63',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'pte688690' => array(
'gene_id' => 'pte688690',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '266',
'identity_percentage' => '25.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G02160' => array(
'gene_id' => 'ORCC809_04G02160',
'e_value' => '2e-08',
'bit_score' => '58.9',
'alignment_length' => '132',
'identity_percentage' => '26.52',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_11G01890' => array(
'gene_id' => 'MRCC299_11G01890',
'e_value' => '4e-08',
'bit_score' => '58.2',
'alignment_length' => '179',
'identity_percentage' => '27.37',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OT_04G03100' => array(
'gene_id' => 'OT_04G03100',
'e_value' => '8e-08',
'bit_score' => '57.0',
'alignment_length' => '191',
'identity_percentage' => '25.13',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'gsu23460' => array(
'gene_id' => 'gsu23460',
'e_value' => '9e-08',
'bit_score' => '56.2',
'alignment_length' => '116',
'identity_percentage' => '30.17',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'pte61460' => array(
'gene_id' => 'pte61460',
'e_value' => '1e-07',
'bit_score' => '55.8',
'alignment_length' => '117',
'identity_percentage' => '23.08',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'YDR518W' => array(
'gene_id' => 'YDR518W',
'e_value' => '2e-07',
'bit_score' => '57.8',
'alignment_length' => '502',
'identity_percentage' => '22.51',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000239264' => array(
'gene_id' => 'ENSG00000239264',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '135',
'identity_percentage' => '28.89',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'gsu40920' => array(
'gene_id' => 'gsu40920',
'e_value' => '4e-07',
'bit_score' => '57.0',
'alignment_length' => '504',
'identity_percentage' => '19.25',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000259040' => array(
'gene_id' => 'ENSG00000259040',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '196',
'identity_percentage' => '25.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G04420' => array(
'gene_id' => 'PTI_01G04420',
'e_value' => '5e-07',
'bit_score' => '54.7',
'alignment_length' => '111',
'identity_percentage' => '29.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'TP08G03970' => array(
'gene_id' => 'TP08G03970',
'e_value' => '5e-07',
'bit_score' => '53.5',
'alignment_length' => '96',
'identity_percentage' => '34.38',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'pte782140' => array(
'gene_id' => 'pte782140',
'e_value' => '6e-07',
'bit_score' => '56.2',
'alignment_length' => '134',
'identity_percentage' => '30.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_162G00010' => array(
'gene_id' => 'CNC64A_162G00010',
'e_value' => '7e-07',
'bit_score' => '53.1',
'alignment_length' => '112',
'identity_percentage' => '29.46',
'gf' => array(
[maximum depth reached]
)
),
'AP00G35970' => array(
'gene_id' => 'AP00G35970',
'e_value' => '8e-07',
'bit_score' => '56.2',
'alignment_length' => '425',
'identity_percentage' => '20.47',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte351710' => array(
'gene_id' => 'pte351710',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '29.06',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte436300' => array(
'gene_id' => 'pte436300',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '32.48',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ccr41820' => array(
'gene_id' => 'ccr41820',
'e_value' => '1e-06',
'bit_score' => '54.7',
'alignment_length' => '95',
'identity_percentage' => '29.47',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'pte561650' => array(
'gene_id' => 'pte561650',
'e_value' => '2e-06',
'bit_score' => '54.7',
'alignment_length' => '328',
'identity_percentage' => '19.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS03G17860' => array(
'gene_id' => 'OS03G17860',
'e_value' => '2e-06',
'bit_score' => '51.6',
'alignment_length' => '104',
'identity_percentage' => '35.58',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G01450' => array(
'gene_id' => 'PI00G01450',
'e_value' => '3e-06',
'bit_score' => '53.1',
'alignment_length' => '126',
'identity_percentage' => '30.95',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g00750' => array(
'gene_id' => 'RCC4223.02g00750',
'e_value' => '3e-06',
'bit_score' => '54.3',
'alignment_length' => '434',
'identity_percentage' => '21.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'pte705400' => array(
'gene_id' => 'pte705400',
'e_value' => '3e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte411900' => array(
'gene_id' => 'pte411900',
'e_value' => '4e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PP00077G00860' => array(
'gene_id' => 'PP00077G00860',
'e_value' => '7e-06',
'bit_score' => '50.4',
'alignment_length' => '90',
'identity_percentage' => '31.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'hom' => array(
(int) 0 => 'ENSG00000169340',
(int) 1 => 'ENSG00000185624',
(int) 2 => 'ENSG00000155660',
(int) 3 => 'ENSG00000239264',
(int) 4 => 'ENSG00000259040'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000030968',
(int) 1 => 'ENSMUSG00000024184',
(int) 2 => 'ENSMUSG00000025823'
),
'cel' => array(
(int) 0 => 'WBGene00003963',
(int) 1 => 'WBGene00003962',
(int) 2 => 'WBGene00003964',
(int) 3 => 'WBGene00015752',
(int) 4 => 'WBGene00014807'
),
'drm' => array(
(int) 0 => 'FBgn0014002',
(int) 1 => 'FBgn0033663',
(int) 2 => 'FBgn0030329'
),
'vca' => array(
(int) 0 => 'VC00G34650'
),
'ppa' => array(
(int) 0 => 'PP00422G00050',
(int) 1 => 'PP00003G01330',
(int) 2 => 'PP00039G00940',
(int) 3 => 'PP00083G01260',
(int) 4 => 'PP00407G00290',
(int) 5 => 'PP00004G01260',
(int) 6 => 'PP00122G00030',
(int) 7 => 'PP00077G00280',
(int) 8 => 'PP00046G00210',
(int) 9 => 'PP00046G00200',
(int) 10 => 'PP00210G00500',
(int) 11 => 'PP00201G00570',
(int) 12 => 'PP00077G00860'
),
'pte' => array(
(int) 0 => 'pte30590',
(int) 1 => 'pte452030',
(int) 2 => 'pte151310',
(int) 3 => 'pte163150',
(int) 4 => 'pte51030',
(int) 5 => 'pte94910',
(int) 6 => 'pte495660',
(int) 7 => 'pte57440',
(int) 8 => 'pte776650',
(int) 9 => 'pte760940',
(int) 10 => 'pte636330',
(int) 11 => 'pte370490',
(int) 12 => 'pte229720',
(int) 13 => 'pte177250',
(int) 14 => 'pte688690',
(int) 15 => 'pte61460',
(int) 16 => 'pte782140',
(int) 17 => 'pte351710',
(int) 18 => 'pte436300',
(int) 19 => 'pte561650',
(int) 20 => 'pte705400',
(int) 21 => 'pte411900'
),
'scp' => array(
(int) 0 => 'SPAC1F5.02',
(int) 1 => 'SPAC17H9.14c'
),
'cre' => array(
(int) 0 => 'CR02G03440'
),
'acg' => array(
(int) 0 => 'AC00G57770'
),
'ath' => array(
(int) 0 => 'AT5G60640',
(int) 1 => 'AT3G54960',
(int) 2 => 'AT1G77510',
(int) 3 => 'AT1G21750',
(int) 4 => 'AT1G52260',
(int) 5 => 'AT3G16110',
(int) 6 => 'AT2G47470'
),
'cme' => array(
(int) 0 => 'CM03G01810'
),
'nga' => array(
(int) 0 => 'Naga_100052g13',
(int) 1 => 'Naga_100022g4'
),
'osa' => array(
(int) 0 => 'OS04G35600',
(int) 1 => 'OS02G01010',
(int) 2 => 'OS11G09280',
(int) 3 => 'OS02G34940',
(int) 4 => 'OS06G06790',
(int) 5 => 'OS01G23740',
(int) 6 => 'OS05G06430',
(int) 7 => 'OS03G17860'
),
'atr' => array(
(int) 0 => 'ATR_00186G00150',
(int) 1 => 'ATR_00175G00360',
(int) 2 => 'ATR_00109G00370',
(int) 3 => 'ATR_00057G00440'
),
'esi' => array(
(int) 0 => 'ES0164G00180',
(int) 1 => 'ES0535G00010',
(int) 2 => 'ES0062G00620',
(int) 3 => 'ES0048G00490'
),
'cvu' => array(
(int) 0 => 'CV00G31820'
),
'ome' => array(
(int) 0 => 'OM_03G02840',
(int) 1 => 'OM_02G03300'
),
'olu' => array(
(int) 0 => 'OL05G02640'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_03G03360',
(int) 1 => 'BPRRCC1105_07G03480'
),
'ota' => array(
(int) 0 => 'OT_05G02710',
(int) 1 => 'OT_04G03100'
),
'sac' => array(
(int) 0 => 'YCL043C',
(int) 1 => 'YDR518W'
),
'orcc809' => array(
(int) 0 => 'ORCC809_05G02600',
(int) 1 => 'ORCC809_04G02160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.07g00280',
(int) 1 => 'RCC4223.02g00750'
),
'ccr' => array(
(int) 0 => 'ccr195600',
(int) 1 => 'ccr114860',
(int) 2 => 'ccr41820'
),
'pse3' => array(
(int) 0 => 'PI00G04410',
(int) 1 => 'PI00G53680',
(int) 2 => 'PI00G01450'
),
'mpu' => array(
(int) 0 => 'MP05G04320',
(int) 1 => 'MP08G04160',
(int) 2 => 'MP05G00650'
),
'hsp' => array(
(int) 0 => 'HE0000G45590'
),
'ddi' => array(
(int) 0 => 'DDB_G0291434',
(int) 1 => 'DDB_G0276141'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_005G01330'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_04G03740',
(int) 1 => 'MRCC299_06G06360',
(int) 2 => 'MRCC299_11G01890'
),
'aan' => array(
(int) 0 => 'AA0013G02850'
),
'gsu' => array(
(int) 0 => 'gsu117020',
(int) 1 => 'gsu94330',
(int) 2 => 'gsu23460',
(int) 3 => 'gsu40920'
),
'phs' => array(
(int) 0 => 'phs111000'
),
'tps' => array(
(int) 0 => 'TP03G07960',
(int) 1 => 'TP08G03970'
),
'ptri' => array(
(int) 0 => 'PTI_01G04420'
),
'apr' => array(
(int) 0 => 'AP00G35970'
)
),
'gene_id' => 'ENSG00000169340',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSG00000169340',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'MRCC299_09G00420',
'gf_placeholder' => 'HOM03P008929',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSG00000169340' => array(
'gene_id' => 'ENSG00000169340',
'e_value' => '0.0',
'bit_score' => '1188',
'alignment_length' => '585',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070618'
)
),
'ENSMUSG00000030968' => array(
'gene_id' => 'ENSMUSG00000030968',
'e_value' => '0.0',
'bit_score' => '815',
'alignment_length' => '597',
'identity_percentage' => '68.84',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070618'
)
),
'ENSG00000185624' => array(
'gene_id' => 'ENSG00000185624',
'e_value' => '1e-82',
'bit_score' => '274',
'alignment_length' => '453',
'identity_percentage' => '32.67',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'WBGene00003963' => array(
'gene_id' => 'WBGene00003963',
'e_value' => '9e-80',
'bit_score' => '266',
'alignment_length' => '460',
'identity_percentage' => '31.96',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'FBgn0014002' => array(
'gene_id' => 'FBgn0014002',
'e_value' => '9e-74',
'bit_score' => '250',
'alignment_length' => '467',
'identity_percentage' => '28.69',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSMUSG00000024184' => array(
'gene_id' => 'ENSMUSG00000024184',
'e_value' => '6e-73',
'bit_score' => '249',
'alignment_length' => '460',
'identity_percentage' => '32.61',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'WBGene00003962' => array(
'gene_id' => 'WBGene00003962',
'e_value' => '6e-54',
'bit_score' => '196',
'alignment_length' => '464',
'identity_percentage' => '25.86',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'VC00G34650' => array(
'gene_id' => 'VC00G34650',
'e_value' => '3e-41',
'bit_score' => '160',
'alignment_length' => '448',
'identity_percentage' => '25.22',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00422G00050' => array(
'gene_id' => 'PP00422G00050',
'e_value' => '4e-39',
'bit_score' => '155',
'alignment_length' => '477',
'identity_percentage' => '25.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00003G01330' => array(
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'species' => 'ppa',
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'gf' => array(
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)
),
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'bit_score' => '149',
'alignment_length' => '480',
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'species' => 'pte',
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'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
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'alignment_length' => '458',
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'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
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'alignment_length' => '467',
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'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00039G00940' => array(
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'alignment_length' => '464',
'identity_percentage' => '25.65',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00083G01260' => array(
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'alignment_length' => '515',
'identity_percentage' => '27.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'PP00407G00290' => array(
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'bit_score' => '140',
'alignment_length' => '465',
'identity_percentage' => '25.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AC00G57770' => array(
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'bit_score' => '140',
'alignment_length' => '455',
'identity_percentage' => '25.27',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AT5G60640' => array(
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'alignment_length' => '465',
'identity_percentage' => '24.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00004G01260' => array(
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'bit_score' => '138',
'alignment_length' => '443',
'identity_percentage' => '25.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'CM03G01810' => array(
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'alignment_length' => '486',
'identity_percentage' => '26.75',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'Naga_100052g13' => array(
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'e_value' => '4e-33',
'bit_score' => '136',
'alignment_length' => '474',
'identity_percentage' => '23.84',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OS04G35600' => array(
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'e_value' => '1e-32',
'bit_score' => '135',
'alignment_length' => '497',
'identity_percentage' => '26.76',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'AT3G54960' => array(
'gene_id' => 'AT3G54960',
'e_value' => '3e-32',
'bit_score' => '134',
'alignment_length' => '444',
'identity_percentage' => '25.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ATR_00186G00150' => array(
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'e_value' => '5e-32',
'bit_score' => '133',
'alignment_length' => '508',
'identity_percentage' => '24.80',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'ATR_00175G00360' => array(
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'e_value' => '1e-31',
'bit_score' => '132',
'alignment_length' => '469',
'identity_percentage' => '25.59',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ES0164G00180' => array(
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'e_value' => '1e-31',
'bit_score' => '131',
'alignment_length' => '492',
'identity_percentage' => '26.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'CV00G31820' => array(
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'e_value' => '1e-30',
'bit_score' => '129',
'alignment_length' => '472',
'identity_percentage' => '24.79',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'OS02G01010' => array(
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'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '487',
'identity_percentage' => '26.08',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSG00000155660' => array(
'gene_id' => 'ENSG00000155660',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '486',
'identity_percentage' => '25.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P039686'
)
),
'ENSMUSG00000025823' => array(
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'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '493',
'identity_percentage' => '25.35',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P039686'
)
),
'AT1G77510' => array(
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'bit_score' => '127',
'alignment_length' => '463',
'identity_percentage' => '24.62',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'OM_03G02840' => array(
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'e_value' => '7e-30',
'bit_score' => '127',
'alignment_length' => '499',
'identity_percentage' => '23.25',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OL05G02640' => array(
'gene_id' => 'OL05G02640',
'e_value' => '8e-30',
'bit_score' => '125',
'alignment_length' => '453',
'identity_percentage' => '23.18',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00122G00030' => array(
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'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '458',
'identity_percentage' => '23.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049423'
)
),
'PP00077G00280' => array(
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'e_value' => '4e-29',
'bit_score' => '125',
'alignment_length' => '433',
'identity_percentage' => '23.79',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'BPRRCC1105_03G03360' => array(
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'e_value' => '2e-28',
'bit_score' => '123',
'alignment_length' => '472',
'identity_percentage' => '23.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OT_05G02710' => array(
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'e_value' => '1e-27',
'bit_score' => '120',
'alignment_length' => '462',
'identity_percentage' => '24.89',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AT1G21750' => array(
'gene_id' => 'AT1G21750',
'e_value' => '2e-27',
'bit_score' => '119',
'alignment_length' => '465',
'identity_percentage' => '23.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'WBGene00003964' => array(
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'e_value' => '4e-27',
'bit_score' => '118',
'alignment_length' => '475',
'identity_percentage' => '24.42',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P064550'
)
),
'OS11G09280' => array(
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'e_value' => '1e-26',
'bit_score' => '117',
'alignment_length' => '465',
'identity_percentage' => '26.45',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'FBgn0033663' => array(
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'e_value' => '2e-25',
'bit_score' => '114',
'alignment_length' => '468',
'identity_percentage' => '23.93',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P064550'
)
),
'YCL043C' => array(
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'e_value' => '4e-25',
'bit_score' => '113',
'alignment_length' => '475',
'identity_percentage' => '25.68',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'WBGene00015752' => array(
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'e_value' => '6e-25',
'bit_score' => '113',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P039686'
)
),
'ORCC809_05G02600' => array(
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'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '464',
'identity_percentage' => '22.84',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OS02G34940' => array(
'gene_id' => 'OS02G34940',
'e_value' => '2e-24',
'bit_score' => '111',
'alignment_length' => '443',
'identity_percentage' => '26.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'PP00046G00210' => array(
'gene_id' => 'PP00046G00210',
'e_value' => '3e-24',
'bit_score' => '110',
'alignment_length' => '465',
'identity_percentage' => '24.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'RCC4223.07g00280' => array(
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'e_value' => '9e-24',
'bit_score' => '108',
'alignment_length' => '480',
'identity_percentage' => '21.04',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ccr195600' => array(
'gene_id' => 'ccr195600',
'e_value' => '1e-23',
'bit_score' => '108',
'alignment_length' => '473',
'identity_percentage' => '26.00',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00046G00200' => array(
'gene_id' => 'PP00046G00200',
'e_value' => '2e-23',
'bit_score' => '107',
'alignment_length' => '441',
'identity_percentage' => '25.40',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PI00G04410' => array(
'gene_id' => 'PI00G04410',
'e_value' => '4e-23',
'bit_score' => '107',
'alignment_length' => '468',
'identity_percentage' => '22.86',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'MP05G04320' => array(
'gene_id' => 'MP05G04320',
'e_value' => '4e-22',
'bit_score' => '103',
'alignment_length' => '511',
'identity_percentage' => '21.53',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'HE0000G45590' => array(
'gene_id' => 'HE0000G45590',
'e_value' => '1e-20',
'bit_score' => '100',
'alignment_length' => '475',
'identity_percentage' => '21.89',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'DDB_G0291434' => array(
'gene_id' => 'DDB_G0291434',
'e_value' => '9e-20',
'bit_score' => '96.7',
'alignment_length' => '450',
'identity_percentage' => '22.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ATR_00109G00370' => array(
'gene_id' => 'ATR_00109G00370',
'e_value' => '2e-19',
'bit_score' => '95.9',
'alignment_length' => '448',
'identity_percentage' => '20.09',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'ccr114860' => array(
'gene_id' => 'ccr114860',
'e_value' => '5e-18',
'bit_score' => '91.3',
'alignment_length' => '493',
'identity_percentage' => '23.33',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AT1G52260' => array(
'gene_id' => 'AT1G52260',
'e_value' => '3e-17',
'bit_score' => '89.0',
'alignment_length' => '439',
'identity_percentage' => '19.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'pte452030' => array(
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'e_value' => '5e-17',
'bit_score' => '88.6',
'alignment_length' => '228',
'identity_percentage' => '25.88',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'CNC64A_005G01330' => array(
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'e_value' => '1e-16',
'bit_score' => '87.0',
'alignment_length' => '419',
'identity_percentage' => '22.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'OS06G06790' => array(
'gene_id' => 'OS06G06790',
'e_value' => '2e-16',
'bit_score' => '86.3',
'alignment_length' => '430',
'identity_percentage' => '20.93',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'ES0535G00010' => array(
'gene_id' => 'ES0535G00010',
'e_value' => '5e-16',
'bit_score' => '85.9',
'alignment_length' => '149',
'identity_percentage' => '30.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P194762'
)
),
'BPRRCC1105_07G03480' => array(
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'e_value' => '6e-16',
'bit_score' => '85.1',
'alignment_length' => '271',
'identity_percentage' => '26.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00210G00500' => array(
'gene_id' => 'PP00210G00500',
'e_value' => '2e-15',
'bit_score' => '83.6',
'alignment_length' => '160',
'identity_percentage' => '30.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049423'
)
),
'MRCC299_04G03740' => array(
'gene_id' => 'MRCC299_04G03740',
'e_value' => '2e-15',
'bit_score' => '79.3',
'alignment_length' => '186',
'identity_percentage' => '27.42',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'pte151310' => array(
'gene_id' => 'pte151310',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '456',
'identity_percentage' => '21.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P034942',
'ORTHOFAM' => 'ORTHO03P047102'
)
),
'pte163150' => array(
'gene_id' => 'pte163150',
'e_value' => '6e-15',
'bit_score' => '81.6',
'alignment_length' => '470',
'identity_percentage' => '20.21',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P051568'
)
),
'ES0062G00620' => array(
'gene_id' => 'ES0062G00620',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '205',
'identity_percentage' => '27.80',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte51030' => array(
'gene_id' => 'pte51030',
'e_value' => '9e-15',
'bit_score' => '81.3',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'WBGene00014807' => array(
'gene_id' => 'WBGene00014807',
'e_value' => '2e-14',
'bit_score' => '78.6',
'alignment_length' => '228',
'identity_percentage' => '29.39',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P100622'
)
),
'pte94910' => array(
'gene_id' => 'pte94910',
'e_value' => '3e-14',
'bit_score' => '79.7',
'alignment_length' => '226',
'identity_percentage' => '28.76',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'OS01G23740' => array(
'gene_id' => 'OS01G23740',
'e_value' => '1e-13',
'bit_score' => '76.6',
'alignment_length' => '174',
'identity_percentage' => '29.89',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'DDB_G0276141' => array(
'gene_id' => 'DDB_G0276141',
'e_value' => '2e-13',
'bit_score' => '75.9',
'alignment_length' => '255',
'identity_percentage' => '27.45',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'ES0048G00490' => array(
'gene_id' => 'ES0048G00490',
'e_value' => '3e-13',
'bit_score' => '76.6',
'alignment_length' => '108',
'identity_percentage' => '32.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P128574'
)
),
'pte495660' => array(
'gene_id' => 'pte495660',
'e_value' => '3e-13',
'bit_score' => '76.3',
'alignment_length' => '477',
'identity_percentage' => '20.34',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P051568'
)
),
'pte57440' => array(
'gene_id' => 'pte57440',
'e_value' => '5e-13',
'bit_score' => '75.9',
'alignment_length' => '217',
'identity_percentage' => '23.50',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'pte776650' => array(
'gene_id' => 'pte776650',
'e_value' => '2e-12',
'bit_score' => '73.2',
'alignment_length' => '473',
'identity_percentage' => '22.20',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P034942',
'ORTHOFAM' => 'ORTHO03P047102'
)
),
'AA0013G02850' => array(
'gene_id' => 'AA0013G02850',
'e_value' => '3e-12',
'bit_score' => '71.2',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'AT3G16110' => array(
'gene_id' => 'AT3G16110',
'e_value' => '4e-12',
'bit_score' => '72.8',
'alignment_length' => '447',
'identity_percentage' => '18.57',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'OS05G06430' => array(
'gene_id' => 'OS05G06430',
'e_value' => '4e-12',
'bit_score' => '72.0',
'alignment_length' => '172',
'identity_percentage' => '28.49',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'gsu117020' => array(
'gene_id' => 'gsu117020',
'e_value' => '9e-12',
'bit_score' => '70.9',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'ATR_00057G00440' => array(
'gene_id' => 'ATR_00057G00440',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '201',
'identity_percentage' => '27.86',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'AT2G47470' => array(
'gene_id' => 'AT2G47470',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '160',
'identity_percentage' => '28.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'phs111000' => array(
'gene_id' => 'phs111000',
'e_value' => '7e-11',
'bit_score' => '68.2',
'alignment_length' => '158',
'identity_percentage' => '29.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'TP03G07960' => array(
'gene_id' => 'TP03G07960',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '145',
'identity_percentage' => '26.90',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'MP08G04160' => array(
'gene_id' => 'MP08G04160',
'e_value' => '1e-10',
'bit_score' => '65.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'SPAC17H9.14c' => array(
'gene_id' => 'SPAC17H9.14c',
'e_value' => '2e-10',
'bit_score' => '66.6',
'alignment_length' => '134',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'Naga_100022g4' => array(
'gene_id' => 'Naga_100022g4',
'e_value' => '6e-10',
'bit_score' => '65.1',
'alignment_length' => '202',
'identity_percentage' => '26.73',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'MP05G00650' => array(
'gene_id' => 'MP05G00650',
'e_value' => '8e-10',
'bit_score' => '62.8',
'alignment_length' => '113',
'identity_percentage' => '31.86',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'MRCC299_06G06360' => array(
'gene_id' => 'MRCC299_06G06360',
'e_value' => '1e-09',
'bit_score' => '62.4',
'alignment_length' => '163',
'identity_percentage' => '30.67',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'PP00201G00570' => array(
'gene_id' => 'PP00201G00570',
'e_value' => '1e-09',
'bit_score' => '63.9',
'alignment_length' => '102',
'identity_percentage' => '29.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte760940' => array(
'gene_id' => 'pte760940',
'e_value' => '2e-09',
'bit_score' => '64.3',
'alignment_length' => '452',
'identity_percentage' => '20.58',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P046031'
)
),
'pte636330' => array(
'gene_id' => 'pte636330',
'e_value' => '6e-09',
'bit_score' => '62.0',
'alignment_length' => '332',
'identity_percentage' => '22.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049937'
)
),
'OM_02G03300' => array(
'gene_id' => 'OM_02G03300',
'e_value' => '6e-09',
'bit_score' => '60.5',
'alignment_length' => '186',
'identity_percentage' => '26.34',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'pte370490' => array(
'gene_id' => 'pte370490',
'e_value' => '7e-09',
'bit_score' => '59.3',
'alignment_length' => '113',
'identity_percentage' => '28.32',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'pte229720' => array(
'gene_id' => 'pte229720',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '423',
'identity_percentage' => '21.04',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P030752'
)
),
'FBgn0030329' => array(
'gene_id' => 'FBgn0030329',
'e_value' => '7e-09',
'bit_score' => '62.0',
'alignment_length' => '95',
'identity_percentage' => '33.68',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'pte177250' => array(
'gene_id' => 'pte177250',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '422',
'identity_percentage' => '20.85',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P030752'
)
),
'PI00G53680' => array(
'gene_id' => 'PI00G53680',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '443',
'identity_percentage' => '22.35',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070420'
)
),
'gsu94330' => array(
'gene_id' => 'gsu94330',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '111',
'identity_percentage' => '30.63',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte688690' => array(
'gene_id' => 'pte688690',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '266',
'identity_percentage' => '25.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P046031'
)
),
'ORCC809_04G02160' => array(
'gene_id' => 'ORCC809_04G02160',
'e_value' => '2e-08',
'bit_score' => '58.9',
'alignment_length' => '132',
'identity_percentage' => '26.52',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'MRCC299_11G01890' => array(
'gene_id' => 'MRCC299_11G01890',
'e_value' => '4e-08',
'bit_score' => '58.2',
'alignment_length' => '179',
'identity_percentage' => '27.37',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'OT_04G03100' => array(
'gene_id' => 'OT_04G03100',
'e_value' => '8e-08',
'bit_score' => '57.0',
'alignment_length' => '191',
'identity_percentage' => '25.13',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'gsu23460' => array(
'gene_id' => 'gsu23460',
'e_value' => '9e-08',
'bit_score' => '56.2',
'alignment_length' => '116',
'identity_percentage' => '30.17',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P082260'
)
),
'pte61460' => array(
'gene_id' => 'pte61460',
'e_value' => '1e-07',
'bit_score' => '55.8',
'alignment_length' => '117',
'identity_percentage' => '23.08',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'YDR518W' => array(
'gene_id' => 'YDR518W',
'e_value' => '2e-07',
'bit_score' => '57.8',
'alignment_length' => '502',
'identity_percentage' => '22.51',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSG00000239264' => array(
'gene_id' => 'ENSG00000239264',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '135',
'identity_percentage' => '28.89',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'gsu40920' => array(
'gene_id' => 'gsu40920',
'e_value' => '4e-07',
'bit_score' => '57.0',
'alignment_length' => '504',
'identity_percentage' => '19.25',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSG00000259040' => array(
'gene_id' => 'ENSG00000259040',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '196',
'identity_percentage' => '25.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'PTI_01G04420' => array(
'gene_id' => 'PTI_01G04420',
'e_value' => '5e-07',
'bit_score' => '54.7',
'alignment_length' => '111',
'identity_percentage' => '29.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'TP08G03970' => array(
'gene_id' => 'TP08G03970',
'e_value' => '5e-07',
'bit_score' => '53.5',
'alignment_length' => '96',
'identity_percentage' => '34.38',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P009151'
)
),
'pte782140' => array(
'gene_id' => 'pte782140',
'e_value' => '6e-07',
'bit_score' => '56.2',
'alignment_length' => '134',
'identity_percentage' => '30.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P003417'
)
),
'CNC64A_162G00010' => array(
'gene_id' => 'CNC64A_162G00010',
'e_value' => '7e-07',
'bit_score' => '53.1',
'alignment_length' => '112',
'identity_percentage' => '29.46',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
),
'AP00G35970' => array(
'gene_id' => 'AP00G35970',
'e_value' => '8e-07',
'bit_score' => '56.2',
'alignment_length' => '425',
'identity_percentage' => '20.47',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'pte351710' => array(
'gene_id' => 'pte351710',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '29.06',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P050436'
)
),
'pte436300' => array(
'gene_id' => 'pte436300',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '32.48',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P050436'
)
),
'ccr41820' => array(
'gene_id' => 'ccr41820',
'e_value' => '1e-06',
'bit_score' => '54.7',
'alignment_length' => '95',
'identity_percentage' => '29.47',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte561650' => array(
'gene_id' => 'pte561650',
'e_value' => '2e-06',
'bit_score' => '54.7',
'alignment_length' => '328',
'identity_percentage' => '19.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049937'
)
),
'OS03G17860' => array(
'gene_id' => 'OS03G17860',
'e_value' => '2e-06',
'bit_score' => '51.6',
'alignment_length' => '104',
'identity_percentage' => '35.58',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
),
'PI00G01450' => array(
'gene_id' => 'PI00G01450',
'e_value' => '3e-06',
'bit_score' => '53.1',
'alignment_length' => '126',
'identity_percentage' => '30.95',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P013064'
)
),
'RCC4223.02g00750' => array(
'gene_id' => 'RCC4223.02g00750',
'e_value' => '3e-06',
'bit_score' => '54.3',
'alignment_length' => '434',
'identity_percentage' => '21.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070420'
)
),
'pte705400' => array(
'gene_id' => 'pte705400',
'e_value' => '3e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P009151'
)
),
'pte411900' => array(
'gene_id' => 'pte411900',
'e_value' => '4e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P009151'
)
),
'PP00077G00860' => array(
'gene_id' => 'PP00077G00860',
'e_value' => '7e-06',
'bit_score' => '50.4',
'alignment_length' => '90',
'identity_percentage' => '31.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
)
)
$similarity_hits_species = array(
'hom' => array(
(int) 0 => 'ENSG00000169340',
(int) 1 => 'ENSG00000185624',
(int) 2 => 'ENSG00000155660',
(int) 3 => 'ENSG00000239264',
(int) 4 => 'ENSG00000259040'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000030968',
(int) 1 => 'ENSMUSG00000024184',
(int) 2 => 'ENSMUSG00000025823'
),
'cel' => array(
(int) 0 => 'WBGene00003963',
(int) 1 => 'WBGene00003962',
(int) 2 => 'WBGene00003964',
(int) 3 => 'WBGene00015752',
(int) 4 => 'WBGene00014807'
),
'drm' => array(
(int) 0 => 'FBgn0014002',
(int) 1 => 'FBgn0033663',
(int) 2 => 'FBgn0030329'
),
'vca' => array(
(int) 0 => 'VC00G34650'
),
'ppa' => array(
(int) 0 => 'PP00422G00050',
(int) 1 => 'PP00003G01330',
(int) 2 => 'PP00039G00940',
(int) 3 => 'PP00083G01260',
(int) 4 => 'PP00407G00290',
(int) 5 => 'PP00004G01260',
(int) 6 => 'PP00122G00030',
(int) 7 => 'PP00077G00280',
(int) 8 => 'PP00046G00210',
(int) 9 => 'PP00046G00200',
(int) 10 => 'PP00210G00500',
(int) 11 => 'PP00201G00570',
(int) 12 => 'PP00077G00860'
),
'pte' => array(
(int) 0 => 'pte30590',
(int) 1 => 'pte452030',
(int) 2 => 'pte151310',
(int) 3 => 'pte163150',
(int) 4 => 'pte51030',
(int) 5 => 'pte94910',
(int) 6 => 'pte495660',
(int) 7 => 'pte57440',
(int) 8 => 'pte776650',
(int) 9 => 'pte760940',
(int) 10 => 'pte636330',
(int) 11 => 'pte370490',
(int) 12 => 'pte229720',
(int) 13 => 'pte177250',
(int) 14 => 'pte688690',
(int) 15 => 'pte61460',
(int) 16 => 'pte782140',
(int) 17 => 'pte351710',
(int) 18 => 'pte436300',
(int) 19 => 'pte561650',
(int) 20 => 'pte705400',
(int) 21 => 'pte411900'
),
'scp' => array(
(int) 0 => 'SPAC1F5.02',
(int) 1 => 'SPAC17H9.14c'
),
'cre' => array(
(int) 0 => 'CR02G03440'
),
'acg' => array(
(int) 0 => 'AC00G57770'
),
'ath' => array(
(int) 0 => 'AT5G60640',
(int) 1 => 'AT3G54960',
(int) 2 => 'AT1G77510',
(int) 3 => 'AT1G21750',
(int) 4 => 'AT1G52260',
(int) 5 => 'AT3G16110',
(int) 6 => 'AT2G47470'
),
'cme' => array(
(int) 0 => 'CM03G01810'
),
'nga' => array(
(int) 0 => 'Naga_100052g13',
(int) 1 => 'Naga_100022g4'
),
'osa' => array(
(int) 0 => 'OS04G35600',
(int) 1 => 'OS02G01010',
(int) 2 => 'OS11G09280',
(int) 3 => 'OS02G34940',
(int) 4 => 'OS06G06790',
(int) 5 => 'OS01G23740',
(int) 6 => 'OS05G06430',
(int) 7 => 'OS03G17860'
),
'atr' => array(
(int) 0 => 'ATR_00186G00150',
(int) 1 => 'ATR_00175G00360',
(int) 2 => 'ATR_00109G00370',
(int) 3 => 'ATR_00057G00440'
),
'esi' => array(
(int) 0 => 'ES0164G00180',
(int) 1 => 'ES0535G00010',
(int) 2 => 'ES0062G00620',
(int) 3 => 'ES0048G00490'
),
'cvu' => array(
(int) 0 => 'CV00G31820'
),
'ome' => array(
(int) 0 => 'OM_03G02840',
(int) 1 => 'OM_02G03300'
),
'olu' => array(
(int) 0 => 'OL05G02640'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_03G03360',
(int) 1 => 'BPRRCC1105_07G03480'
),
'ota' => array(
(int) 0 => 'OT_05G02710',
(int) 1 => 'OT_04G03100'
),
'sac' => array(
(int) 0 => 'YCL043C',
(int) 1 => 'YDR518W'
),
'orcc809' => array(
(int) 0 => 'ORCC809_05G02600',
(int) 1 => 'ORCC809_04G02160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.07g00280',
(int) 1 => 'RCC4223.02g00750'
),
'ccr' => array(
(int) 0 => 'ccr195600',
(int) 1 => 'ccr114860',
(int) 2 => 'ccr41820'
),
'pse3' => array(
(int) 0 => 'PI00G04410',
(int) 1 => 'PI00G53680',
(int) 2 => 'PI00G01450'
),
'mpu' => array(
(int) 0 => 'MP05G04320',
(int) 1 => 'MP08G04160',
(int) 2 => 'MP05G00650'
),
'hsp' => array(
(int) 0 => 'HE0000G45590'
),
'ddi' => array(
(int) 0 => 'DDB_G0291434',
(int) 1 => 'DDB_G0276141'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_005G01330'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_04G03740',
(int) 1 => 'MRCC299_06G06360',
(int) 2 => 'MRCC299_11G01890'
),
'aan' => array(
(int) 0 => 'AA0013G02850'
),
'gsu' => array(
(int) 0 => 'gsu117020',
(int) 1 => 'gsu94330',
(int) 2 => 'gsu23460',
(int) 3 => 'gsu40920'
),
'phs' => array(
(int) 0 => 'phs111000'
),
'tps' => array(
(int) 0 => 'TP03G07960',
(int) 1 => 'TP08G03970'
),
'ptri' => array(
(int) 0 => 'PTI_01G04420'
),
'apr' => array(
(int) 0 => 'AP00G35970'
)
)
$gene_id = 'ENSG00000169340'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSG00000169340'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'MRCC299_09G00420'
$gf_placeholder = 'HOM03P008929'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_162G00010',
'e_value' => '7e-07',
'bit_score' => '53.1',
'alignment_length' => '112',
'identity_percentage' => '29.46',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_162G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'ENSG00000169340' => array(
'gene_id' => 'ENSG00000169340',
'e_value' => '0.0',
'bit_score' => '1188',
'alignment_length' => '585',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000030968' => array(
'gene_id' => 'ENSMUSG00000030968',
'e_value' => '0.0',
'bit_score' => '815',
'alignment_length' => '597',
'identity_percentage' => '68.84',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000185624' => array(
'gene_id' => 'ENSG00000185624',
'e_value' => '1e-82',
'bit_score' => '274',
'alignment_length' => '453',
'identity_percentage' => '32.67',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00003963' => array(
'gene_id' => 'WBGene00003963',
'e_value' => '9e-80',
'bit_score' => '266',
'alignment_length' => '460',
'identity_percentage' => '31.96',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0014002' => array(
'gene_id' => 'FBgn0014002',
'e_value' => '9e-74',
'bit_score' => '250',
'alignment_length' => '467',
'identity_percentage' => '28.69',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000024184' => array(
'gene_id' => 'ENSMUSG00000024184',
'e_value' => '6e-73',
'bit_score' => '249',
'alignment_length' => '460',
'identity_percentage' => '32.61',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00003962' => array(
'gene_id' => 'WBGene00003962',
'e_value' => '6e-54',
'bit_score' => '196',
'alignment_length' => '464',
'identity_percentage' => '25.86',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'VC00G34650' => array(
'gene_id' => 'VC00G34650',
'e_value' => '3e-41',
'bit_score' => '160',
'alignment_length' => '448',
'identity_percentage' => '25.22',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'PP00422G00050' => array(
'gene_id' => 'PP00422G00050',
'e_value' => '4e-39',
'bit_score' => '155',
'alignment_length' => '477',
'identity_percentage' => '25.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00003G01330' => array(
'gene_id' => 'PP00003G01330',
'e_value' => '1e-38',
'bit_score' => '153',
'alignment_length' => '468',
'identity_percentage' => '26.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte30590' => array(
'gene_id' => 'pte30590',
'e_value' => '1e-37',
'bit_score' => '149',
'alignment_length' => '480',
'identity_percentage' => '24.38',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'SPAC1F5.02' => array(
'gene_id' => 'SPAC1F5.02',
'e_value' => '1e-37',
'bit_score' => '149',
'alignment_length' => '458',
'identity_percentage' => '28.38',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'CR02G03440' => array(
'gene_id' => 'CR02G03440',
'e_value' => '3e-37',
'bit_score' => '148',
'alignment_length' => '467',
'identity_percentage' => '24.20',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'PP00039G00940' => array(
'gene_id' => 'PP00039G00940',
'e_value' => '3e-35',
'bit_score' => '142',
'alignment_length' => '464',
'identity_percentage' => '25.65',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00083G01260' => array(
'gene_id' => 'PP00083G01260',
'e_value' => '4e-35',
'bit_score' => '142',
'alignment_length' => '515',
'identity_percentage' => '27.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00407G00290' => array(
'gene_id' => 'PP00407G00290',
'e_value' => '2e-34',
'bit_score' => '140',
'alignment_length' => '465',
'identity_percentage' => '25.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AC00G57770' => array(
'gene_id' => 'AC00G57770',
'e_value' => '2e-34',
'bit_score' => '140',
'alignment_length' => '455',
'identity_percentage' => '25.27',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AT5G60640' => array(
'gene_id' => 'AT5G60640',
'e_value' => '2e-33',
'bit_score' => '138',
'alignment_length' => '465',
'identity_percentage' => '24.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00004G01260' => array(
'gene_id' => 'PP00004G01260',
'e_value' => '3e-33',
'bit_score' => '138',
'alignment_length' => '443',
'identity_percentage' => '25.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'CM03G01810' => array(
'gene_id' => 'CM03G01810',
'e_value' => '3e-33',
'bit_score' => '137',
'alignment_length' => '486',
'identity_percentage' => '26.75',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100052g13' => array(
'gene_id' => 'Naga_100052g13',
'e_value' => '4e-33',
'bit_score' => '136',
'alignment_length' => '474',
'identity_percentage' => '23.84',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OS04G35600' => array(
'gene_id' => 'OS04G35600',
'e_value' => '1e-32',
'bit_score' => '135',
'alignment_length' => '497',
'identity_percentage' => '26.76',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT3G54960' => array(
'gene_id' => 'AT3G54960',
'e_value' => '3e-32',
'bit_score' => '134',
'alignment_length' => '444',
'identity_percentage' => '25.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00186G00150' => array(
'gene_id' => 'ATR_00186G00150',
'e_value' => '5e-32',
'bit_score' => '133',
'alignment_length' => '508',
'identity_percentage' => '24.80',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00175G00360' => array(
'gene_id' => 'ATR_00175G00360',
'e_value' => '1e-31',
'bit_score' => '132',
'alignment_length' => '469',
'identity_percentage' => '25.59',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ES0164G00180' => array(
'gene_id' => 'ES0164G00180',
'e_value' => '1e-31',
'bit_score' => '131',
'alignment_length' => '492',
'identity_percentage' => '26.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CV00G31820' => array(
'gene_id' => 'CV00G31820',
'e_value' => '1e-30',
'bit_score' => '129',
'alignment_length' => '472',
'identity_percentage' => '24.79',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS02G01010' => array(
'gene_id' => 'OS02G01010',
'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '487',
'identity_percentage' => '26.08',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000155660' => array(
'gene_id' => 'ENSG00000155660',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '486',
'identity_percentage' => '25.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000025823' => array(
'gene_id' => 'ENSMUSG00000025823',
'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '493',
'identity_percentage' => '25.35',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'AT1G77510' => array(
'gene_id' => 'AT1G77510',
'e_value' => '4e-30',
'bit_score' => '127',
'alignment_length' => '463',
'identity_percentage' => '24.62',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OM_03G02840' => array(
'gene_id' => 'OM_03G02840',
'e_value' => '7e-30',
'bit_score' => '127',
'alignment_length' => '499',
'identity_percentage' => '23.25',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'OL05G02640' => array(
'gene_id' => 'OL05G02640',
'e_value' => '8e-30',
'bit_score' => '125',
'alignment_length' => '453',
'identity_percentage' => '23.18',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'PP00122G00030' => array(
'gene_id' => 'PP00122G00030',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '458',
'identity_percentage' => '23.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00077G00280' => array(
'gene_id' => 'PP00077G00280',
'e_value' => '4e-29',
'bit_score' => '125',
'alignment_length' => '433',
'identity_percentage' => '23.79',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_03G03360' => array(
'gene_id' => 'BPRRCC1105_03G03360',
'e_value' => '2e-28',
'bit_score' => '123',
'alignment_length' => '472',
'identity_percentage' => '23.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'OT_05G02710' => array(
'gene_id' => 'OT_05G02710',
'e_value' => '1e-27',
'bit_score' => '120',
'alignment_length' => '462',
'identity_percentage' => '24.89',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'AT1G21750' => array(
'gene_id' => 'AT1G21750',
'e_value' => '2e-27',
'bit_score' => '119',
'alignment_length' => '465',
'identity_percentage' => '23.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00003964' => array(
'gene_id' => 'WBGene00003964',
'e_value' => '4e-27',
'bit_score' => '118',
'alignment_length' => '475',
'identity_percentage' => '24.42',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'OS11G09280' => array(
'gene_id' => 'OS11G09280',
'e_value' => '1e-26',
'bit_score' => '117',
'alignment_length' => '465',
'identity_percentage' => '26.45',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0033663' => array(
'gene_id' => 'FBgn0033663',
'e_value' => '2e-25',
'bit_score' => '114',
'alignment_length' => '468',
'identity_percentage' => '23.93',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'YCL043C' => array(
'gene_id' => 'YCL043C',
'e_value' => '4e-25',
'bit_score' => '113',
'alignment_length' => '475',
'identity_percentage' => '25.68',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00015752' => array(
'gene_id' => 'WBGene00015752',
'e_value' => '6e-25',
'bit_score' => '113',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_05G02600' => array(
'gene_id' => 'ORCC809_05G02600',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '464',
'identity_percentage' => '22.84',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'OS02G34940' => array(
'gene_id' => 'OS02G34940',
'e_value' => '2e-24',
'bit_score' => '111',
'alignment_length' => '443',
'identity_percentage' => '26.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00046G00210' => array(
'gene_id' => 'PP00046G00210',
'e_value' => '3e-24',
'bit_score' => '110',
'alignment_length' => '465',
'identity_percentage' => '24.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.07g00280' => array(
'gene_id' => 'RCC4223.07g00280',
'e_value' => '9e-24',
'bit_score' => '108',
'alignment_length' => '480',
'identity_percentage' => '21.04',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ccr195600' => array(
'gene_id' => 'ccr195600',
'e_value' => '1e-23',
'bit_score' => '108',
'alignment_length' => '473',
'identity_percentage' => '26.00',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'PP00046G00200' => array(
'gene_id' => 'PP00046G00200',
'e_value' => '2e-23',
'bit_score' => '107',
'alignment_length' => '441',
'identity_percentage' => '25.40',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PI00G04410' => array(
'gene_id' => 'PI00G04410',
'e_value' => '4e-23',
'bit_score' => '107',
'alignment_length' => '468',
'identity_percentage' => '22.86',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'MP05G04320' => array(
'gene_id' => 'MP05G04320',
'e_value' => '4e-22',
'bit_score' => '103',
'alignment_length' => '511',
'identity_percentage' => '21.53',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G45590' => array(
'gene_id' => 'HE0000G45590',
'e_value' => '1e-20',
'bit_score' => '100',
'alignment_length' => '475',
'identity_percentage' => '21.89',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0291434' => array(
'gene_id' => 'DDB_G0291434',
'e_value' => '9e-20',
'bit_score' => '96.7',
'alignment_length' => '450',
'identity_percentage' => '22.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00109G00370' => array(
'gene_id' => 'ATR_00109G00370',
'e_value' => '2e-19',
'bit_score' => '95.9',
'alignment_length' => '448',
'identity_percentage' => '20.09',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ccr114860' => array(
'gene_id' => 'ccr114860',
'e_value' => '5e-18',
'bit_score' => '91.3',
'alignment_length' => '493',
'identity_percentage' => '23.33',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'AT1G52260' => array(
'gene_id' => 'AT1G52260',
'e_value' => '3e-17',
'bit_score' => '89.0',
'alignment_length' => '439',
'identity_percentage' => '19.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'pte452030' => array(
'gene_id' => 'pte452030',
'e_value' => '5e-17',
'bit_score' => '88.6',
'alignment_length' => '228',
'identity_percentage' => '25.88',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_005G01330' => array(
'gene_id' => 'CNC64A_005G01330',
'e_value' => '1e-16',
'bit_score' => '87.0',
'alignment_length' => '419',
'identity_percentage' => '22.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'OS06G06790' => array(
'gene_id' => 'OS06G06790',
'e_value' => '2e-16',
'bit_score' => '86.3',
'alignment_length' => '430',
'identity_percentage' => '20.93',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ES0535G00010' => array(
'gene_id' => 'ES0535G00010',
'e_value' => '5e-16',
'bit_score' => '85.9',
'alignment_length' => '149',
'identity_percentage' => '30.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'BPRRCC1105_07G03480' => array(
'gene_id' => 'BPRRCC1105_07G03480',
'e_value' => '6e-16',
'bit_score' => '85.1',
'alignment_length' => '271',
'identity_percentage' => '26.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
[maximum depth reached]
)
),
'PP00210G00500' => array(
'gene_id' => 'PP00210G00500',
'e_value' => '2e-15',
'bit_score' => '83.6',
'alignment_length' => '160',
'identity_percentage' => '30.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_04G03740' => array(
'gene_id' => 'MRCC299_04G03740',
'e_value' => '2e-15',
'bit_score' => '79.3',
'alignment_length' => '186',
'identity_percentage' => '27.42',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'pte151310' => array(
'gene_id' => 'pte151310',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '456',
'identity_percentage' => '21.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte163150' => array(
'gene_id' => 'pte163150',
'e_value' => '6e-15',
'bit_score' => '81.6',
'alignment_length' => '470',
'identity_percentage' => '20.21',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ES0062G00620' => array(
'gene_id' => 'ES0062G00620',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '205',
'identity_percentage' => '27.80',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'pte51030' => array(
'gene_id' => 'pte51030',
'e_value' => '9e-15',
'bit_score' => '81.3',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00014807' => array(
'gene_id' => 'WBGene00014807',
'e_value' => '2e-14',
'bit_score' => '78.6',
'alignment_length' => '228',
'identity_percentage' => '29.39',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'pte94910' => array(
'gene_id' => 'pte94910',
'e_value' => '3e-14',
'bit_score' => '79.7',
'alignment_length' => '226',
'identity_percentage' => '28.76',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS01G23740' => array(
'gene_id' => 'OS01G23740',
'e_value' => '1e-13',
'bit_score' => '76.6',
'alignment_length' => '174',
'identity_percentage' => '29.89',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0276141' => array(
'gene_id' => 'DDB_G0276141',
'e_value' => '2e-13',
'bit_score' => '75.9',
'alignment_length' => '255',
'identity_percentage' => '27.45',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ES0048G00490' => array(
'gene_id' => 'ES0048G00490',
'e_value' => '3e-13',
'bit_score' => '76.6',
'alignment_length' => '108',
'identity_percentage' => '32.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'pte495660' => array(
'gene_id' => 'pte495660',
'e_value' => '3e-13',
'bit_score' => '76.3',
'alignment_length' => '477',
'identity_percentage' => '20.34',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte57440' => array(
'gene_id' => 'pte57440',
'e_value' => '5e-13',
'bit_score' => '75.9',
'alignment_length' => '217',
'identity_percentage' => '23.50',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte776650' => array(
'gene_id' => 'pte776650',
'e_value' => '2e-12',
'bit_score' => '73.2',
'alignment_length' => '473',
'identity_percentage' => '22.20',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'AA0013G02850' => array(
'gene_id' => 'AA0013G02850',
'e_value' => '3e-12',
'bit_score' => '71.2',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'AT3G16110' => array(
'gene_id' => 'AT3G16110',
'e_value' => '4e-12',
'bit_score' => '72.8',
'alignment_length' => '447',
'identity_percentage' => '18.57',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS05G06430' => array(
'gene_id' => 'OS05G06430',
'e_value' => '4e-12',
'bit_score' => '72.0',
'alignment_length' => '172',
'identity_percentage' => '28.49',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'gsu117020' => array(
'gene_id' => 'gsu117020',
'e_value' => '9e-12',
'bit_score' => '70.9',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00057G00440' => array(
'gene_id' => 'ATR_00057G00440',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '201',
'identity_percentage' => '27.86',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT2G47470' => array(
'gene_id' => 'AT2G47470',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '160',
'identity_percentage' => '28.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'phs111000' => array(
'gene_id' => 'phs111000',
'e_value' => '7e-11',
'bit_score' => '68.2',
'alignment_length' => '158',
'identity_percentage' => '29.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'TP03G07960' => array(
'gene_id' => 'TP03G07960',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '145',
'identity_percentage' => '26.90',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'MP08G04160' => array(
'gene_id' => 'MP08G04160',
'e_value' => '1e-10',
'bit_score' => '65.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'SPAC17H9.14c' => array(
'gene_id' => 'SPAC17H9.14c',
'e_value' => '2e-10',
'bit_score' => '66.6',
'alignment_length' => '134',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100022g4' => array(
'gene_id' => 'Naga_100022g4',
'e_value' => '6e-10',
'bit_score' => '65.1',
'alignment_length' => '202',
'identity_percentage' => '26.73',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'MP05G00650' => array(
'gene_id' => 'MP05G00650',
'e_value' => '8e-10',
'bit_score' => '62.8',
'alignment_length' => '113',
'identity_percentage' => '31.86',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_06G06360' => array(
'gene_id' => 'MRCC299_06G06360',
'e_value' => '1e-09',
'bit_score' => '62.4',
'alignment_length' => '163',
'identity_percentage' => '30.67',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'PP00201G00570' => array(
'gene_id' => 'PP00201G00570',
'e_value' => '1e-09',
'bit_score' => '63.9',
'alignment_length' => '102',
'identity_percentage' => '29.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'pte760940' => array(
'gene_id' => 'pte760940',
'e_value' => '2e-09',
'bit_score' => '64.3',
'alignment_length' => '452',
'identity_percentage' => '20.58',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte636330' => array(
'gene_id' => 'pte636330',
'e_value' => '6e-09',
'bit_score' => '62.0',
'alignment_length' => '332',
'identity_percentage' => '22.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OM_02G03300' => array(
'gene_id' => 'OM_02G03300',
'e_value' => '6e-09',
'bit_score' => '60.5',
'alignment_length' => '186',
'identity_percentage' => '26.34',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'pte370490' => array(
'gene_id' => 'pte370490',
'e_value' => '7e-09',
'bit_score' => '59.3',
'alignment_length' => '113',
'identity_percentage' => '28.32',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte229720' => array(
'gene_id' => 'pte229720',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '423',
'identity_percentage' => '21.04',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0030329' => array(
'gene_id' => 'FBgn0030329',
'e_value' => '7e-09',
'bit_score' => '62.0',
'alignment_length' => '95',
'identity_percentage' => '33.68',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'pte177250' => array(
'gene_id' => 'pte177250',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '422',
'identity_percentage' => '20.85',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PI00G53680' => array(
'gene_id' => 'PI00G53680',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '443',
'identity_percentage' => '22.35',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'gsu94330' => array(
'gene_id' => 'gsu94330',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '111',
'identity_percentage' => '30.63',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'pte688690' => array(
'gene_id' => 'pte688690',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '266',
'identity_percentage' => '25.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_04G02160' => array(
'gene_id' => 'ORCC809_04G02160',
'e_value' => '2e-08',
'bit_score' => '58.9',
'alignment_length' => '132',
'identity_percentage' => '26.52',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_11G01890' => array(
'gene_id' => 'MRCC299_11G01890',
'e_value' => '4e-08',
'bit_score' => '58.2',
'alignment_length' => '179',
'identity_percentage' => '27.37',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'OT_04G03100' => array(
'gene_id' => 'OT_04G03100',
'e_value' => '8e-08',
'bit_score' => '57.0',
'alignment_length' => '191',
'identity_percentage' => '25.13',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'gsu23460' => array(
'gene_id' => 'gsu23460',
'e_value' => '9e-08',
'bit_score' => '56.2',
'alignment_length' => '116',
'identity_percentage' => '30.17',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'pte61460' => array(
'gene_id' => 'pte61460',
'e_value' => '1e-07',
'bit_score' => '55.8',
'alignment_length' => '117',
'identity_percentage' => '23.08',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'YDR518W' => array(
'gene_id' => 'YDR518W',
'e_value' => '2e-07',
'bit_score' => '57.8',
'alignment_length' => '502',
'identity_percentage' => '22.51',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000239264' => array(
'gene_id' => 'ENSG00000239264',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '135',
'identity_percentage' => '28.89',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'gsu40920' => array(
'gene_id' => 'gsu40920',
'e_value' => '4e-07',
'bit_score' => '57.0',
'alignment_length' => '504',
'identity_percentage' => '19.25',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000259040' => array(
'gene_id' => 'ENSG00000259040',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '196',
'identity_percentage' => '25.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G04420' => array(
'gene_id' => 'PTI_01G04420',
'e_value' => '5e-07',
'bit_score' => '54.7',
'alignment_length' => '111',
'identity_percentage' => '29.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'TP08G03970' => array(
'gene_id' => 'TP08G03970',
'e_value' => '5e-07',
'bit_score' => '53.5',
'alignment_length' => '96',
'identity_percentage' => '34.38',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'pte782140' => array(
'gene_id' => 'pte782140',
'e_value' => '6e-07',
'bit_score' => '56.2',
'alignment_length' => '134',
'identity_percentage' => '30.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_162G00010' => array(
'gene_id' => 'CNC64A_162G00010',
'e_value' => '7e-07',
'bit_score' => '53.1',
'alignment_length' => '112',
'identity_percentage' => '29.46',
'gf' => array(
[maximum depth reached]
)
),
'AP00G35970' => array(
'gene_id' => 'AP00G35970',
'e_value' => '8e-07',
'bit_score' => '56.2',
'alignment_length' => '425',
'identity_percentage' => '20.47',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'pte351710' => array(
'gene_id' => 'pte351710',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '29.06',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte436300' => array(
'gene_id' => 'pte436300',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '32.48',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ccr41820' => array(
'gene_id' => 'ccr41820',
'e_value' => '1e-06',
'bit_score' => '54.7',
'alignment_length' => '95',
'identity_percentage' => '29.47',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'pte561650' => array(
'gene_id' => 'pte561650',
'e_value' => '2e-06',
'bit_score' => '54.7',
'alignment_length' => '328',
'identity_percentage' => '19.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS03G17860' => array(
'gene_id' => 'OS03G17860',
'e_value' => '2e-06',
'bit_score' => '51.6',
'alignment_length' => '104',
'identity_percentage' => '35.58',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PI00G01450' => array(
'gene_id' => 'PI00G01450',
'e_value' => '3e-06',
'bit_score' => '53.1',
'alignment_length' => '126',
'identity_percentage' => '30.95',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g00750' => array(
'gene_id' => 'RCC4223.02g00750',
'e_value' => '3e-06',
'bit_score' => '54.3',
'alignment_length' => '434',
'identity_percentage' => '21.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'pte705400' => array(
'gene_id' => 'pte705400',
'e_value' => '3e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte411900' => array(
'gene_id' => 'pte411900',
'e_value' => '4e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'PP00077G00860' => array(
'gene_id' => 'PP00077G00860',
'e_value' => '7e-06',
'bit_score' => '50.4',
'alignment_length' => '90',
'identity_percentage' => '31.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'hom' => array(
(int) 0 => 'ENSG00000169340',
(int) 1 => 'ENSG00000185624',
(int) 2 => 'ENSG00000155660',
(int) 3 => 'ENSG00000239264',
(int) 4 => 'ENSG00000259040'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000030968',
(int) 1 => 'ENSMUSG00000024184',
(int) 2 => 'ENSMUSG00000025823'
),
'cel' => array(
(int) 0 => 'WBGene00003963',
(int) 1 => 'WBGene00003962',
(int) 2 => 'WBGene00003964',
(int) 3 => 'WBGene00015752',
(int) 4 => 'WBGene00014807'
),
'drm' => array(
(int) 0 => 'FBgn0014002',
(int) 1 => 'FBgn0033663',
(int) 2 => 'FBgn0030329'
),
'vca' => array(
(int) 0 => 'VC00G34650'
),
'ppa' => array(
(int) 0 => 'PP00422G00050',
(int) 1 => 'PP00003G01330',
(int) 2 => 'PP00039G00940',
(int) 3 => 'PP00083G01260',
(int) 4 => 'PP00407G00290',
(int) 5 => 'PP00004G01260',
(int) 6 => 'PP00122G00030',
(int) 7 => 'PP00077G00280',
(int) 8 => 'PP00046G00210',
(int) 9 => 'PP00046G00200',
(int) 10 => 'PP00210G00500',
(int) 11 => 'PP00201G00570',
(int) 12 => 'PP00077G00860'
),
'pte' => array(
(int) 0 => 'pte30590',
(int) 1 => 'pte452030',
(int) 2 => 'pte151310',
(int) 3 => 'pte163150',
(int) 4 => 'pte51030',
(int) 5 => 'pte94910',
(int) 6 => 'pte495660',
(int) 7 => 'pte57440',
(int) 8 => 'pte776650',
(int) 9 => 'pte760940',
(int) 10 => 'pte636330',
(int) 11 => 'pte370490',
(int) 12 => 'pte229720',
(int) 13 => 'pte177250',
(int) 14 => 'pte688690',
(int) 15 => 'pte61460',
(int) 16 => 'pte782140',
(int) 17 => 'pte351710',
(int) 18 => 'pte436300',
(int) 19 => 'pte561650',
(int) 20 => 'pte705400',
(int) 21 => 'pte411900'
),
'scp' => array(
(int) 0 => 'SPAC1F5.02',
(int) 1 => 'SPAC17H9.14c'
),
'cre' => array(
(int) 0 => 'CR02G03440'
),
'acg' => array(
(int) 0 => 'AC00G57770'
),
'ath' => array(
(int) 0 => 'AT5G60640',
(int) 1 => 'AT3G54960',
(int) 2 => 'AT1G77510',
(int) 3 => 'AT1G21750',
(int) 4 => 'AT1G52260',
(int) 5 => 'AT3G16110',
(int) 6 => 'AT2G47470'
),
'cme' => array(
(int) 0 => 'CM03G01810'
),
'nga' => array(
(int) 0 => 'Naga_100052g13',
(int) 1 => 'Naga_100022g4'
),
'osa' => array(
(int) 0 => 'OS04G35600',
(int) 1 => 'OS02G01010',
(int) 2 => 'OS11G09280',
(int) 3 => 'OS02G34940',
(int) 4 => 'OS06G06790',
(int) 5 => 'OS01G23740',
(int) 6 => 'OS05G06430',
(int) 7 => 'OS03G17860'
),
'atr' => array(
(int) 0 => 'ATR_00186G00150',
(int) 1 => 'ATR_00175G00360',
(int) 2 => 'ATR_00109G00370',
(int) 3 => 'ATR_00057G00440'
),
'esi' => array(
(int) 0 => 'ES0164G00180',
(int) 1 => 'ES0535G00010',
(int) 2 => 'ES0062G00620',
(int) 3 => 'ES0048G00490'
),
'cvu' => array(
(int) 0 => 'CV00G31820'
),
'ome' => array(
(int) 0 => 'OM_03G02840',
(int) 1 => 'OM_02G03300'
),
'olu' => array(
(int) 0 => 'OL05G02640'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_03G03360',
(int) 1 => 'BPRRCC1105_07G03480'
),
'ota' => array(
(int) 0 => 'OT_05G02710',
(int) 1 => 'OT_04G03100'
),
'sac' => array(
(int) 0 => 'YCL043C',
(int) 1 => 'YDR518W'
),
'orcc809' => array(
(int) 0 => 'ORCC809_05G02600',
(int) 1 => 'ORCC809_04G02160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.07g00280',
(int) 1 => 'RCC4223.02g00750'
),
'ccr' => array(
(int) 0 => 'ccr195600',
(int) 1 => 'ccr114860',
(int) 2 => 'ccr41820'
),
'pse3' => array(
(int) 0 => 'PI00G04410',
(int) 1 => 'PI00G53680',
(int) 2 => 'PI00G01450'
),
'mpu' => array(
(int) 0 => 'MP05G04320',
(int) 1 => 'MP08G04160',
(int) 2 => 'MP05G00650'
),
'hsp' => array(
(int) 0 => 'HE0000G45590'
),
'ddi' => array(
(int) 0 => 'DDB_G0291434',
(int) 1 => 'DDB_G0276141'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_005G01330'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_04G03740',
(int) 1 => 'MRCC299_06G06360',
(int) 2 => 'MRCC299_11G01890'
),
'aan' => array(
(int) 0 => 'AA0013G02850'
),
'gsu' => array(
(int) 0 => 'gsu117020',
(int) 1 => 'gsu94330',
(int) 2 => 'gsu23460',
(int) 3 => 'gsu40920'
),
'phs' => array(
(int) 0 => 'phs111000'
),
'tps' => array(
(int) 0 => 'TP03G07960',
(int) 1 => 'TP08G03970'
),
'ptri' => array(
(int) 0 => 'PTI_01G04420'
),
'apr' => array(
(int) 0 => 'AP00G35970'
)
),
'gene_id' => 'ENSG00000169340',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'ENSG00000169340',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'MRCC299_09G00420',
'gf_placeholder' => 'HOM03P008929',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'ENSG00000169340' => array(
'gene_id' => 'ENSG00000169340',
'e_value' => '0.0',
'bit_score' => '1188',
'alignment_length' => '585',
'identity_percentage' => '100.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070618'
)
),
'ENSMUSG00000030968' => array(
'gene_id' => 'ENSMUSG00000030968',
'e_value' => '0.0',
'bit_score' => '815',
'alignment_length' => '597',
'identity_percentage' => '68.84',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070618'
)
),
'ENSG00000185624' => array(
'gene_id' => 'ENSG00000185624',
'e_value' => '1e-82',
'bit_score' => '274',
'alignment_length' => '453',
'identity_percentage' => '32.67',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'WBGene00003963' => array(
'gene_id' => 'WBGene00003963',
'e_value' => '9e-80',
'bit_score' => '266',
'alignment_length' => '460',
'identity_percentage' => '31.96',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'FBgn0014002' => array(
'gene_id' => 'FBgn0014002',
'e_value' => '9e-74',
'bit_score' => '250',
'alignment_length' => '467',
'identity_percentage' => '28.69',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSMUSG00000024184' => array(
'gene_id' => 'ENSMUSG00000024184',
'e_value' => '6e-73',
'bit_score' => '249',
'alignment_length' => '460',
'identity_percentage' => '32.61',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'WBGene00003962' => array(
'gene_id' => 'WBGene00003962',
'e_value' => '6e-54',
'bit_score' => '196',
'alignment_length' => '464',
'identity_percentage' => '25.86',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'VC00G34650' => array(
'gene_id' => 'VC00G34650',
'e_value' => '3e-41',
'bit_score' => '160',
'alignment_length' => '448',
'identity_percentage' => '25.22',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
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'alignment_length' => '477',
'identity_percentage' => '25.37',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00003G01330' => array(
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'e_value' => '1e-38',
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'alignment_length' => '468',
'identity_percentage' => '26.92',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'pte30590' => array(
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'e_value' => '1e-37',
'bit_score' => '149',
'alignment_length' => '480',
'identity_percentage' => '24.38',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'SPAC1F5.02' => array(
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'bit_score' => '149',
'alignment_length' => '458',
'identity_percentage' => '28.38',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'CR02G03440' => array(
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'e_value' => '3e-37',
'bit_score' => '148',
'alignment_length' => '467',
'identity_percentage' => '24.20',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00039G00940' => array(
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'e_value' => '3e-35',
'bit_score' => '142',
'alignment_length' => '464',
'identity_percentage' => '25.65',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00083G01260' => array(
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'e_value' => '4e-35',
'bit_score' => '142',
'alignment_length' => '515',
'identity_percentage' => '27.38',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'PP00407G00290' => array(
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'e_value' => '2e-34',
'bit_score' => '140',
'alignment_length' => '465',
'identity_percentage' => '25.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AC00G57770' => array(
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'e_value' => '2e-34',
'bit_score' => '140',
'alignment_length' => '455',
'identity_percentage' => '25.27',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AT5G60640' => array(
'gene_id' => 'AT5G60640',
'e_value' => '2e-33',
'bit_score' => '138',
'alignment_length' => '465',
'identity_percentage' => '24.52',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00004G01260' => array(
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'e_value' => '3e-33',
'bit_score' => '138',
'alignment_length' => '443',
'identity_percentage' => '25.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'CM03G01810' => array(
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'e_value' => '3e-33',
'bit_score' => '137',
'alignment_length' => '486',
'identity_percentage' => '26.75',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'Naga_100052g13' => array(
'gene_id' => 'Naga_100052g13',
'e_value' => '4e-33',
'bit_score' => '136',
'alignment_length' => '474',
'identity_percentage' => '23.84',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OS04G35600' => array(
'gene_id' => 'OS04G35600',
'e_value' => '1e-32',
'bit_score' => '135',
'alignment_length' => '497',
'identity_percentage' => '26.76',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'AT3G54960' => array(
'gene_id' => 'AT3G54960',
'e_value' => '3e-32',
'bit_score' => '134',
'alignment_length' => '444',
'identity_percentage' => '25.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ATR_00186G00150' => array(
'gene_id' => 'ATR_00186G00150',
'e_value' => '5e-32',
'bit_score' => '133',
'alignment_length' => '508',
'identity_percentage' => '24.80',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'ATR_00175G00360' => array(
'gene_id' => 'ATR_00175G00360',
'e_value' => '1e-31',
'bit_score' => '132',
'alignment_length' => '469',
'identity_percentage' => '25.59',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ES0164G00180' => array(
'gene_id' => 'ES0164G00180',
'e_value' => '1e-31',
'bit_score' => '131',
'alignment_length' => '492',
'identity_percentage' => '26.02',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'CV00G31820' => array(
'gene_id' => 'CV00G31820',
'e_value' => '1e-30',
'bit_score' => '129',
'alignment_length' => '472',
'identity_percentage' => '24.79',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'OS02G01010' => array(
'gene_id' => 'OS02G01010',
'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '487',
'identity_percentage' => '26.08',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSG00000155660' => array(
'gene_id' => 'ENSG00000155660',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '486',
'identity_percentage' => '25.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P039686'
)
),
'ENSMUSG00000025823' => array(
'gene_id' => 'ENSMUSG00000025823',
'e_value' => '2e-30',
'bit_score' => '129',
'alignment_length' => '493',
'identity_percentage' => '25.35',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P039686'
)
),
'AT1G77510' => array(
'gene_id' => 'AT1G77510',
'e_value' => '4e-30',
'bit_score' => '127',
'alignment_length' => '463',
'identity_percentage' => '24.62',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'OM_03G02840' => array(
'gene_id' => 'OM_03G02840',
'e_value' => '7e-30',
'bit_score' => '127',
'alignment_length' => '499',
'identity_percentage' => '23.25',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OL05G02640' => array(
'gene_id' => 'OL05G02640',
'e_value' => '8e-30',
'bit_score' => '125',
'alignment_length' => '453',
'identity_percentage' => '23.18',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00122G00030' => array(
'gene_id' => 'PP00122G00030',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '458',
'identity_percentage' => '23.14',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049423'
)
),
'PP00077G00280' => array(
'gene_id' => 'PP00077G00280',
'e_value' => '4e-29',
'bit_score' => '125',
'alignment_length' => '433',
'identity_percentage' => '23.79',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'BPRRCC1105_03G03360' => array(
'gene_id' => 'BPRRCC1105_03G03360',
'e_value' => '2e-28',
'bit_score' => '123',
'alignment_length' => '472',
'identity_percentage' => '23.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OT_05G02710' => array(
'gene_id' => 'OT_05G02710',
'e_value' => '1e-27',
'bit_score' => '120',
'alignment_length' => '462',
'identity_percentage' => '24.89',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AT1G21750' => array(
'gene_id' => 'AT1G21750',
'e_value' => '2e-27',
'bit_score' => '119',
'alignment_length' => '465',
'identity_percentage' => '23.66',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'WBGene00003964' => array(
'gene_id' => 'WBGene00003964',
'e_value' => '4e-27',
'bit_score' => '118',
'alignment_length' => '475',
'identity_percentage' => '24.42',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P064550'
)
),
'OS11G09280' => array(
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'e_value' => '1e-26',
'bit_score' => '117',
'alignment_length' => '465',
'identity_percentage' => '26.45',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'FBgn0033663' => array(
'gene_id' => 'FBgn0033663',
'e_value' => '2e-25',
'bit_score' => '114',
'alignment_length' => '468',
'identity_percentage' => '23.93',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P064550'
)
),
'YCL043C' => array(
'gene_id' => 'YCL043C',
'e_value' => '4e-25',
'bit_score' => '113',
'alignment_length' => '475',
'identity_percentage' => '25.68',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'WBGene00015752' => array(
'gene_id' => 'WBGene00015752',
'e_value' => '6e-25',
'bit_score' => '113',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P039686'
)
),
'ORCC809_05G02600' => array(
'gene_id' => 'ORCC809_05G02600',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '464',
'identity_percentage' => '22.84',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'OS02G34940' => array(
'gene_id' => 'OS02G34940',
'e_value' => '2e-24',
'bit_score' => '111',
'alignment_length' => '443',
'identity_percentage' => '26.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'PP00046G00210' => array(
'gene_id' => 'PP00046G00210',
'e_value' => '3e-24',
'bit_score' => '110',
'alignment_length' => '465',
'identity_percentage' => '24.73',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'RCC4223.07g00280' => array(
'gene_id' => 'RCC4223.07g00280',
'e_value' => '9e-24',
'bit_score' => '108',
'alignment_length' => '480',
'identity_percentage' => '21.04',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ccr195600' => array(
'gene_id' => 'ccr195600',
'e_value' => '1e-23',
'bit_score' => '108',
'alignment_length' => '473',
'identity_percentage' => '26.00',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00046G00200' => array(
'gene_id' => 'PP00046G00200',
'e_value' => '2e-23',
'bit_score' => '107',
'alignment_length' => '441',
'identity_percentage' => '25.40',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PI00G04410' => array(
'gene_id' => 'PI00G04410',
'e_value' => '4e-23',
'bit_score' => '107',
'alignment_length' => '468',
'identity_percentage' => '22.86',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'MP05G04320' => array(
'gene_id' => 'MP05G04320',
'e_value' => '4e-22',
'bit_score' => '103',
'alignment_length' => '511',
'identity_percentage' => '21.53',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'HE0000G45590' => array(
'gene_id' => 'HE0000G45590',
'e_value' => '1e-20',
'bit_score' => '100',
'alignment_length' => '475',
'identity_percentage' => '21.89',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'DDB_G0291434' => array(
'gene_id' => 'DDB_G0291434',
'e_value' => '9e-20',
'bit_score' => '96.7',
'alignment_length' => '450',
'identity_percentage' => '22.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ATR_00109G00370' => array(
'gene_id' => 'ATR_00109G00370',
'e_value' => '2e-19',
'bit_score' => '95.9',
'alignment_length' => '448',
'identity_percentage' => '20.09',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'ccr114860' => array(
'gene_id' => 'ccr114860',
'e_value' => '5e-18',
'bit_score' => '91.3',
'alignment_length' => '493',
'identity_percentage' => '23.33',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'AT1G52260' => array(
'gene_id' => 'AT1G52260',
'e_value' => '3e-17',
'bit_score' => '89.0',
'alignment_length' => '439',
'identity_percentage' => '19.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'pte452030' => array(
'gene_id' => 'pte452030',
'e_value' => '5e-17',
'bit_score' => '88.6',
'alignment_length' => '228',
'identity_percentage' => '25.88',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'CNC64A_005G01330' => array(
'gene_id' => 'CNC64A_005G01330',
'e_value' => '1e-16',
'bit_score' => '87.0',
'alignment_length' => '419',
'identity_percentage' => '22.67',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'OS06G06790' => array(
'gene_id' => 'OS06G06790',
'e_value' => '2e-16',
'bit_score' => '86.3',
'alignment_length' => '430',
'identity_percentage' => '20.93',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'ES0535G00010' => array(
'gene_id' => 'ES0535G00010',
'e_value' => '5e-16',
'bit_score' => '85.9',
'alignment_length' => '149',
'identity_percentage' => '30.87',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P194762'
)
),
'BPRRCC1105_07G03480' => array(
'gene_id' => 'BPRRCC1105_07G03480',
'e_value' => '6e-16',
'bit_score' => '85.1',
'alignment_length' => '271',
'identity_percentage' => '26.94',
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'PP00210G00500' => array(
'gene_id' => 'PP00210G00500',
'e_value' => '2e-15',
'bit_score' => '83.6',
'alignment_length' => '160',
'identity_percentage' => '30.63',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049423'
)
),
'MRCC299_04G03740' => array(
'gene_id' => 'MRCC299_04G03740',
'e_value' => '2e-15',
'bit_score' => '79.3',
'alignment_length' => '186',
'identity_percentage' => '27.42',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P007694'
)
),
'pte151310' => array(
'gene_id' => 'pte151310',
'e_value' => '2e-15',
'bit_score' => '82.4',
'alignment_length' => '456',
'identity_percentage' => '21.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P034942',
'ORTHOFAM' => 'ORTHO03P047102'
)
),
'pte163150' => array(
'gene_id' => 'pte163150',
'e_value' => '6e-15',
'bit_score' => '81.6',
'alignment_length' => '470',
'identity_percentage' => '20.21',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P051568'
)
),
'ES0062G00620' => array(
'gene_id' => 'ES0062G00620',
'e_value' => '8e-15',
'bit_score' => '80.5',
'alignment_length' => '205',
'identity_percentage' => '27.80',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte51030' => array(
'gene_id' => 'pte51030',
'e_value' => '9e-15',
'bit_score' => '81.3',
'alignment_length' => '216',
'identity_percentage' => '25.93',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'WBGene00014807' => array(
'gene_id' => 'WBGene00014807',
'e_value' => '2e-14',
'bit_score' => '78.6',
'alignment_length' => '228',
'identity_percentage' => '29.39',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P100622'
)
),
'pte94910' => array(
'gene_id' => 'pte94910',
'e_value' => '3e-14',
'bit_score' => '79.7',
'alignment_length' => '226',
'identity_percentage' => '28.76',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'OS01G23740' => array(
'gene_id' => 'OS01G23740',
'e_value' => '1e-13',
'bit_score' => '76.6',
'alignment_length' => '174',
'identity_percentage' => '29.89',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'DDB_G0276141' => array(
'gene_id' => 'DDB_G0276141',
'e_value' => '2e-13',
'bit_score' => '75.9',
'alignment_length' => '255',
'identity_percentage' => '27.45',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'ES0048G00490' => array(
'gene_id' => 'ES0048G00490',
'e_value' => '3e-13',
'bit_score' => '76.6',
'alignment_length' => '108',
'identity_percentage' => '32.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P128574'
)
),
'pte495660' => array(
'gene_id' => 'pte495660',
'e_value' => '3e-13',
'bit_score' => '76.3',
'alignment_length' => '477',
'identity_percentage' => '20.34',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P051568'
)
),
'pte57440' => array(
'gene_id' => 'pte57440',
'e_value' => '5e-13',
'bit_score' => '75.9',
'alignment_length' => '217',
'identity_percentage' => '23.50',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'pte776650' => array(
'gene_id' => 'pte776650',
'e_value' => '2e-12',
'bit_score' => '73.2',
'alignment_length' => '473',
'identity_percentage' => '22.20',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P034942',
'ORTHOFAM' => 'ORTHO03P047102'
)
),
'AA0013G02850' => array(
'gene_id' => 'AA0013G02850',
'e_value' => '3e-12',
'bit_score' => '71.2',
'alignment_length' => '113',
'identity_percentage' => '36.28',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'AT3G16110' => array(
'gene_id' => 'AT3G16110',
'e_value' => '4e-12',
'bit_score' => '72.8',
'alignment_length' => '447',
'identity_percentage' => '18.57',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P014312'
)
),
'OS05G06430' => array(
'gene_id' => 'OS05G06430',
'e_value' => '4e-12',
'bit_score' => '72.0',
'alignment_length' => '172',
'identity_percentage' => '28.49',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'gsu117020' => array(
'gene_id' => 'gsu117020',
'e_value' => '9e-12',
'bit_score' => '70.9',
'alignment_length' => '199',
'identity_percentage' => '29.15',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'ATR_00057G00440' => array(
'gene_id' => 'ATR_00057G00440',
'e_value' => '1e-11',
'bit_score' => '70.5',
'alignment_length' => '201',
'identity_percentage' => '27.86',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'AT2G47470' => array(
'gene_id' => 'AT2G47470',
'e_value' => '2e-11',
'bit_score' => '69.7',
'alignment_length' => '160',
'identity_percentage' => '28.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'phs111000' => array(
'gene_id' => 'phs111000',
'e_value' => '7e-11',
'bit_score' => '68.2',
'alignment_length' => '158',
'identity_percentage' => '29.75',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'TP03G07960' => array(
'gene_id' => 'TP03G07960',
'e_value' => '1e-10',
'bit_score' => '65.9',
'alignment_length' => '145',
'identity_percentage' => '26.90',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'MP08G04160' => array(
'gene_id' => 'MP08G04160',
'e_value' => '1e-10',
'bit_score' => '65.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'SPAC17H9.14c' => array(
'gene_id' => 'SPAC17H9.14c',
'e_value' => '2e-10',
'bit_score' => '66.6',
'alignment_length' => '134',
'identity_percentage' => '32.84',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'Naga_100022g4' => array(
'gene_id' => 'Naga_100022g4',
'e_value' => '6e-10',
'bit_score' => '65.1',
'alignment_length' => '202',
'identity_percentage' => '26.73',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'MP05G00650' => array(
'gene_id' => 'MP05G00650',
'e_value' => '8e-10',
'bit_score' => '62.8',
'alignment_length' => '113',
'identity_percentage' => '31.86',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'MRCC299_06G06360' => array(
'gene_id' => 'MRCC299_06G06360',
'e_value' => '1e-09',
'bit_score' => '62.4',
'alignment_length' => '163',
'identity_percentage' => '30.67',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P010691'
)
),
'PP00201G00570' => array(
'gene_id' => 'PP00201G00570',
'e_value' => '1e-09',
'bit_score' => '63.9',
'alignment_length' => '102',
'identity_percentage' => '29.41',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte760940' => array(
'gene_id' => 'pte760940',
'e_value' => '2e-09',
'bit_score' => '64.3',
'alignment_length' => '452',
'identity_percentage' => '20.58',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P046031'
)
),
'pte636330' => array(
'gene_id' => 'pte636330',
'e_value' => '6e-09',
'bit_score' => '62.0',
'alignment_length' => '332',
'identity_percentage' => '22.29',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049937'
)
),
'OM_02G03300' => array(
'gene_id' => 'OM_02G03300',
'e_value' => '6e-09',
'bit_score' => '60.5',
'alignment_length' => '186',
'identity_percentage' => '26.34',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'pte370490' => array(
'gene_id' => 'pte370490',
'e_value' => '7e-09',
'bit_score' => '59.3',
'alignment_length' => '113',
'identity_percentage' => '28.32',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'pte229720' => array(
'gene_id' => 'pte229720',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '423',
'identity_percentage' => '21.04',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P030752'
)
),
'FBgn0030329' => array(
'gene_id' => 'FBgn0030329',
'e_value' => '7e-09',
'bit_score' => '62.0',
'alignment_length' => '95',
'identity_percentage' => '33.68',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'pte177250' => array(
'gene_id' => 'pte177250',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '422',
'identity_percentage' => '20.85',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P030752'
)
),
'PI00G53680' => array(
'gene_id' => 'PI00G53680',
'e_value' => '7e-09',
'bit_score' => '62.4',
'alignment_length' => '443',
'identity_percentage' => '22.35',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070420'
)
),
'gsu94330' => array(
'gene_id' => 'gsu94330',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '111',
'identity_percentage' => '30.63',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte688690' => array(
'gene_id' => 'pte688690',
'e_value' => '1e-08',
'bit_score' => '61.6',
'alignment_length' => '266',
'identity_percentage' => '25.94',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P046031'
)
),
'ORCC809_04G02160' => array(
'gene_id' => 'ORCC809_04G02160',
'e_value' => '2e-08',
'bit_score' => '58.9',
'alignment_length' => '132',
'identity_percentage' => '26.52',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'MRCC299_11G01890' => array(
'gene_id' => 'MRCC299_11G01890',
'e_value' => '4e-08',
'bit_score' => '58.2',
'alignment_length' => '179',
'identity_percentage' => '27.37',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'OT_04G03100' => array(
'gene_id' => 'OT_04G03100',
'e_value' => '8e-08',
'bit_score' => '57.0',
'alignment_length' => '191',
'identity_percentage' => '25.13',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P004904'
)
),
'gsu23460' => array(
'gene_id' => 'gsu23460',
'e_value' => '9e-08',
'bit_score' => '56.2',
'alignment_length' => '116',
'identity_percentage' => '30.17',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P082260'
)
),
'pte61460' => array(
'gene_id' => 'pte61460',
'e_value' => '1e-07',
'bit_score' => '55.8',
'alignment_length' => '117',
'identity_percentage' => '23.08',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P011816'
)
),
'YDR518W' => array(
'gene_id' => 'YDR518W',
'e_value' => '2e-07',
'bit_score' => '57.8',
'alignment_length' => '502',
'identity_percentage' => '22.51',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSG00000239264' => array(
'gene_id' => 'ENSG00000239264',
'e_value' => '2e-07',
'bit_score' => '57.4',
'alignment_length' => '135',
'identity_percentage' => '28.89',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'gsu40920' => array(
'gene_id' => 'gsu40920',
'e_value' => '4e-07',
'bit_score' => '57.0',
'alignment_length' => '504',
'identity_percentage' => '19.25',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'ENSG00000259040' => array(
'gene_id' => 'ENSG00000259040',
'e_value' => '4e-07',
'bit_score' => '56.2',
'alignment_length' => '196',
'identity_percentage' => '25.00',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'PTI_01G04420' => array(
'gene_id' => 'PTI_01G04420',
'e_value' => '5e-07',
'bit_score' => '54.7',
'alignment_length' => '111',
'identity_percentage' => '29.73',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P012533'
)
),
'TP08G03970' => array(
'gene_id' => 'TP08G03970',
'e_value' => '5e-07',
'bit_score' => '53.5',
'alignment_length' => '96',
'identity_percentage' => '34.38',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P009151'
)
),
'pte782140' => array(
'gene_id' => 'pte782140',
'e_value' => '6e-07',
'bit_score' => '56.2',
'alignment_length' => '134',
'identity_percentage' => '30.60',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P003417'
)
),
'CNC64A_162G00010' => array(
'gene_id' => 'CNC64A_162G00010',
'e_value' => '7e-07',
'bit_score' => '53.1',
'alignment_length' => '112',
'identity_percentage' => '29.46',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
),
'AP00G35970' => array(
'gene_id' => 'AP00G35970',
'e_value' => '8e-07',
'bit_score' => '56.2',
'alignment_length' => '425',
'identity_percentage' => '20.47',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P001412'
)
),
'pte351710' => array(
'gene_id' => 'pte351710',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '29.06',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P050436'
)
),
'pte436300' => array(
'gene_id' => 'pte436300',
'e_value' => '1e-06',
'bit_score' => '52.8',
'alignment_length' => '117',
'identity_percentage' => '32.48',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P050436'
)
),
'ccr41820' => array(
'gene_id' => 'ccr41820',
'e_value' => '1e-06',
'bit_score' => '54.7',
'alignment_length' => '95',
'identity_percentage' => '29.47',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P005228'
)
),
'pte561650' => array(
'gene_id' => 'pte561650',
'e_value' => '2e-06',
'bit_score' => '54.7',
'alignment_length' => '328',
'identity_percentage' => '19.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P049937'
)
),
'OS03G17860' => array(
'gene_id' => 'OS03G17860',
'e_value' => '2e-06',
'bit_score' => '51.6',
'alignment_length' => '104',
'identity_percentage' => '35.58',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
),
'PI00G01450' => array(
'gene_id' => 'PI00G01450',
'e_value' => '3e-06',
'bit_score' => '53.1',
'alignment_length' => '126',
'identity_percentage' => '30.95',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P013064'
)
),
'RCC4223.02g00750' => array(
'gene_id' => 'RCC4223.02g00750',
'e_value' => '3e-06',
'bit_score' => '54.3',
'alignment_length' => '434',
'identity_percentage' => '21.89',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P070420'
)
),
'pte705400' => array(
'gene_id' => 'pte705400',
'e_value' => '3e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P009151'
)
),
'pte411900' => array(
'gene_id' => 'pte411900',
'e_value' => '4e-06',
'bit_score' => '53.5',
'alignment_length' => '112',
'identity_percentage' => '30.36',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P009151'
)
),
'PP00077G00860' => array(
'gene_id' => 'PP00077G00860',
'e_value' => '7e-06',
'bit_score' => '50.4',
'alignment_length' => '90',
'identity_percentage' => '31.11',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
)
)
$similarity_hits_species = array(
'hom' => array(
(int) 0 => 'ENSG00000169340',
(int) 1 => 'ENSG00000185624',
(int) 2 => 'ENSG00000155660',
(int) 3 => 'ENSG00000239264',
(int) 4 => 'ENSG00000259040'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000030968',
(int) 1 => 'ENSMUSG00000024184',
(int) 2 => 'ENSMUSG00000025823'
),
'cel' => array(
(int) 0 => 'WBGene00003963',
(int) 1 => 'WBGene00003962',
(int) 2 => 'WBGene00003964',
(int) 3 => 'WBGene00015752',
(int) 4 => 'WBGene00014807'
),
'drm' => array(
(int) 0 => 'FBgn0014002',
(int) 1 => 'FBgn0033663',
(int) 2 => 'FBgn0030329'
),
'vca' => array(
(int) 0 => 'VC00G34650'
),
'ppa' => array(
(int) 0 => 'PP00422G00050',
(int) 1 => 'PP00003G01330',
(int) 2 => 'PP00039G00940',
(int) 3 => 'PP00083G01260',
(int) 4 => 'PP00407G00290',
(int) 5 => 'PP00004G01260',
(int) 6 => 'PP00122G00030',
(int) 7 => 'PP00077G00280',
(int) 8 => 'PP00046G00210',
(int) 9 => 'PP00046G00200',
(int) 10 => 'PP00210G00500',
(int) 11 => 'PP00201G00570',
(int) 12 => 'PP00077G00860'
),
'pte' => array(
(int) 0 => 'pte30590',
(int) 1 => 'pte452030',
(int) 2 => 'pte151310',
(int) 3 => 'pte163150',
(int) 4 => 'pte51030',
(int) 5 => 'pte94910',
(int) 6 => 'pte495660',
(int) 7 => 'pte57440',
(int) 8 => 'pte776650',
(int) 9 => 'pte760940',
(int) 10 => 'pte636330',
(int) 11 => 'pte370490',
(int) 12 => 'pte229720',
(int) 13 => 'pte177250',
(int) 14 => 'pte688690',
(int) 15 => 'pte61460',
(int) 16 => 'pte782140',
(int) 17 => 'pte351710',
(int) 18 => 'pte436300',
(int) 19 => 'pte561650',
(int) 20 => 'pte705400',
(int) 21 => 'pte411900'
),
'scp' => array(
(int) 0 => 'SPAC1F5.02',
(int) 1 => 'SPAC17H9.14c'
),
'cre' => array(
(int) 0 => 'CR02G03440'
),
'acg' => array(
(int) 0 => 'AC00G57770'
),
'ath' => array(
(int) 0 => 'AT5G60640',
(int) 1 => 'AT3G54960',
(int) 2 => 'AT1G77510',
(int) 3 => 'AT1G21750',
(int) 4 => 'AT1G52260',
(int) 5 => 'AT3G16110',
(int) 6 => 'AT2G47470'
),
'cme' => array(
(int) 0 => 'CM03G01810'
),
'nga' => array(
(int) 0 => 'Naga_100052g13',
(int) 1 => 'Naga_100022g4'
),
'osa' => array(
(int) 0 => 'OS04G35600',
(int) 1 => 'OS02G01010',
(int) 2 => 'OS11G09280',
(int) 3 => 'OS02G34940',
(int) 4 => 'OS06G06790',
(int) 5 => 'OS01G23740',
(int) 6 => 'OS05G06430',
(int) 7 => 'OS03G17860'
),
'atr' => array(
(int) 0 => 'ATR_00186G00150',
(int) 1 => 'ATR_00175G00360',
(int) 2 => 'ATR_00109G00370',
(int) 3 => 'ATR_00057G00440'
),
'esi' => array(
(int) 0 => 'ES0164G00180',
(int) 1 => 'ES0535G00010',
(int) 2 => 'ES0062G00620',
(int) 3 => 'ES0048G00490'
),
'cvu' => array(
(int) 0 => 'CV00G31820'
),
'ome' => array(
(int) 0 => 'OM_03G02840',
(int) 1 => 'OM_02G03300'
),
'olu' => array(
(int) 0 => 'OL05G02640'
),
'bprrcc1105' => array(
(int) 0 => 'BPRRCC1105_03G03360',
(int) 1 => 'BPRRCC1105_07G03480'
),
'ota' => array(
(int) 0 => 'OT_05G02710',
(int) 1 => 'OT_04G03100'
),
'sac' => array(
(int) 0 => 'YCL043C',
(int) 1 => 'YDR518W'
),
'orcc809' => array(
(int) 0 => 'ORCC809_05G02600',
(int) 1 => 'ORCC809_04G02160'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.07g00280',
(int) 1 => 'RCC4223.02g00750'
),
'ccr' => array(
(int) 0 => 'ccr195600',
(int) 1 => 'ccr114860',
(int) 2 => 'ccr41820'
),
'pse3' => array(
(int) 0 => 'PI00G04410',
(int) 1 => 'PI00G53680',
(int) 2 => 'PI00G01450'
),
'mpu' => array(
(int) 0 => 'MP05G04320',
(int) 1 => 'MP08G04160',
(int) 2 => 'MP05G00650'
),
'hsp' => array(
(int) 0 => 'HE0000G45590'
),
'ddi' => array(
(int) 0 => 'DDB_G0291434',
(int) 1 => 'DDB_G0276141'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_005G01330'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_04G03740',
(int) 1 => 'MRCC299_06G06360',
(int) 2 => 'MRCC299_11G01890'
),
'aan' => array(
(int) 0 => 'AA0013G02850'
),
'gsu' => array(
(int) 0 => 'gsu117020',
(int) 1 => 'gsu94330',
(int) 2 => 'gsu23460',
(int) 3 => 'gsu40920'
),
'phs' => array(
(int) 0 => 'phs111000'
),
'tps' => array(
(int) 0 => 'TP03G07960',
(int) 1 => 'TP08G03970'
),
'ptri' => array(
(int) 0 => 'PTI_01G04420'
),
'apr' => array(
(int) 0 => 'AP00G35970'
)
)
$gene_id = 'ENSG00000169340'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'ENSG00000169340'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'MRCC299_09G00420'
$gf_placeholder = 'HOM03P008929'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_162G00010',
'e_value' => '7e-07',
'bit_score' => '53.1',
'alignment_length' => '112',
'identity_percentage' => '29.46',
'gf' => array(
'HOMFAM' => 'HOM03P000075',
'ORTHOFAM' => 'ORTHO03P008584'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_162G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
7e-07 |
53.1 |
112 |
29.46 |
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench