|
CNC64A_708G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'DDB_G0286321' => array(
'gene_id' => 'DDB_G0286321',
'e_value' => '0.0',
'bit_score' => '1139',
'alignment_length' => '558',
'identity_percentage' => '100.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0286277' => array(
'gene_id' => 'DDB_G0286277',
'e_value' => '0.0',
'bit_score' => '568',
'alignment_length' => '437',
'identity_percentage' => '65.22',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0284239' => array(
'gene_id' => 'DDB_G0284239',
'e_value' => '2e-162',
'bit_score' => '486',
'alignment_length' => '441',
'identity_percentage' => '56.24',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271134' => array(
'gene_id' => 'DDB_G0271134',
'e_value' => '2e-155',
'bit_score' => '468',
'alignment_length' => '465',
'identity_percentage' => '52.69',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271314' => array(
'gene_id' => 'DDB_G0271314',
'e_value' => '3e-154',
'bit_score' => '457',
'alignment_length' => '459',
'identity_percentage' => '52.29',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0284295' => array(
'gene_id' => 'DDB_G0284295',
'e_value' => '1e-138',
'bit_score' => '417',
'alignment_length' => '431',
'identity_percentage' => '51.28',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'AC00G88310' => array(
'gene_id' => 'AC00G88310',
'e_value' => '1e-81',
'bit_score' => '269',
'alignment_length' => '453',
'identity_percentage' => '36.20',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AT2G32990' => array(
'gene_id' => 'AT2G32990',
'e_value' => '7e-81',
'bit_score' => '269',
'alignment_length' => '468',
'identity_percentage' => '36.97',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00037G01710' => array(
'gene_id' => 'PP00037G01710',
'e_value' => '2e-80',
'bit_score' => '271',
'alignment_length' => '567',
'identity_percentage' => '33.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00149G00070' => array(
'gene_id' => 'PP00149G00070',
'e_value' => '3e-77',
'bit_score' => '262',
'alignment_length' => '497',
'identity_percentage' => '35.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G19940' => array(
'gene_id' => 'AT1G19940',
'e_value' => '9e-77',
'bit_score' => '258',
'alignment_length' => '468',
'identity_percentage' => '37.18',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00159G00100' => array(
'gene_id' => 'ATR_00159G00100',
'e_value' => '1e-76',
'bit_score' => '260',
'alignment_length' => '497',
'identity_percentage' => '33.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CV00G18710' => array(
'gene_id' => 'CV00G18710',
'e_value' => '3e-76',
'bit_score' => '255',
'alignment_length' => '450',
'identity_percentage' => '34.00',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT4G11050' => array(
'gene_id' => 'AT4G11050',
'e_value' => '8e-75',
'bit_score' => '256',
'alignment_length' => '476',
'identity_percentage' => '35.50',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G37000' => array(
'gene_id' => 'AC00G37000',
'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '444',
'identity_percentage' => '34.68',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OS09G36350' => array(
'gene_id' => 'OS09G36350',
'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '483',
'identity_percentage' => '35.82',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00112G00110' => array(
'gene_id' => 'ATR_00112G00110',
'e_value' => '4e-74',
'bit_score' => '251',
'alignment_length' => '494',
'identity_percentage' => '35.63',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G75680' => array(
'gene_id' => 'AT1G75680',
'e_value' => '1e-73',
'bit_score' => '250',
'alignment_length' => '450',
'identity_percentage' => '37.78',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT1G64390' => array(
'gene_id' => 'AT1G64390',
'e_value' => '1e-73',
'bit_score' => '252',
'alignment_length' => '471',
'identity_percentage' => '35.03',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44550' => array(
'gene_id' => 'AT2G44550',
'e_value' => '2e-73',
'bit_score' => '249',
'alignment_length' => '463',
'identity_percentage' => '35.85',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS02G50490' => array(
'gene_id' => 'OS02G50490',
'e_value' => '2e-73',
'bit_score' => '250',
'alignment_length' => '479',
'identity_percentage' => '35.28',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44560' => array(
'gene_id' => 'AT2G44560',
'e_value' => '3e-73',
'bit_score' => '248',
'alignment_length' => '465',
'identity_percentage' => '35.91',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G29710' => array(
'gene_id' => 'HE0000G29710',
'e_value' => '3e-73',
'bit_score' => '247',
'alignment_length' => '453',
'identity_percentage' => '35.98',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44570' => array(
'gene_id' => 'AT2G44570',
'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '496',
'identity_percentage' => '32.86',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44540' => array(
'gene_id' => 'AT2G44540',
'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '488',
'identity_percentage' => '34.63',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS08G32940' => array(
'gene_id' => 'OS08G32940',
'e_value' => '5e-72',
'bit_score' => '246',
'alignment_length' => '473',
'identity_percentage' => '34.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS01G12070' => array(
'gene_id' => 'OS01G12070',
'e_value' => '1e-71',
'bit_score' => '248',
'alignment_length' => '472',
'identity_percentage' => '34.32',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS01G21070' => array(
'gene_id' => 'OS01G21070',
'e_value' => '1e-71',
'bit_score' => '244',
'alignment_length' => '465',
'identity_percentage' => '35.05',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100014g5' => array(
'gene_id' => 'Naga_100014g5',
'e_value' => '3e-71',
'bit_score' => '242',
'alignment_length' => '437',
'identity_percentage' => '37.07',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OS04G57860' => array(
'gene_id' => 'OS04G57860',
'e_value' => '3e-71',
'bit_score' => '246',
'alignment_length' => '480',
'identity_percentage' => '33.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00112G00090' => array(
'gene_id' => 'ATR_00112G00090',
'e_value' => '5e-71',
'bit_score' => '242',
'alignment_length' => '495',
'identity_percentage' => '35.15',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00100G00830' => array(
'gene_id' => 'PP00100G00830',
'e_value' => '7e-71',
'bit_score' => '242',
'alignment_length' => '496',
'identity_percentage' => '33.47',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS06G50140' => array(
'gene_id' => 'OS06G50140',
'e_value' => '2e-70',
'bit_score' => '241',
'alignment_length' => '474',
'identity_percentage' => '34.60',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G70710' => array(
'gene_id' => 'AT1G70710',
'e_value' => '3e-70',
'bit_score' => '240',
'alignment_length' => '470',
'identity_percentage' => '34.47',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G02290' => array(
'gene_id' => 'AT4G02290',
'e_value' => '3e-70',
'bit_score' => '241',
'alignment_length' => '471',
'identity_percentage' => '35.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00099G00510' => array(
'gene_id' => 'ATR_00099G00510',
'e_value' => '5e-70',
'bit_score' => '239',
'alignment_length' => '495',
'identity_percentage' => '33.54',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100360g3' => array(
'gene_id' => 'Naga_100360g3',
'e_value' => '6e-70',
'bit_score' => '239',
'alignment_length' => '426',
'identity_percentage' => '33.80',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OS05G12150' => array(
'gene_id' => 'OS05G12150',
'e_value' => '8e-70',
'bit_score' => '242',
'alignment_length' => '534',
'identity_percentage' => '30.71',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS01G12030' => array(
'gene_id' => 'OS01G12030',
'e_value' => '3e-69',
'bit_score' => '241',
'alignment_length' => '473',
'identity_percentage' => '34.04',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00053G00430' => array(
'gene_id' => 'ATR_00053G00430',
'e_value' => '6e-69',
'bit_score' => '237',
'alignment_length' => '471',
'identity_percentage' => '33.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G02800' => array(
'gene_id' => 'AT1G02800',
'e_value' => '7e-69',
'bit_score' => '237',
'alignment_length' => '462',
'identity_percentage' => '36.15',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS09G23084' => array(
'gene_id' => 'OS09G23084',
'e_value' => '1e-68',
'bit_score' => '237',
'alignment_length' => '479',
'identity_percentage' => '34.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00099G00500' => array(
'gene_id' => 'ATR_00099G00500',
'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '490',
'identity_percentage' => '35.92',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00010G01270' => array(
'gene_id' => 'ATR_00010G01270',
'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '478',
'identity_percentage' => '32.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00024G02540' => array(
'gene_id' => 'ATR_00024G02540',
'e_value' => '3e-68',
'bit_score' => '234',
'alignment_length' => '464',
'identity_percentage' => '35.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100054g30' => array(
'gene_id' => 'Naga_100054g30',
'e_value' => '6e-68',
'bit_score' => '234',
'alignment_length' => '427',
'identity_percentage' => '34.89',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G09740' => array(
'gene_id' => 'AT4G09740',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G23560' => array(
'gene_id' => 'AT4G23560',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.41',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00100G00730' => array(
'gene_id' => 'PP00100G00730',
'e_value' => '3e-67',
'bit_score' => '233',
'alignment_length' => '499',
'identity_percentage' => '33.87',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00053G00510' => array(
'gene_id' => 'PP00053G00510',
'e_value' => '1e-66',
'bit_score' => '234',
'alignment_length' => '510',
'identity_percentage' => '33.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00170G00040' => array(
'gene_id' => 'PP00170G00040',
'e_value' => '2e-66',
'bit_score' => '230',
'alignment_length' => '468',
'identity_percentage' => '33.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00176G00580' => array(
'gene_id' => 'PP00176G00580',
'e_value' => '3e-66',
'bit_score' => '233',
'alignment_length' => '516',
'identity_percentage' => '33.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G48930' => array(
'gene_id' => 'AT1G48930',
'e_value' => '4e-66',
'bit_score' => '232',
'alignment_length' => '473',
'identity_percentage' => '36.36',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT3G43860' => array(
'gene_id' => 'AT3G43860',
'e_value' => '1e-65',
'bit_score' => '228',
'alignment_length' => '488',
'identity_percentage' => '33.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS02G50040' => array(
'gene_id' => 'OS02G50040',
'e_value' => '2e-65',
'bit_score' => '228',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0283077' => array(
'gene_id' => 'DDB_G0283077',
'e_value' => '2e-65',
'bit_score' => '230',
'alignment_length' => '465',
'identity_percentage' => '34.19',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00027G01540' => array(
'gene_id' => 'ATR_00027G01540',
'e_value' => '2e-65',
'bit_score' => '227',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G23210' => array(
'gene_id' => 'AT1G23210',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '492',
'identity_percentage' => '31.30',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS02G03120' => array(
'gene_id' => 'OS02G03120',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '504',
'identity_percentage' => '31.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G14380' => array(
'gene_id' => 'AP00G14380',
'e_value' => '4e-65',
'bit_score' => '230',
'alignment_length' => '444',
'identity_percentage' => '35.14',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'OS02G05744' => array(
'gene_id' => 'OS02G05744',
'e_value' => '2e-64',
'bit_score' => '226',
'alignment_length' => '481',
'identity_percentage' => '32.64',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00308G00070' => array(
'gene_id' => 'PP00308G00070',
'e_value' => '2e-64',
'bit_score' => '225',
'alignment_length' => '485',
'identity_percentage' => '33.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00087G00860' => array(
'gene_id' => 'PP00087G00860',
'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '470',
'identity_percentage' => '34.26',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00080G00260' => array(
'gene_id' => 'PP00080G00260',
'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '466',
'identity_percentage' => '34.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00376G00130' => array(
'gene_id' => 'PP00376G00130',
'e_value' => '3e-64',
'bit_score' => '224',
'alignment_length' => '467',
'identity_percentage' => '33.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS08G29770' => array(
'gene_id' => 'OS08G29770',
'e_value' => '4e-64',
'bit_score' => '224',
'alignment_length' => '454',
'identity_percentage' => '33.92',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS06G14540' => array(
'gene_id' => 'OS06G14540',
'e_value' => '1e-63',
'bit_score' => '223',
'alignment_length' => '481',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00060G00520' => array(
'gene_id' => 'PP00060G00520',
'e_value' => '6e-63',
'bit_score' => '222',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00029G00790' => array(
'gene_id' => 'ATR_00029G00790',
'e_value' => '1e-62',
'bit_score' => '223',
'alignment_length' => '467',
'identity_percentage' => '34.90',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G71380' => array(
'gene_id' => 'AT1G71380',
'e_value' => '2e-62',
'bit_score' => '219',
'alignment_length' => '491',
'identity_percentage' => '34.01',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS09G36060' => array(
'gene_id' => 'OS09G36060',
'e_value' => '8e-62',
'bit_score' => '218',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00157G00210' => array(
'gene_id' => 'PP00157G00210',
'e_value' => '1e-61',
'bit_score' => '219',
'alignment_length' => '486',
'identity_percentage' => '34.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G22880' => array(
'gene_id' => 'AT1G22880',
'e_value' => '2e-61',
'bit_score' => '216',
'alignment_length' => '496',
'identity_percentage' => '34.48',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00018G01670' => array(
'gene_id' => 'ATR_00018G01670',
'e_value' => '6e-61',
'bit_score' => '215',
'alignment_length' => '426',
'identity_percentage' => '34.27',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT4G39010' => array(
'gene_id' => 'AT4G39010',
'e_value' => '7e-61',
'bit_score' => '215',
'alignment_length' => '474',
'identity_percentage' => '32.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS04G41970' => array(
'gene_id' => 'OS04G41970',
'e_value' => '1e-60',
'bit_score' => '217',
'alignment_length' => '486',
'identity_percentage' => '34.77',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS08G02220' => array(
'gene_id' => 'OS08G02220',
'e_value' => '3e-60',
'bit_score' => '214',
'alignment_length' => '480',
'identity_percentage' => '30.63',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0279995' => array(
'gene_id' => 'DDB_G0279995',
'e_value' => '3e-60',
'bit_score' => '219',
'alignment_length' => '472',
'identity_percentage' => '33.26',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'PI00G51860' => array(
'gene_id' => 'PI00G51860',
'e_value' => '9e-60',
'bit_score' => '213',
'alignment_length' => '452',
'identity_percentage' => '32.96',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PP00190G00010' => array(
'gene_id' => 'PP00190G00010',
'e_value' => '9e-60',
'bit_score' => '214',
'alignment_length' => '489',
'identity_percentage' => '34.97',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100747g2' => array(
'gene_id' => 'Naga_100747g2',
'e_value' => '1e-59',
'bit_score' => '212',
'alignment_length' => '451',
'identity_percentage' => '33.92',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'PP00035G01830' => array(
'gene_id' => 'PP00035G01830',
'e_value' => '3e-59',
'bit_score' => '213',
'alignment_length' => '487',
'identity_percentage' => '34.70',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00019G00560' => array(
'gene_id' => 'PP00019G00560',
'e_value' => '8e-59',
'bit_score' => '209',
'alignment_length' => '469',
'identity_percentage' => '33.48',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS04G36610' => array(
'gene_id' => 'OS04G36610',
'e_value' => '5e-58',
'bit_score' => '207',
'alignment_length' => '468',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'CV00G58180' => array(
'gene_id' => 'CV00G58180',
'e_value' => '7e-58',
'bit_score' => '210',
'alignment_length' => '489',
'identity_percentage' => '30.47',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS02G53820' => array(
'gene_id' => 'OS02G53820',
'e_value' => '3e-56',
'bit_score' => '202',
'alignment_length' => '462',
'identity_percentage' => '30.52',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT4G24260' => array(
'gene_id' => 'AT4G24260',
'e_value' => '6e-56',
'bit_score' => '204',
'alignment_length' => '495',
'identity_percentage' => '32.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G49720' => array(
'gene_id' => 'AT5G49720',
'e_value' => '1e-55',
'bit_score' => '203',
'alignment_length' => '490',
'identity_percentage' => '34.29',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00015G02420' => array(
'gene_id' => 'PP00015G02420',
'e_value' => '2e-55',
'bit_score' => '202',
'alignment_length' => '473',
'identity_percentage' => '32.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT4G39000' => array(
'gene_id' => 'AT4G39000',
'e_value' => '3e-55',
'bit_score' => '199',
'alignment_length' => '510',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS05G03840' => array(
'gene_id' => 'OS05G03840',
'e_value' => '5e-55',
'bit_score' => '199',
'alignment_length' => '519',
'identity_percentage' => '28.90',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS03G52630' => array(
'gene_id' => 'OS03G52630',
'e_value' => '8e-55',
'bit_score' => '201',
'alignment_length' => '519',
'identity_percentage' => '32.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G53560' => array(
'gene_id' => 'HE0000G53560',
'e_value' => '5e-54',
'bit_score' => '195',
'alignment_length' => '445',
'identity_percentage' => '30.11',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OS03G21210' => array(
'gene_id' => 'OS03G21210',
'e_value' => '2e-52',
'bit_score' => '194',
'alignment_length' => '482',
'identity_percentage' => '32.16',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00071G00350' => array(
'gene_id' => 'ATR_00071G00350',
'e_value' => '1e-50',
'bit_score' => '189',
'alignment_length' => '500',
'identity_percentage' => '33.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'VC00G86050' => array(
'gene_id' => 'VC00G86050',
'e_value' => '2e-50',
'bit_score' => '189',
'alignment_length' => '518',
'identity_percentage' => '30.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'AC00G15120' => array(
'gene_id' => 'AC00G15120',
'e_value' => '4e-50',
'bit_score' => '191',
'alignment_length' => '476',
'identity_percentage' => '30.88',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.08g01580' => array(
'gene_id' => 'RCC4223.08g01580',
'e_value' => '7e-50',
'bit_score' => '185',
'alignment_length' => '469',
'identity_percentage' => '30.92',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PP00100G00740' => array(
'gene_id' => 'PP00100G00740',
'e_value' => '1e-49',
'bit_score' => '185',
'alignment_length' => '517',
'identity_percentage' => '29.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G86060' => array(
'gene_id' => 'VC00G86060',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '518',
'identity_percentage' => '31.08',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'PP00064G00580' => array(
'gene_id' => 'PP00064G00580',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '490',
'identity_percentage' => '32.86',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G65610' => array(
'gene_id' => 'AT1G65610',
'e_value' => '2e-49',
'bit_score' => '185',
'alignment_length' => '491',
'identity_percentage' => '31.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AP00G47660' => array(
'gene_id' => 'AP00G47660',
'e_value' => '2e-48',
'bit_score' => '181',
'alignment_length' => '449',
'identity_percentage' => '30.29',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00071G00690' => array(
'gene_id' => 'ATR_00071G00690',
'e_value' => '2e-48',
'bit_score' => '182',
'alignment_length' => '503',
'identity_percentage' => '31.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CR17G07600' => array(
'gene_id' => 'CR17G07600',
'e_value' => '1e-47',
'bit_score' => '181',
'alignment_length' => '500',
'identity_percentage' => '30.60',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G00250' => array(
'gene_id' => 'CNC64A_004G00250',
'e_value' => '6e-45',
'bit_score' => '172',
'alignment_length' => '448',
'identity_percentage' => '29.24',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'AC00G54710' => array(
'gene_id' => 'AC00G54710',
'e_value' => '2e-44',
'bit_score' => '174',
'alignment_length' => '466',
'identity_percentage' => '30.47',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_010G00230' => array(
'gene_id' => 'CNC64A_010G00230',
'e_value' => '1e-43',
'bit_score' => '168',
'alignment_length' => '456',
'identity_percentage' => '26.97',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CR17G07580' => array(
'gene_id' => 'CR17G07580',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '504',
'identity_percentage' => '30.75',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G00230' => array(
'gene_id' => 'CNC64A_004G00230',
'e_value' => '3e-43',
'bit_score' => '165',
'alignment_length' => '475',
'identity_percentage' => '27.58',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'AP00G47670' => array(
'gene_id' => 'AP00G47670',
'e_value' => '4e-40',
'bit_score' => '154',
'alignment_length' => '380',
'identity_percentage' => '29.21',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CV00G13860' => array(
'gene_id' => 'CV00G13860',
'e_value' => '4e-40',
'bit_score' => '161',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G28250' => array(
'gene_id' => 'CV00G28250',
'e_value' => '2e-39',
'bit_score' => '159',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00003G00840' => array(
'gene_id' => 'ATR_00003G00840',
'e_value' => '3e-39',
'bit_score' => '152',
'alignment_length' => '341',
'identity_percentage' => '34.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AP00G47650' => array(
'gene_id' => 'AP00G47650',
'e_value' => '7e-39',
'bit_score' => '152',
'alignment_length' => '400',
'identity_percentage' => '29.75',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'AT4G38990' => array(
'gene_id' => 'AT4G38990',
'e_value' => '1e-38',
'bit_score' => '149',
'alignment_length' => '342',
'identity_percentage' => '32.46',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01080' => array(
'gene_id' => 'ATR_00007G01080',
'e_value' => '6e-38',
'bit_score' => '143',
'alignment_length' => '184',
'identity_percentage' => '40.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AC00G30000' => array(
'gene_id' => 'AC00G30000',
'e_value' => '4e-37',
'bit_score' => '152',
'alignment_length' => '458',
'identity_percentage' => '30.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CR06G04900' => array(
'gene_id' => 'CR06G04900',
'e_value' => '4e-37',
'bit_score' => '151',
'alignment_length' => '487',
'identity_percentage' => '27.10',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00066G01210' => array(
'gene_id' => 'ATR_00066G01210',
'e_value' => '1e-35',
'bit_score' => '145',
'alignment_length' => '250',
'identity_percentage' => '37.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PI00G21600' => array(
'gene_id' => 'PI00G21600',
'e_value' => '2e-35',
'bit_score' => '145',
'alignment_length' => '465',
'identity_percentage' => '30.75',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g11150' => array(
'gene_id' => 'RCC4223.02g11150',
'e_value' => '2e-35',
'bit_score' => '144',
'alignment_length' => '465',
'identity_percentage' => '29.03',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'AP00G63720' => array(
'gene_id' => 'AP00G63720',
'e_value' => '5e-35',
'bit_score' => '145',
'alignment_length' => '452',
'identity_percentage' => '26.77',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'PP00020G01840' => array(
'gene_id' => 'PP00020G01840',
'e_value' => '5e-35',
'bit_score' => '139',
'alignment_length' => '391',
'identity_percentage' => '28.90',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01050' => array(
'gene_id' => 'ATR_00007G01050',
'e_value' => '8e-35',
'bit_score' => '135',
'alignment_length' => '188',
'identity_percentage' => '42.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CV00G01670' => array(
'gene_id' => 'CV00G01670',
'e_value' => '5e-34',
'bit_score' => '142',
'alignment_length' => '483',
'identity_percentage' => '26.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G83580' => array(
'gene_id' => 'CV00G83580',
'e_value' => '1e-33',
'bit_score' => '140',
'alignment_length' => '484',
'identity_percentage' => '25.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g04720' => array(
'gene_id' => 'RCC4223.02g04720',
'e_value' => '9e-33',
'bit_score' => '137',
'alignment_length' => '454',
'identity_percentage' => '27.09',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00027G01590' => array(
'gene_id' => 'ATR_00027G01590',
'e_value' => '9e-32',
'bit_score' => '127',
'alignment_length' => '189',
'identity_percentage' => '37.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.10g01020' => array(
'gene_id' => 'RCC4223.10g01020',
'e_value' => '3e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G46760' => array(
'gene_id' => 'PI00G46760',
'e_value' => '4e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PI00G20770' => array(
'gene_id' => 'PI00G20770',
'e_value' => '4e-31',
'bit_score' => '132',
'alignment_length' => '455',
'identity_percentage' => '25.93',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CV00G20950' => array(
'gene_id' => 'CV00G20950',
'e_value' => '5e-31',
'bit_score' => '132',
'alignment_length' => '453',
'identity_percentage' => '26.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'VC00G96420' => array(
'gene_id' => 'VC00G96420',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '541',
'identity_percentage' => '26.43',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G00990' => array(
'gene_id' => 'ATR_00007G00990',
'e_value' => '5e-30',
'bit_score' => '120',
'alignment_length' => '143',
'identity_percentage' => '41.26',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AC00G29940' => array(
'gene_id' => 'AC00G29940',
'e_value' => '1e-29',
'bit_score' => '128',
'alignment_length' => '507',
'identity_percentage' => '25.05',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07320' => array(
'gene_id' => 'AP00G07320',
'e_value' => '1e-28',
'bit_score' => '125',
'alignment_length' => '484',
'identity_percentage' => '25.83',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'OS06G13830' => array(
'gene_id' => 'OS06G13830',
'e_value' => '3e-28',
'bit_score' => '120',
'alignment_length' => '374',
'identity_percentage' => '30.48',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AC00G21030' => array(
'gene_id' => 'AC00G21030',
'e_value' => '2e-27',
'bit_score' => '121',
'alignment_length' => '527',
'identity_percentage' => '25.81',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_012G02740' => array(
'gene_id' => 'CNC64A_012G02740',
'e_value' => '2e-27',
'bit_score' => '120',
'alignment_length' => '442',
'identity_percentage' => '24.66',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G12380' => array(
'gene_id' => 'HE0000G12380',
'e_value' => '2e-25',
'bit_score' => '113',
'alignment_length' => '388',
'identity_percentage' => '26.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'AC00G21740' => array(
'gene_id' => 'AC00G21740',
'e_value' => '1e-24',
'bit_score' => '113',
'alignment_length' => '518',
'identity_percentage' => '24.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AC00G61180' => array(
'gene_id' => 'AC00G61180',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '474',
'identity_percentage' => '25.74',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G20930' => array(
'gene_id' => 'CV00G20930',
'e_value' => '4e-24',
'bit_score' => '105',
'alignment_length' => '203',
'identity_percentage' => '31.03',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G00970' => array(
'gene_id' => 'ATR_00007G00970',
'e_value' => '5e-21',
'bit_score' => '94.4',
'alignment_length' => '120',
'identity_percentage' => '37.50',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AP00G56700' => array(
'gene_id' => 'AP00G56700',
'e_value' => '3e-17',
'bit_score' => '89.4',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00224G00060' => array(
'gene_id' => 'ATR_00224G00060',
'e_value' => '1e-16',
'bit_score' => '81.6',
'alignment_length' => '121',
'identity_percentage' => '42.98',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100897g4' => array(
'gene_id' => 'Naga_100897g4',
'e_value' => '3e-14',
'bit_score' => '79.0',
'alignment_length' => '210',
'identity_percentage' => '27.14',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00224G00070' => array(
'gene_id' => 'ATR_00224G00070',
'e_value' => '1e-13',
'bit_score' => '75.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01000' => array(
'gene_id' => 'ATR_00007G01000',
'e_value' => '9e-12',
'bit_score' => '68.9',
'alignment_length' => '185',
'identity_percentage' => '27.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01020' => array(
'gene_id' => 'ATR_00007G01020',
'e_value' => '2e-10',
'bit_score' => '63.5',
'alignment_length' => '118',
'identity_percentage' => '31.36',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00560' => array(
'gene_id' => 'ATR_00077G00560',
'e_value' => '1e-09',
'bit_score' => '63.5',
'alignment_length' => '162',
'identity_percentage' => '25.93',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01040' => array(
'gene_id' => 'ATR_00007G01040',
'e_value' => '2e-09',
'bit_score' => '60.5',
'alignment_length' => '107',
'identity_percentage' => '34.58',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G00960' => array(
'gene_id' => 'ATR_00007G00960',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '112',
'identity_percentage' => '33.04',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_025G01110' => array(
'gene_id' => 'CNC64A_025G01110',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '80',
'identity_percentage' => '41.25',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'OS12G24040' => array(
'gene_id' => 'OS12G24040',
'e_value' => '4e-09',
'bit_score' => '63.5',
'alignment_length' => '187',
'identity_percentage' => '29.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'CV00G83570' => array(
'gene_id' => 'CV00G83570',
'e_value' => '6e-08',
'bit_score' => '59.3',
'alignment_length' => '349',
'identity_percentage' => '22.35',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00027G01560' => array(
'gene_id' => 'ATR_00027G01560',
'e_value' => '8e-08',
'bit_score' => '55.5',
'alignment_length' => '106',
'identity_percentage' => '31.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_708G00010' => array(
'gene_id' => 'CNC64A_708G00010',
'e_value' => '3e-07',
'bit_score' => '52.8',
'alignment_length' => '43',
'identity_percentage' => '53.49',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'ddi' => array(
(int) 0 => 'DDB_G0286321',
(int) 1 => 'DDB_G0286277',
(int) 2 => 'DDB_G0284239',
(int) 3 => 'DDB_G0271134',
(int) 4 => 'DDB_G0271314',
(int) 5 => 'DDB_G0284295',
(int) 6 => 'DDB_G0283077',
(int) 7 => 'DDB_G0279995'
),
'acg' => array(
(int) 0 => 'AC00G88310',
(int) 1 => 'AC00G37000',
(int) 2 => 'AC00G15120',
(int) 3 => 'AC00G54710',
(int) 4 => 'AC00G30000',
(int) 5 => 'AC00G29940',
(int) 6 => 'AC00G21030',
(int) 7 => 'AC00G21740',
(int) 8 => 'AC00G61180'
),
'ath' => array(
(int) 0 => 'AT2G32990',
(int) 1 => 'AT1G19940',
(int) 2 => 'AT4G11050',
(int) 3 => 'AT1G75680',
(int) 4 => 'AT1G64390',
(int) 5 => 'AT2G44550',
(int) 6 => 'AT2G44560',
(int) 7 => 'AT2G44570',
(int) 8 => 'AT2G44540',
(int) 9 => 'AT1G70710',
(int) 10 => 'AT4G02290',
(int) 11 => 'AT1G02800',
(int) 12 => 'AT4G09740',
(int) 13 => 'AT4G23560',
(int) 14 => 'AT1G48930',
(int) 15 => 'AT3G43860',
(int) 16 => 'AT1G23210',
(int) 17 => 'AT1G71380',
(int) 18 => 'AT1G22880',
(int) 19 => 'AT4G39010',
(int) 20 => 'AT4G24260',
(int) 21 => 'AT5G49720',
(int) 22 => 'AT4G39000',
(int) 23 => 'AT1G65610',
(int) 24 => 'AT4G38990'
),
'ppa' => array(
(int) 0 => 'PP00037G01710',
(int) 1 => 'PP00149G00070',
(int) 2 => 'PP00100G00830',
(int) 3 => 'PP00100G00730',
(int) 4 => 'PP00053G00510',
(int) 5 => 'PP00170G00040',
(int) 6 => 'PP00176G00580',
(int) 7 => 'PP00308G00070',
(int) 8 => 'PP00087G00860',
(int) 9 => 'PP00080G00260',
(int) 10 => 'PP00376G00130',
(int) 11 => 'PP00060G00520',
(int) 12 => 'PP00157G00210',
(int) 13 => 'PP00190G00010',
(int) 14 => 'PP00035G01830',
(int) 15 => 'PP00019G00560',
(int) 16 => 'PP00015G02420',
(int) 17 => 'PP00100G00740',
(int) 18 => 'PP00064G00580',
(int) 19 => 'PP00020G01840'
),
'atr' => array(
(int) 0 => 'ATR_00159G00100',
(int) 1 => 'ATR_00112G00110',
(int) 2 => 'ATR_00112G00090',
(int) 3 => 'ATR_00099G00510',
(int) 4 => 'ATR_00053G00430',
(int) 5 => 'ATR_00099G00500',
(int) 6 => 'ATR_00010G01270',
(int) 7 => 'ATR_00024G02540',
(int) 8 => 'ATR_00027G01540',
(int) 9 => 'ATR_00029G00790',
(int) 10 => 'ATR_00018G01670',
(int) 11 => 'ATR_00071G00350',
(int) 12 => 'ATR_00071G00690',
(int) 13 => 'ATR_00003G00840',
(int) 14 => 'ATR_00007G01080',
(int) 15 => 'ATR_00066G01210',
(int) 16 => 'ATR_00007G01050',
(int) 17 => 'ATR_00027G01590',
(int) 18 => 'ATR_00007G00990',
(int) 19 => 'ATR_00007G00970',
(int) 20 => 'ATR_00224G00060',
(int) 21 => 'ATR_00224G00070',
(int) 22 => 'ATR_00007G01000',
(int) 23 => 'ATR_00007G01020',
(int) 24 => 'ATR_00077G00560',
(int) 25 => 'ATR_00007G01040',
(int) 26 => 'ATR_00007G00960',
(int) 27 => 'ATR_00027G01560'
),
'cvu' => array(
(int) 0 => 'CV00G18710',
(int) 1 => 'CV00G58180',
(int) 2 => 'CV00G13860',
(int) 3 => 'CV00G28250',
(int) 4 => 'CV00G01670',
(int) 5 => 'CV00G83580',
(int) 6 => 'CV00G20950',
(int) 7 => 'CV00G20930',
(int) 8 => 'CV00G83570'
),
'osa' => array(
(int) 0 => 'OS09G36350',
(int) 1 => 'OS02G50490',
(int) 2 => 'OS08G32940',
(int) 3 => 'OS01G12070',
(int) 4 => 'OS01G21070',
(int) 5 => 'OS04G57860',
(int) 6 => 'OS06G50140',
(int) 7 => 'OS05G12150',
(int) 8 => 'OS01G12030',
(int) 9 => 'OS09G23084',
(int) 10 => 'OS02G50040',
(int) 11 => 'OS02G03120',
(int) 12 => 'OS02G05744',
(int) 13 => 'OS08G29770',
(int) 14 => 'OS06G14540',
(int) 15 => 'OS09G36060',
(int) 16 => 'OS04G41970',
(int) 17 => 'OS08G02220',
(int) 18 => 'OS04G36610',
(int) 19 => 'OS02G53820',
(int) 20 => 'OS05G03840',
(int) 21 => 'OS03G52630',
(int) 22 => 'OS03G21210',
(int) 23 => 'OS06G13830',
(int) 24 => 'OS12G24040'
),
'hsp' => array(
(int) 0 => 'HE0000G29710',
(int) 1 => 'HE0000G53560',
(int) 2 => 'HE0000G12380'
),
'nga' => array(
(int) 0 => 'Naga_100014g5',
(int) 1 => 'Naga_100360g3',
(int) 2 => 'Naga_100054g30',
(int) 3 => 'Naga_100747g2',
(int) 4 => 'Naga_100897g4'
),
'apr' => array(
(int) 0 => 'AP00G14380',
(int) 1 => 'AP00G47660',
(int) 2 => 'AP00G47670',
(int) 3 => 'AP00G47650',
(int) 4 => 'AP00G63720',
(int) 5 => 'AP00G07320',
(int) 6 => 'AP00G56700'
),
'pse3' => array(
(int) 0 => 'PI00G51860',
(int) 1 => 'PI00G21600',
(int) 2 => 'PI00G46760',
(int) 3 => 'PI00G20770'
),
'vca' => array(
(int) 0 => 'VC00G86050',
(int) 1 => 'VC00G86060',
(int) 2 => 'VC00G96420'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.08g01580',
(int) 1 => 'RCC4223.02g11150',
(int) 2 => 'RCC4223.02g04720',
(int) 3 => 'RCC4223.10g01020'
),
'cre' => array(
(int) 0 => 'CR17G07600',
(int) 1 => 'CR17G07580',
(int) 2 => 'CR06G04900'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G00250',
(int) 1 => 'CNC64A_010G00230',
(int) 2 => 'CNC64A_004G00230',
(int) 3 => 'CNC64A_012G02740',
(int) 4 => 'CNC64A_025G01110'
)
),
'gene_id' => 'DDB_G0286321',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'DDB_G0286321',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'OL07G03630',
'gf_placeholder' => 'HOM03P003032',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'DDB_G0286321' => array(
'gene_id' => 'DDB_G0286321',
'e_value' => '0.0',
'bit_score' => '1139',
'alignment_length' => '558',
'identity_percentage' => '100.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0286277' => array(
'gene_id' => 'DDB_G0286277',
'e_value' => '0.0',
'bit_score' => '568',
'alignment_length' => '437',
'identity_percentage' => '65.22',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0284239' => array(
'gene_id' => 'DDB_G0284239',
'e_value' => '2e-162',
'bit_score' => '486',
'alignment_length' => '441',
'identity_percentage' => '56.24',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0271134' => array(
'gene_id' => 'DDB_G0271134',
'e_value' => '2e-155',
'bit_score' => '468',
'alignment_length' => '465',
'identity_percentage' => '52.69',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0271314' => array(
'gene_id' => 'DDB_G0271314',
'e_value' => '3e-154',
'bit_score' => '457',
'alignment_length' => '459',
'identity_percentage' => '52.29',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0284295' => array(
'gene_id' => 'DDB_G0284295',
'e_value' => '1e-138',
'bit_score' => '417',
'alignment_length' => '431',
'identity_percentage' => '51.28',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AC00G88310' => array(
'gene_id' => 'AC00G88310',
'e_value' => '1e-81',
'bit_score' => '269',
'alignment_length' => '453',
'identity_percentage' => '36.20',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT2G32990' => array(
'gene_id' => 'AT2G32990',
'e_value' => '7e-81',
'bit_score' => '269',
'alignment_length' => '468',
'identity_percentage' => '36.97',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00037G01710' => array(
'gene_id' => 'PP00037G01710',
'e_value' => '2e-80',
'bit_score' => '271',
'alignment_length' => '567',
'identity_percentage' => '33.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00149G00070' => array(
'gene_id' => 'PP00149G00070',
'e_value' => '3e-77',
'bit_score' => '262',
'alignment_length' => '497',
'identity_percentage' => '35.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G19940' => array(
'gene_id' => 'AT1G19940',
'e_value' => '9e-77',
'bit_score' => '258',
'alignment_length' => '468',
'identity_percentage' => '37.18',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'ATR_00159G00100' => array(
'gene_id' => 'ATR_00159G00100',
'e_value' => '1e-76',
'bit_score' => '260',
'alignment_length' => '497',
'identity_percentage' => '33.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'CV00G18710' => array(
'gene_id' => 'CV00G18710',
'e_value' => '3e-76',
'bit_score' => '255',
'alignment_length' => '450',
'identity_percentage' => '34.00',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT4G11050' => array(
'gene_id' => 'AT4G11050',
'e_value' => '8e-75',
'bit_score' => '256',
'alignment_length' => '476',
'identity_percentage' => '35.50',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AC00G37000' => array(
'gene_id' => 'AC00G37000',
'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '444',
'identity_percentage' => '34.68',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P106625'
)
),
'OS09G36350' => array(
'gene_id' => 'OS09G36350',
'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '483',
'identity_percentage' => '35.82',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'ATR_00112G00110' => array(
'gene_id' => 'ATR_00112G00110',
'e_value' => '4e-74',
'bit_score' => '251',
'alignment_length' => '494',
'identity_percentage' => '35.63',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G75680' => array(
'gene_id' => 'AT1G75680',
'e_value' => '1e-73',
'bit_score' => '250',
'alignment_length' => '450',
'identity_percentage' => '37.78',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'AT1G64390' => array(
'gene_id' => 'AT1G64390',
'e_value' => '1e-73',
'bit_score' => '252',
'alignment_length' => '471',
'identity_percentage' => '35.03',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT2G44550' => array(
'gene_id' => 'AT2G44550',
'e_value' => '2e-73',
'bit_score' => '249',
'alignment_length' => '463',
'identity_percentage' => '35.85',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS02G50490' => array(
'gene_id' => 'OS02G50490',
'e_value' => '2e-73',
'bit_score' => '250',
'alignment_length' => '479',
'identity_percentage' => '35.28',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT2G44560' => array(
'gene_id' => 'AT2G44560',
'e_value' => '3e-73',
'bit_score' => '248',
'alignment_length' => '465',
'identity_percentage' => '35.91',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'HE0000G29710' => array(
'gene_id' => 'HE0000G29710',
'e_value' => '3e-73',
'bit_score' => '247',
'alignment_length' => '453',
'identity_percentage' => '35.98',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT2G44570' => array(
'gene_id' => 'AT2G44570',
'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '496',
'identity_percentage' => '32.86',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT2G44540' => array(
'gene_id' => 'AT2G44540',
'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '488',
'identity_percentage' => '34.63',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS08G32940' => array(
'gene_id' => 'OS08G32940',
'e_value' => '5e-72',
'bit_score' => '246',
'alignment_length' => '473',
'identity_percentage' => '34.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'OS01G12070' => array(
'gene_id' => 'OS01G12070',
'e_value' => '1e-71',
'bit_score' => '248',
'alignment_length' => '472',
'identity_percentage' => '34.32',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'OS01G21070' => array(
'gene_id' => 'OS01G21070',
'e_value' => '1e-71',
'bit_score' => '244',
'alignment_length' => '465',
'identity_percentage' => '35.05',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'Naga_100014g5' => array(
'gene_id' => 'Naga_100014g5',
'e_value' => '3e-71',
'bit_score' => '242',
'alignment_length' => '437',
'identity_percentage' => '37.07',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS04G57860' => array(
'gene_id' => 'OS04G57860',
'e_value' => '3e-71',
'bit_score' => '246',
'alignment_length' => '480',
'identity_percentage' => '33.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'ATR_00112G00090' => array(
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'e_value' => '5e-71',
'bit_score' => '242',
'alignment_length' => '495',
'identity_percentage' => '35.15',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00100G00830' => array(
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'e_value' => '7e-71',
'bit_score' => '242',
'alignment_length' => '496',
'identity_percentage' => '33.47',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'OS06G50140' => array(
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'e_value' => '2e-70',
'bit_score' => '241',
'alignment_length' => '474',
'identity_percentage' => '34.60',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'AT1G70710' => array(
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'alignment_length' => '470',
'identity_percentage' => '34.47',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AT4G02290' => array(
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'e_value' => '3e-70',
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'alignment_length' => '471',
'identity_percentage' => '35.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00099G00510' => array(
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'e_value' => '5e-70',
'bit_score' => '239',
'alignment_length' => '495',
'identity_percentage' => '33.54',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'Naga_100360g3' => array(
'gene_id' => 'Naga_100360g3',
'e_value' => '6e-70',
'bit_score' => '239',
'alignment_length' => '426',
'identity_percentage' => '33.80',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS05G12150' => array(
'gene_id' => 'OS05G12150',
'e_value' => '8e-70',
'bit_score' => '242',
'alignment_length' => '534',
'identity_percentage' => '30.71',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'OS01G12030' => array(
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'e_value' => '3e-69',
'bit_score' => '241',
'alignment_length' => '473',
'identity_percentage' => '34.04',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'ATR_00053G00430' => array(
'gene_id' => 'ATR_00053G00430',
'e_value' => '6e-69',
'bit_score' => '237',
'alignment_length' => '471',
'identity_percentage' => '33.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'AT1G02800' => array(
'gene_id' => 'AT1G02800',
'e_value' => '7e-69',
'bit_score' => '237',
'alignment_length' => '462',
'identity_percentage' => '36.15',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS09G23084' => array(
'gene_id' => 'OS09G23084',
'e_value' => '1e-68',
'bit_score' => '237',
'alignment_length' => '479',
'identity_percentage' => '34.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'ATR_00099G00500' => array(
'gene_id' => 'ATR_00099G00500',
'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '490',
'identity_percentage' => '35.92',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00010G01270' => array(
'gene_id' => 'ATR_00010G01270',
'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '478',
'identity_percentage' => '32.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00024G02540' => array(
'gene_id' => 'ATR_00024G02540',
'e_value' => '3e-68',
'bit_score' => '234',
'alignment_length' => '464',
'identity_percentage' => '35.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P040311'
)
),
'Naga_100054g30' => array(
'gene_id' => 'Naga_100054g30',
'e_value' => '6e-68',
'bit_score' => '234',
'alignment_length' => '427',
'identity_percentage' => '34.89',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT4G09740' => array(
'gene_id' => 'AT4G09740',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'AT4G23560' => array(
'gene_id' => 'AT4G23560',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.41',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'PP00100G00730' => array(
'gene_id' => 'PP00100G00730',
'e_value' => '3e-67',
'bit_score' => '233',
'alignment_length' => '499',
'identity_percentage' => '33.87',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00053G00510' => array(
'gene_id' => 'PP00053G00510',
'e_value' => '1e-66',
'bit_score' => '234',
'alignment_length' => '510',
'identity_percentage' => '33.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00170G00040' => array(
'gene_id' => 'PP00170G00040',
'e_value' => '2e-66',
'bit_score' => '230',
'alignment_length' => '468',
'identity_percentage' => '33.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'PP00176G00580' => array(
'gene_id' => 'PP00176G00580',
'e_value' => '3e-66',
'bit_score' => '233',
'alignment_length' => '516',
'identity_percentage' => '33.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G48930' => array(
'gene_id' => 'AT1G48930',
'e_value' => '4e-66',
'bit_score' => '232',
'alignment_length' => '473',
'identity_percentage' => '36.36',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT3G43860' => array(
'gene_id' => 'AT3G43860',
'e_value' => '1e-65',
'bit_score' => '228',
'alignment_length' => '488',
'identity_percentage' => '33.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P040311'
)
),
'OS02G50040' => array(
'gene_id' => 'OS02G50040',
'e_value' => '2e-65',
'bit_score' => '228',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'DDB_G0283077' => array(
'gene_id' => 'DDB_G0283077',
'e_value' => '2e-65',
'bit_score' => '230',
'alignment_length' => '465',
'identity_percentage' => '34.19',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P052440'
)
),
'ATR_00027G01540' => array(
'gene_id' => 'ATR_00027G01540',
'e_value' => '2e-65',
'bit_score' => '227',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AT1G23210' => array(
'gene_id' => 'AT1G23210',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '492',
'identity_percentage' => '31.30',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS02G03120' => array(
'gene_id' => 'OS02G03120',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '504',
'identity_percentage' => '31.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AP00G14380' => array(
'gene_id' => 'AP00G14380',
'e_value' => '4e-65',
'bit_score' => '230',
'alignment_length' => '444',
'identity_percentage' => '35.14',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS02G05744' => array(
'gene_id' => 'OS02G05744',
'e_value' => '2e-64',
'bit_score' => '226',
'alignment_length' => '481',
'identity_percentage' => '32.64',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00308G00070' => array(
'gene_id' => 'PP00308G00070',
'e_value' => '2e-64',
'bit_score' => '225',
'alignment_length' => '485',
'identity_percentage' => '33.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'PP00087G00860' => array(
'gene_id' => 'PP00087G00860',
'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '470',
'identity_percentage' => '34.26',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'PP00080G00260' => array(
'gene_id' => 'PP00080G00260',
'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '466',
'identity_percentage' => '34.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00376G00130' => array(
'gene_id' => 'PP00376G00130',
'e_value' => '3e-64',
'bit_score' => '224',
'alignment_length' => '467',
'identity_percentage' => '33.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS08G29770' => array(
'gene_id' => 'OS08G29770',
'e_value' => '4e-64',
'bit_score' => '224',
'alignment_length' => '454',
'identity_percentage' => '33.92',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'OS06G14540' => array(
'gene_id' => 'OS06G14540',
'e_value' => '1e-63',
'bit_score' => '223',
'alignment_length' => '481',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00060G00520' => array(
'gene_id' => 'PP00060G00520',
'e_value' => '6e-63',
'bit_score' => '222',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'ATR_00029G00790' => array(
'gene_id' => 'ATR_00029G00790',
'e_value' => '1e-62',
'bit_score' => '223',
'alignment_length' => '467',
'identity_percentage' => '34.90',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G71380' => array(
'gene_id' => 'AT1G71380',
'e_value' => '2e-62',
'bit_score' => '219',
'alignment_length' => '491',
'identity_percentage' => '34.01',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS09G36060' => array(
'gene_id' => 'OS09G36060',
'e_value' => '8e-62',
'bit_score' => '218',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00157G00210' => array(
'gene_id' => 'PP00157G00210',
'e_value' => '1e-61',
'bit_score' => '219',
'alignment_length' => '486',
'identity_percentage' => '34.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT1G22880' => array(
'gene_id' => 'AT1G22880',
'e_value' => '2e-61',
'bit_score' => '216',
'alignment_length' => '496',
'identity_percentage' => '34.48',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00018G01670' => array(
'gene_id' => 'ATR_00018G01670',
'e_value' => '6e-61',
'bit_score' => '215',
'alignment_length' => '426',
'identity_percentage' => '34.27',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AT4G39010' => array(
'gene_id' => 'AT4G39010',
'e_value' => '7e-61',
'bit_score' => '215',
'alignment_length' => '474',
'identity_percentage' => '32.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS04G41970' => array(
'gene_id' => 'OS04G41970',
'e_value' => '1e-60',
'bit_score' => '217',
'alignment_length' => '486',
'identity_percentage' => '34.77',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'OS08G02220' => array(
'gene_id' => 'OS08G02220',
'e_value' => '3e-60',
'bit_score' => '214',
'alignment_length' => '480',
'identity_percentage' => '30.63',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'DDB_G0279995' => array(
'gene_id' => 'DDB_G0279995',
'e_value' => '3e-60',
'bit_score' => '219',
'alignment_length' => '472',
'identity_percentage' => '33.26',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P052440'
)
),
'PI00G51860' => array(
'gene_id' => 'PI00G51860',
'e_value' => '9e-60',
'bit_score' => '213',
'alignment_length' => '452',
'identity_percentage' => '32.96',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00190G00010' => array(
'gene_id' => 'PP00190G00010',
'e_value' => '9e-60',
'bit_score' => '214',
'alignment_length' => '489',
'identity_percentage' => '34.97',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'Naga_100747g2' => array(
'gene_id' => 'Naga_100747g2',
'e_value' => '1e-59',
'bit_score' => '212',
'alignment_length' => '451',
'identity_percentage' => '33.92',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00035G01830' => array(
'gene_id' => 'PP00035G01830',
'e_value' => '3e-59',
'bit_score' => '213',
'alignment_length' => '487',
'identity_percentage' => '34.70',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'PP00019G00560' => array(
'gene_id' => 'PP00019G00560',
'e_value' => '8e-59',
'bit_score' => '209',
'alignment_length' => '469',
'identity_percentage' => '33.48',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS04G36610' => array(
'gene_id' => 'OS04G36610',
'e_value' => '5e-58',
'bit_score' => '207',
'alignment_length' => '468',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'CV00G58180' => array(
'gene_id' => 'CV00G58180',
'e_value' => '7e-58',
'bit_score' => '210',
'alignment_length' => '489',
'identity_percentage' => '30.47',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P042766'
)
),
'OS02G53820' => array(
'gene_id' => 'OS02G53820',
'e_value' => '3e-56',
'bit_score' => '202',
'alignment_length' => '462',
'identity_percentage' => '30.52',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P040311'
)
),
'AT4G24260' => array(
'gene_id' => 'AT4G24260',
'e_value' => '6e-56',
'bit_score' => '204',
'alignment_length' => '495',
'identity_percentage' => '32.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT5G49720' => array(
'gene_id' => 'AT5G49720',
'e_value' => '1e-55',
'bit_score' => '203',
'alignment_length' => '490',
'identity_percentage' => '34.29',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'PP00015G02420' => array(
'gene_id' => 'PP00015G02420',
'e_value' => '2e-55',
'bit_score' => '202',
'alignment_length' => '473',
'identity_percentage' => '32.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT4G39000' => array(
'gene_id' => 'AT4G39000',
'e_value' => '3e-55',
'bit_score' => '199',
'alignment_length' => '510',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS05G03840' => array(
'gene_id' => 'OS05G03840',
'e_value' => '5e-55',
'bit_score' => '199',
'alignment_length' => '519',
'identity_percentage' => '28.90',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P100669'
)
),
'OS03G52630' => array(
'gene_id' => 'OS03G52630',
'e_value' => '8e-55',
'bit_score' => '201',
'alignment_length' => '519',
'identity_percentage' => '32.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'HE0000G53560' => array(
'gene_id' => 'HE0000G53560',
'e_value' => '5e-54',
'bit_score' => '195',
'alignment_length' => '445',
'identity_percentage' => '30.11',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS03G21210' => array(
'gene_id' => 'OS03G21210',
'e_value' => '2e-52',
'bit_score' => '194',
'alignment_length' => '482',
'identity_percentage' => '32.16',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'ATR_00071G00350' => array(
'gene_id' => 'ATR_00071G00350',
'e_value' => '1e-50',
'bit_score' => '189',
'alignment_length' => '500',
'identity_percentage' => '33.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'VC00G86050' => array(
'gene_id' => 'VC00G86050',
'e_value' => '2e-50',
'bit_score' => '189',
'alignment_length' => '518',
'identity_percentage' => '30.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AC00G15120' => array(
'gene_id' => 'AC00G15120',
'e_value' => '4e-50',
'bit_score' => '191',
'alignment_length' => '476',
'identity_percentage' => '30.88',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'RCC4223.08g01580' => array(
'gene_id' => 'RCC4223.08g01580',
'e_value' => '7e-50',
'bit_score' => '185',
'alignment_length' => '469',
'identity_percentage' => '30.92',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00100G00740' => array(
'gene_id' => 'PP00100G00740',
'e_value' => '1e-49',
'bit_score' => '185',
'alignment_length' => '517',
'identity_percentage' => '29.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'VC00G86060' => array(
'gene_id' => 'VC00G86060',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '518',
'identity_percentage' => '31.08',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00064G00580' => array(
'gene_id' => 'PP00064G00580',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '490',
'identity_percentage' => '32.86',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT1G65610' => array(
'gene_id' => 'AT1G65610',
'e_value' => '2e-49',
'bit_score' => '185',
'alignment_length' => '491',
'identity_percentage' => '31.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AP00G47660' => array(
'gene_id' => 'AP00G47660',
'e_value' => '2e-48',
'bit_score' => '181',
'alignment_length' => '449',
'identity_percentage' => '30.29',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'ATR_00071G00690' => array(
'gene_id' => 'ATR_00071G00690',
'e_value' => '2e-48',
'bit_score' => '182',
'alignment_length' => '503',
'identity_percentage' => '31.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P133971'
)
),
'CR17G07600' => array(
'gene_id' => 'CR17G07600',
'e_value' => '1e-47',
'bit_score' => '181',
'alignment_length' => '500',
'identity_percentage' => '30.60',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'CNC64A_004G00250' => array(
'gene_id' => 'CNC64A_004G00250',
'e_value' => '6e-45',
'bit_score' => '172',
'alignment_length' => '448',
'identity_percentage' => '29.24',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AC00G54710' => array(
'gene_id' => 'AC00G54710',
'e_value' => '2e-44',
'bit_score' => '174',
'alignment_length' => '466',
'identity_percentage' => '30.47',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'CNC64A_010G00230' => array(
'gene_id' => 'CNC64A_010G00230',
'e_value' => '1e-43',
'bit_score' => '168',
'alignment_length' => '456',
'identity_percentage' => '26.97',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'CR17G07580' => array(
'gene_id' => 'CR17G07580',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '504',
'identity_percentage' => '30.75',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'CNC64A_004G00230' => array(
'gene_id' => 'CNC64A_004G00230',
'e_value' => '3e-43',
'bit_score' => '165',
'alignment_length' => '475',
'identity_percentage' => '27.58',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AP00G47670' => array(
'gene_id' => 'AP00G47670',
'e_value' => '4e-40',
'bit_score' => '154',
'alignment_length' => '380',
'identity_percentage' => '29.21',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P200697'
)
),
'CV00G13860' => array(
'gene_id' => 'CV00G13860',
'e_value' => '4e-40',
'bit_score' => '161',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'CV00G28250' => array(
'gene_id' => 'CV00G28250',
'e_value' => '2e-39',
'bit_score' => '159',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'ATR_00003G00840' => array(
'gene_id' => 'ATR_00003G00840',
'e_value' => '3e-39',
'bit_score' => '152',
'alignment_length' => '341',
'identity_percentage' => '34.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P200670'
)
),
'AP00G47650' => array(
'gene_id' => 'AP00G47650',
'e_value' => '7e-39',
'bit_score' => '152',
'alignment_length' => '400',
'identity_percentage' => '29.75',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT4G38990' => array(
'gene_id' => 'AT4G38990',
'e_value' => '1e-38',
'bit_score' => '149',
'alignment_length' => '342',
'identity_percentage' => '32.46',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P206306'
)
),
'ATR_00007G01080' => array(
'gene_id' => 'ATR_00007G01080',
'e_value' => '6e-38',
'bit_score' => '143',
'alignment_length' => '184',
'identity_percentage' => '40.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P047991'
)
),
'AC00G30000' => array(
'gene_id' => 'AC00G30000',
'e_value' => '4e-37',
'bit_score' => '152',
'alignment_length' => '458',
'identity_percentage' => '30.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P182568'
)
),
'CR06G04900' => array(
'gene_id' => 'CR06G04900',
'e_value' => '4e-37',
'bit_score' => '151',
'alignment_length' => '487',
'identity_percentage' => '27.10',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'ATR_00066G01210' => array(
'gene_id' => 'ATR_00066G01210',
'e_value' => '1e-35',
'bit_score' => '145',
'alignment_length' => '250',
'identity_percentage' => '37.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'PI00G21600' => array(
'gene_id' => 'PI00G21600',
'e_value' => '2e-35',
'bit_score' => '145',
'alignment_length' => '465',
'identity_percentage' => '30.75',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P063424'
)
),
'RCC4223.02g11150' => array(
'gene_id' => 'RCC4223.02g11150',
'e_value' => '2e-35',
'bit_score' => '144',
'alignment_length' => '465',
'identity_percentage' => '29.03',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P063424'
)
),
'AP00G63720' => array(
'gene_id' => 'AP00G63720',
'e_value' => '5e-35',
'bit_score' => '145',
'alignment_length' => '452',
'identity_percentage' => '26.77',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000018',
'ORTHOFAM' => 'ORTHO03P006066'
)
),
'PP00020G01840' => array(
'gene_id' => 'PP00020G01840',
'e_value' => '5e-35',
'bit_score' => '139',
'alignment_length' => '391',
'identity_percentage' => '28.90',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00007G01050' => array(
'gene_id' => 'ATR_00007G01050',
'e_value' => '8e-35',
'bit_score' => '135',
'alignment_length' => '188',
'identity_percentage' => '42.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P047991'
)
),
'CV00G01670' => array(
'gene_id' => 'CV00G01670',
'e_value' => '5e-34',
'bit_score' => '142',
'alignment_length' => '483',
'identity_percentage' => '26.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'CV00G83580' => array(
'gene_id' => 'CV00G83580',
'e_value' => '1e-33',
'bit_score' => '140',
'alignment_length' => '484',
'identity_percentage' => '25.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'RCC4223.02g04720' => array(
'gene_id' => 'RCC4223.02g04720',
'e_value' => '9e-33',
'bit_score' => '137',
'alignment_length' => '454',
'identity_percentage' => '27.09',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P076357'
)
),
'ATR_00027G01590' => array(
'gene_id' => 'ATR_00027G01590',
'e_value' => '9e-32',
'bit_score' => '127',
'alignment_length' => '189',
'identity_percentage' => '37.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P141509'
)
),
'RCC4223.10g01020' => array(
'gene_id' => 'RCC4223.10g01020',
'e_value' => '3e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'PI00G46760' => array(
'gene_id' => 'PI00G46760',
'e_value' => '4e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'PI00G20770' => array(
'gene_id' => 'PI00G20770',
'e_value' => '4e-31',
'bit_score' => '132',
'alignment_length' => '455',
'identity_percentage' => '25.93',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P076357'
)
),
'CV00G20950' => array(
'gene_id' => 'CV00G20950',
'e_value' => '5e-31',
'bit_score' => '132',
'alignment_length' => '453',
'identity_percentage' => '26.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P019270'
)
),
'VC00G96420' => array(
'gene_id' => 'VC00G96420',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '541',
'identity_percentage' => '26.43',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P181073'
)
),
'ATR_00007G00990' => array(
'gene_id' => 'ATR_00007G00990',
'e_value' => '5e-30',
'bit_score' => '120',
'alignment_length' => '143',
'identity_percentage' => '41.26',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P188248'
)
),
'AC00G29940' => array(
'gene_id' => 'AC00G29940',
'e_value' => '1e-29',
'bit_score' => '128',
'alignment_length' => '507',
'identity_percentage' => '25.05',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'AP00G07320' => array(
'gene_id' => 'AP00G07320',
'e_value' => '1e-28',
'bit_score' => '125',
'alignment_length' => '484',
'identity_percentage' => '25.83',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'OS06G13830' => array(
'gene_id' => 'OS06G13830',
'e_value' => '3e-28',
'bit_score' => '120',
'alignment_length' => '374',
'identity_percentage' => '30.48',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AC00G21030' => array(
'gene_id' => 'AC00G21030',
'e_value' => '2e-27',
'bit_score' => '121',
'alignment_length' => '527',
'identity_percentage' => '25.81',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P042766'
)
),
'CNC64A_012G02740' => array(
'gene_id' => 'CNC64A_012G02740',
'e_value' => '2e-27',
'bit_score' => '120',
'alignment_length' => '442',
'identity_percentage' => '24.66',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'HE0000G12380' => array(
'gene_id' => 'HE0000G12380',
'e_value' => '2e-25',
'bit_score' => '113',
'alignment_length' => '388',
'identity_percentage' => '26.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P065746'
)
),
'AC00G21740' => array(
'gene_id' => 'AC00G21740',
'e_value' => '1e-24',
'bit_score' => '113',
'alignment_length' => '518',
'identity_percentage' => '24.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'AC00G61180' => array(
'gene_id' => 'AC00G61180',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '474',
'identity_percentage' => '25.74',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P065746'
)
),
'CV00G20930' => array(
'gene_id' => 'CV00G20930',
'e_value' => '4e-24',
'bit_score' => '105',
'alignment_length' => '203',
'identity_percentage' => '31.03',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P019270'
)
),
'ATR_00007G00970' => array(
'gene_id' => 'ATR_00007G00970',
'e_value' => '5e-21',
'bit_score' => '94.4',
'alignment_length' => '120',
'identity_percentage' => '37.50',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P210195'
)
),
'AP00G56700' => array(
'gene_id' => 'AP00G56700',
'e_value' => '3e-17',
'bit_score' => '89.4',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P042766'
)
),
'ATR_00224G00060' => array(
'gene_id' => 'ATR_00224G00060',
'e_value' => '1e-16',
'bit_score' => '81.6',
'alignment_length' => '121',
'identity_percentage' => '42.98',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P113839'
)
),
'Naga_100897g4' => array(
'gene_id' => 'Naga_100897g4',
'e_value' => '3e-14',
'bit_score' => '79.0',
'alignment_length' => '210',
'identity_percentage' => '27.14',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P154984'
)
),
'ATR_00224G00070' => array(
'gene_id' => 'ATR_00224G00070',
'e_value' => '1e-13',
'bit_score' => '75.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P126596'
)
),
'ATR_00007G01000' => array(
'gene_id' => 'ATR_00007G01000',
'e_value' => '9e-12',
'bit_score' => '68.9',
'alignment_length' => '185',
'identity_percentage' => '27.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P050363'
)
),
'ATR_00007G01020' => array(
'gene_id' => 'ATR_00007G01020',
'e_value' => '2e-10',
'bit_score' => '63.5',
'alignment_length' => '118',
'identity_percentage' => '31.36',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P147912'
)
),
'ATR_00077G00560' => array(
'gene_id' => 'ATR_00077G00560',
'e_value' => '1e-09',
'bit_score' => '63.5',
'alignment_length' => '162',
'identity_percentage' => '25.93',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P088277'
)
),
'ATR_00007G01040' => array(
'gene_id' => 'ATR_00007G01040',
'e_value' => '2e-09',
'bit_score' => '60.5',
'alignment_length' => '107',
'identity_percentage' => '34.58',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P033693'
)
),
'ATR_00007G00960' => array(
'gene_id' => 'ATR_00007G00960',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '112',
'identity_percentage' => '33.04',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P050363'
)
),
'CNC64A_025G01110' => array(
'gene_id' => 'CNC64A_025G01110',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '80',
'identity_percentage' => '41.25',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P208443'
)
),
'OS12G24040' => array(
'gene_id' => 'OS12G24040',
'e_value' => '4e-09',
'bit_score' => '63.5',
'alignment_length' => '187',
'identity_percentage' => '29.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P143142'
)
),
'CV00G83570' => array(
'gene_id' => 'CV00G83570',
'e_value' => '6e-08',
'bit_score' => '59.3',
'alignment_length' => '349',
'identity_percentage' => '22.35',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P024346',
'ORTHOFAM' => 'ORTHO03P160217'
)
),
'ATR_00027G01560' => array(
'gene_id' => 'ATR_00027G01560',
'e_value' => '8e-08',
'bit_score' => '55.5',
'alignment_length' => '106',
'identity_percentage' => '31.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P139801'
)
),
'CNC64A_708G00010' => array(
'gene_id' => 'CNC64A_708G00010',
'e_value' => '3e-07',
'bit_score' => '52.8',
'alignment_length' => '43',
'identity_percentage' => '53.49',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P073994'
)
)
)
$similarity_hits_species = array(
'ddi' => array(
(int) 0 => 'DDB_G0286321',
(int) 1 => 'DDB_G0286277',
(int) 2 => 'DDB_G0284239',
(int) 3 => 'DDB_G0271134',
(int) 4 => 'DDB_G0271314',
(int) 5 => 'DDB_G0284295',
(int) 6 => 'DDB_G0283077',
(int) 7 => 'DDB_G0279995'
),
'acg' => array(
(int) 0 => 'AC00G88310',
(int) 1 => 'AC00G37000',
(int) 2 => 'AC00G15120',
(int) 3 => 'AC00G54710',
(int) 4 => 'AC00G30000',
(int) 5 => 'AC00G29940',
(int) 6 => 'AC00G21030',
(int) 7 => 'AC00G21740',
(int) 8 => 'AC00G61180'
),
'ath' => array(
(int) 0 => 'AT2G32990',
(int) 1 => 'AT1G19940',
(int) 2 => 'AT4G11050',
(int) 3 => 'AT1G75680',
(int) 4 => 'AT1G64390',
(int) 5 => 'AT2G44550',
(int) 6 => 'AT2G44560',
(int) 7 => 'AT2G44570',
(int) 8 => 'AT2G44540',
(int) 9 => 'AT1G70710',
(int) 10 => 'AT4G02290',
(int) 11 => 'AT1G02800',
(int) 12 => 'AT4G09740',
(int) 13 => 'AT4G23560',
(int) 14 => 'AT1G48930',
(int) 15 => 'AT3G43860',
(int) 16 => 'AT1G23210',
(int) 17 => 'AT1G71380',
(int) 18 => 'AT1G22880',
(int) 19 => 'AT4G39010',
(int) 20 => 'AT4G24260',
(int) 21 => 'AT5G49720',
(int) 22 => 'AT4G39000',
(int) 23 => 'AT1G65610',
(int) 24 => 'AT4G38990'
),
'ppa' => array(
(int) 0 => 'PP00037G01710',
(int) 1 => 'PP00149G00070',
(int) 2 => 'PP00100G00830',
(int) 3 => 'PP00100G00730',
(int) 4 => 'PP00053G00510',
(int) 5 => 'PP00170G00040',
(int) 6 => 'PP00176G00580',
(int) 7 => 'PP00308G00070',
(int) 8 => 'PP00087G00860',
(int) 9 => 'PP00080G00260',
(int) 10 => 'PP00376G00130',
(int) 11 => 'PP00060G00520',
(int) 12 => 'PP00157G00210',
(int) 13 => 'PP00190G00010',
(int) 14 => 'PP00035G01830',
(int) 15 => 'PP00019G00560',
(int) 16 => 'PP00015G02420',
(int) 17 => 'PP00100G00740',
(int) 18 => 'PP00064G00580',
(int) 19 => 'PP00020G01840'
),
'atr' => array(
(int) 0 => 'ATR_00159G00100',
(int) 1 => 'ATR_00112G00110',
(int) 2 => 'ATR_00112G00090',
(int) 3 => 'ATR_00099G00510',
(int) 4 => 'ATR_00053G00430',
(int) 5 => 'ATR_00099G00500',
(int) 6 => 'ATR_00010G01270',
(int) 7 => 'ATR_00024G02540',
(int) 8 => 'ATR_00027G01540',
(int) 9 => 'ATR_00029G00790',
(int) 10 => 'ATR_00018G01670',
(int) 11 => 'ATR_00071G00350',
(int) 12 => 'ATR_00071G00690',
(int) 13 => 'ATR_00003G00840',
(int) 14 => 'ATR_00007G01080',
(int) 15 => 'ATR_00066G01210',
(int) 16 => 'ATR_00007G01050',
(int) 17 => 'ATR_00027G01590',
(int) 18 => 'ATR_00007G00990',
(int) 19 => 'ATR_00007G00970',
(int) 20 => 'ATR_00224G00060',
(int) 21 => 'ATR_00224G00070',
(int) 22 => 'ATR_00007G01000',
(int) 23 => 'ATR_00007G01020',
(int) 24 => 'ATR_00077G00560',
(int) 25 => 'ATR_00007G01040',
(int) 26 => 'ATR_00007G00960',
(int) 27 => 'ATR_00027G01560'
),
'cvu' => array(
(int) 0 => 'CV00G18710',
(int) 1 => 'CV00G58180',
(int) 2 => 'CV00G13860',
(int) 3 => 'CV00G28250',
(int) 4 => 'CV00G01670',
(int) 5 => 'CV00G83580',
(int) 6 => 'CV00G20950',
(int) 7 => 'CV00G20930',
(int) 8 => 'CV00G83570'
),
'osa' => array(
(int) 0 => 'OS09G36350',
(int) 1 => 'OS02G50490',
(int) 2 => 'OS08G32940',
(int) 3 => 'OS01G12070',
(int) 4 => 'OS01G21070',
(int) 5 => 'OS04G57860',
(int) 6 => 'OS06G50140',
(int) 7 => 'OS05G12150',
(int) 8 => 'OS01G12030',
(int) 9 => 'OS09G23084',
(int) 10 => 'OS02G50040',
(int) 11 => 'OS02G03120',
(int) 12 => 'OS02G05744',
(int) 13 => 'OS08G29770',
(int) 14 => 'OS06G14540',
(int) 15 => 'OS09G36060',
(int) 16 => 'OS04G41970',
(int) 17 => 'OS08G02220',
(int) 18 => 'OS04G36610',
(int) 19 => 'OS02G53820',
(int) 20 => 'OS05G03840',
(int) 21 => 'OS03G52630',
(int) 22 => 'OS03G21210',
(int) 23 => 'OS06G13830',
(int) 24 => 'OS12G24040'
),
'hsp' => array(
(int) 0 => 'HE0000G29710',
(int) 1 => 'HE0000G53560',
(int) 2 => 'HE0000G12380'
),
'nga' => array(
(int) 0 => 'Naga_100014g5',
(int) 1 => 'Naga_100360g3',
(int) 2 => 'Naga_100054g30',
(int) 3 => 'Naga_100747g2',
(int) 4 => 'Naga_100897g4'
),
'apr' => array(
(int) 0 => 'AP00G14380',
(int) 1 => 'AP00G47660',
(int) 2 => 'AP00G47670',
(int) 3 => 'AP00G47650',
(int) 4 => 'AP00G63720',
(int) 5 => 'AP00G07320',
(int) 6 => 'AP00G56700'
),
'pse3' => array(
(int) 0 => 'PI00G51860',
(int) 1 => 'PI00G21600',
(int) 2 => 'PI00G46760',
(int) 3 => 'PI00G20770'
),
'vca' => array(
(int) 0 => 'VC00G86050',
(int) 1 => 'VC00G86060',
(int) 2 => 'VC00G96420'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.08g01580',
(int) 1 => 'RCC4223.02g11150',
(int) 2 => 'RCC4223.02g04720',
(int) 3 => 'RCC4223.10g01020'
),
'cre' => array(
(int) 0 => 'CR17G07600',
(int) 1 => 'CR17G07580',
(int) 2 => 'CR06G04900'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G00250',
(int) 1 => 'CNC64A_010G00230',
(int) 2 => 'CNC64A_004G00230',
(int) 3 => 'CNC64A_012G02740',
(int) 4 => 'CNC64A_025G01110'
)
)
$gene_id = 'DDB_G0286321'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'DDB_G0286321'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OL07G03630'
$gf_placeholder = 'HOM03P003032'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_708G00010',
'e_value' => '3e-07',
'bit_score' => '52.8',
'alignment_length' => '43',
'identity_percentage' => '53.49',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P073994'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_708G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'DDB_G0286321' => array(
'gene_id' => 'DDB_G0286321',
'e_value' => '0.0',
'bit_score' => '1139',
'alignment_length' => '558',
'identity_percentage' => '100.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0286277' => array(
'gene_id' => 'DDB_G0286277',
'e_value' => '0.0',
'bit_score' => '568',
'alignment_length' => '437',
'identity_percentage' => '65.22',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0284239' => array(
'gene_id' => 'DDB_G0284239',
'e_value' => '2e-162',
'bit_score' => '486',
'alignment_length' => '441',
'identity_percentage' => '56.24',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271134' => array(
'gene_id' => 'DDB_G0271134',
'e_value' => '2e-155',
'bit_score' => '468',
'alignment_length' => '465',
'identity_percentage' => '52.69',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0271314' => array(
'gene_id' => 'DDB_G0271314',
'e_value' => '3e-154',
'bit_score' => '457',
'alignment_length' => '459',
'identity_percentage' => '52.29',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0284295' => array(
'gene_id' => 'DDB_G0284295',
'e_value' => '1e-138',
'bit_score' => '417',
'alignment_length' => '431',
'identity_percentage' => '51.28',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'AC00G88310' => array(
'gene_id' => 'AC00G88310',
'e_value' => '1e-81',
'bit_score' => '269',
'alignment_length' => '453',
'identity_percentage' => '36.20',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AT2G32990' => array(
'gene_id' => 'AT2G32990',
'e_value' => '7e-81',
'bit_score' => '269',
'alignment_length' => '468',
'identity_percentage' => '36.97',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00037G01710' => array(
'gene_id' => 'PP00037G01710',
'e_value' => '2e-80',
'bit_score' => '271',
'alignment_length' => '567',
'identity_percentage' => '33.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00149G00070' => array(
'gene_id' => 'PP00149G00070',
'e_value' => '3e-77',
'bit_score' => '262',
'alignment_length' => '497',
'identity_percentage' => '35.21',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G19940' => array(
'gene_id' => 'AT1G19940',
'e_value' => '9e-77',
'bit_score' => '258',
'alignment_length' => '468',
'identity_percentage' => '37.18',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00159G00100' => array(
'gene_id' => 'ATR_00159G00100',
'e_value' => '1e-76',
'bit_score' => '260',
'alignment_length' => '497',
'identity_percentage' => '33.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CV00G18710' => array(
'gene_id' => 'CV00G18710',
'e_value' => '3e-76',
'bit_score' => '255',
'alignment_length' => '450',
'identity_percentage' => '34.00',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'AT4G11050' => array(
'gene_id' => 'AT4G11050',
'e_value' => '8e-75',
'bit_score' => '256',
'alignment_length' => '476',
'identity_percentage' => '35.50',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G37000' => array(
'gene_id' => 'AC00G37000',
'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '444',
'identity_percentage' => '34.68',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'OS09G36350' => array(
'gene_id' => 'OS09G36350',
'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '483',
'identity_percentage' => '35.82',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00112G00110' => array(
'gene_id' => 'ATR_00112G00110',
'e_value' => '4e-74',
'bit_score' => '251',
'alignment_length' => '494',
'identity_percentage' => '35.63',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G75680' => array(
'gene_id' => 'AT1G75680',
'e_value' => '1e-73',
'bit_score' => '250',
'alignment_length' => '450',
'identity_percentage' => '37.78',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT1G64390' => array(
'gene_id' => 'AT1G64390',
'e_value' => '1e-73',
'bit_score' => '252',
'alignment_length' => '471',
'identity_percentage' => '35.03',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44550' => array(
'gene_id' => 'AT2G44550',
'e_value' => '2e-73',
'bit_score' => '249',
'alignment_length' => '463',
'identity_percentage' => '35.85',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS02G50490' => array(
'gene_id' => 'OS02G50490',
'e_value' => '2e-73',
'bit_score' => '250',
'alignment_length' => '479',
'identity_percentage' => '35.28',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44560' => array(
'gene_id' => 'AT2G44560',
'e_value' => '3e-73',
'bit_score' => '248',
'alignment_length' => '465',
'identity_percentage' => '35.91',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G29710' => array(
'gene_id' => 'HE0000G29710',
'e_value' => '3e-73',
'bit_score' => '247',
'alignment_length' => '453',
'identity_percentage' => '35.98',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44570' => array(
'gene_id' => 'AT2G44570',
'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '496',
'identity_percentage' => '32.86',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT2G44540' => array(
'gene_id' => 'AT2G44540',
'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '488',
'identity_percentage' => '34.63',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS08G32940' => array(
'gene_id' => 'OS08G32940',
'e_value' => '5e-72',
'bit_score' => '246',
'alignment_length' => '473',
'identity_percentage' => '34.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS01G12070' => array(
'gene_id' => 'OS01G12070',
'e_value' => '1e-71',
'bit_score' => '248',
'alignment_length' => '472',
'identity_percentage' => '34.32',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS01G21070' => array(
'gene_id' => 'OS01G21070',
'e_value' => '1e-71',
'bit_score' => '244',
'alignment_length' => '465',
'identity_percentage' => '35.05',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100014g5' => array(
'gene_id' => 'Naga_100014g5',
'e_value' => '3e-71',
'bit_score' => '242',
'alignment_length' => '437',
'identity_percentage' => '37.07',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OS04G57860' => array(
'gene_id' => 'OS04G57860',
'e_value' => '3e-71',
'bit_score' => '246',
'alignment_length' => '480',
'identity_percentage' => '33.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00112G00090' => array(
'gene_id' => 'ATR_00112G00090',
'e_value' => '5e-71',
'bit_score' => '242',
'alignment_length' => '495',
'identity_percentage' => '35.15',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PP00100G00830' => array(
'gene_id' => 'PP00100G00830',
'e_value' => '7e-71',
'bit_score' => '242',
'alignment_length' => '496',
'identity_percentage' => '33.47',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS06G50140' => array(
'gene_id' => 'OS06G50140',
'e_value' => '2e-70',
'bit_score' => '241',
'alignment_length' => '474',
'identity_percentage' => '34.60',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT1G70710' => array(
'gene_id' => 'AT1G70710',
'e_value' => '3e-70',
'bit_score' => '240',
'alignment_length' => '470',
'identity_percentage' => '34.47',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G02290' => array(
'gene_id' => 'AT4G02290',
'e_value' => '3e-70',
'bit_score' => '241',
'alignment_length' => '471',
'identity_percentage' => '35.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00099G00510' => array(
'gene_id' => 'ATR_00099G00510',
'e_value' => '5e-70',
'bit_score' => '239',
'alignment_length' => '495',
'identity_percentage' => '33.54',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100360g3' => array(
'gene_id' => 'Naga_100360g3',
'e_value' => '6e-70',
'bit_score' => '239',
'alignment_length' => '426',
'identity_percentage' => '33.80',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'OS05G12150' => array(
'gene_id' => 'OS05G12150',
'e_value' => '8e-70',
'bit_score' => '242',
'alignment_length' => '534',
'identity_percentage' => '30.71',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS01G12030' => array(
'gene_id' => 'OS01G12030',
'e_value' => '3e-69',
'bit_score' => '241',
'alignment_length' => '473',
'identity_percentage' => '34.04',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00053G00430' => array(
'gene_id' => 'ATR_00053G00430',
'e_value' => '6e-69',
'bit_score' => '237',
'alignment_length' => '471',
'identity_percentage' => '33.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G02800' => array(
'gene_id' => 'AT1G02800',
'e_value' => '7e-69',
'bit_score' => '237',
'alignment_length' => '462',
'identity_percentage' => '36.15',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS09G23084' => array(
'gene_id' => 'OS09G23084',
'e_value' => '1e-68',
'bit_score' => '237',
'alignment_length' => '479',
'identity_percentage' => '34.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00099G00500' => array(
'gene_id' => 'ATR_00099G00500',
'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '490',
'identity_percentage' => '35.92',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00010G01270' => array(
'gene_id' => 'ATR_00010G01270',
'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '478',
'identity_percentage' => '32.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00024G02540' => array(
'gene_id' => 'ATR_00024G02540',
'e_value' => '3e-68',
'bit_score' => '234',
'alignment_length' => '464',
'identity_percentage' => '35.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100054g30' => array(
'gene_id' => 'Naga_100054g30',
'e_value' => '6e-68',
'bit_score' => '234',
'alignment_length' => '427',
'identity_percentage' => '34.89',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G09740' => array(
'gene_id' => 'AT4G09740',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT4G23560' => array(
'gene_id' => 'AT4G23560',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.41',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00100G00730' => array(
'gene_id' => 'PP00100G00730',
'e_value' => '3e-67',
'bit_score' => '233',
'alignment_length' => '499',
'identity_percentage' => '33.87',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00053G00510' => array(
'gene_id' => 'PP00053G00510',
'e_value' => '1e-66',
'bit_score' => '234',
'alignment_length' => '510',
'identity_percentage' => '33.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00170G00040' => array(
'gene_id' => 'PP00170G00040',
'e_value' => '2e-66',
'bit_score' => '230',
'alignment_length' => '468',
'identity_percentage' => '33.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00176G00580' => array(
'gene_id' => 'PP00176G00580',
'e_value' => '3e-66',
'bit_score' => '233',
'alignment_length' => '516',
'identity_percentage' => '33.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G48930' => array(
'gene_id' => 'AT1G48930',
'e_value' => '4e-66',
'bit_score' => '232',
'alignment_length' => '473',
'identity_percentage' => '36.36',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT3G43860' => array(
'gene_id' => 'AT3G43860',
'e_value' => '1e-65',
'bit_score' => '228',
'alignment_length' => '488',
'identity_percentage' => '33.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS02G50040' => array(
'gene_id' => 'OS02G50040',
'e_value' => '2e-65',
'bit_score' => '228',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0283077' => array(
'gene_id' => 'DDB_G0283077',
'e_value' => '2e-65',
'bit_score' => '230',
'alignment_length' => '465',
'identity_percentage' => '34.19',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00027G01540' => array(
'gene_id' => 'ATR_00027G01540',
'e_value' => '2e-65',
'bit_score' => '227',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G23210' => array(
'gene_id' => 'AT1G23210',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '492',
'identity_percentage' => '31.30',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS02G03120' => array(
'gene_id' => 'OS02G03120',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '504',
'identity_percentage' => '31.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AP00G14380' => array(
'gene_id' => 'AP00G14380',
'e_value' => '4e-65',
'bit_score' => '230',
'alignment_length' => '444',
'identity_percentage' => '35.14',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'OS02G05744' => array(
'gene_id' => 'OS02G05744',
'e_value' => '2e-64',
'bit_score' => '226',
'alignment_length' => '481',
'identity_percentage' => '32.64',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00308G00070' => array(
'gene_id' => 'PP00308G00070',
'e_value' => '2e-64',
'bit_score' => '225',
'alignment_length' => '485',
'identity_percentage' => '33.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00087G00860' => array(
'gene_id' => 'PP00087G00860',
'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '470',
'identity_percentage' => '34.26',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00080G00260' => array(
'gene_id' => 'PP00080G00260',
'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '466',
'identity_percentage' => '34.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00376G00130' => array(
'gene_id' => 'PP00376G00130',
'e_value' => '3e-64',
'bit_score' => '224',
'alignment_length' => '467',
'identity_percentage' => '33.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS08G29770' => array(
'gene_id' => 'OS08G29770',
'e_value' => '4e-64',
'bit_score' => '224',
'alignment_length' => '454',
'identity_percentage' => '33.92',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS06G14540' => array(
'gene_id' => 'OS06G14540',
'e_value' => '1e-63',
'bit_score' => '223',
'alignment_length' => '481',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00060G00520' => array(
'gene_id' => 'PP00060G00520',
'e_value' => '6e-63',
'bit_score' => '222',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00029G00790' => array(
'gene_id' => 'ATR_00029G00790',
'e_value' => '1e-62',
'bit_score' => '223',
'alignment_length' => '467',
'identity_percentage' => '34.90',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT1G71380' => array(
'gene_id' => 'AT1G71380',
'e_value' => '2e-62',
'bit_score' => '219',
'alignment_length' => '491',
'identity_percentage' => '34.01',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS09G36060' => array(
'gene_id' => 'OS09G36060',
'e_value' => '8e-62',
'bit_score' => '218',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00157G00210' => array(
'gene_id' => 'PP00157G00210',
'e_value' => '1e-61',
'bit_score' => '219',
'alignment_length' => '486',
'identity_percentage' => '34.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G22880' => array(
'gene_id' => 'AT1G22880',
'e_value' => '2e-61',
'bit_score' => '216',
'alignment_length' => '496',
'identity_percentage' => '34.48',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00018G01670' => array(
'gene_id' => 'ATR_00018G01670',
'e_value' => '6e-61',
'bit_score' => '215',
'alignment_length' => '426',
'identity_percentage' => '34.27',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AT4G39010' => array(
'gene_id' => 'AT4G39010',
'e_value' => '7e-61',
'bit_score' => '215',
'alignment_length' => '474',
'identity_percentage' => '32.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS04G41970' => array(
'gene_id' => 'OS04G41970',
'e_value' => '1e-60',
'bit_score' => '217',
'alignment_length' => '486',
'identity_percentage' => '34.77',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS08G02220' => array(
'gene_id' => 'OS08G02220',
'e_value' => '3e-60',
'bit_score' => '214',
'alignment_length' => '480',
'identity_percentage' => '30.63',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0279995' => array(
'gene_id' => 'DDB_G0279995',
'e_value' => '3e-60',
'bit_score' => '219',
'alignment_length' => '472',
'identity_percentage' => '33.26',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'PI00G51860' => array(
'gene_id' => 'PI00G51860',
'e_value' => '9e-60',
'bit_score' => '213',
'alignment_length' => '452',
'identity_percentage' => '32.96',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PP00190G00010' => array(
'gene_id' => 'PP00190G00010',
'e_value' => '9e-60',
'bit_score' => '214',
'alignment_length' => '489',
'identity_percentage' => '34.97',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100747g2' => array(
'gene_id' => 'Naga_100747g2',
'e_value' => '1e-59',
'bit_score' => '212',
'alignment_length' => '451',
'identity_percentage' => '33.92',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'PP00035G01830' => array(
'gene_id' => 'PP00035G01830',
'e_value' => '3e-59',
'bit_score' => '213',
'alignment_length' => '487',
'identity_percentage' => '34.70',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00019G00560' => array(
'gene_id' => 'PP00019G00560',
'e_value' => '8e-59',
'bit_score' => '209',
'alignment_length' => '469',
'identity_percentage' => '33.48',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS04G36610' => array(
'gene_id' => 'OS04G36610',
'e_value' => '5e-58',
'bit_score' => '207',
'alignment_length' => '468',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'CV00G58180' => array(
'gene_id' => 'CV00G58180',
'e_value' => '7e-58',
'bit_score' => '210',
'alignment_length' => '489',
'identity_percentage' => '30.47',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'OS02G53820' => array(
'gene_id' => 'OS02G53820',
'e_value' => '3e-56',
'bit_score' => '202',
'alignment_length' => '462',
'identity_percentage' => '30.52',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AT4G24260' => array(
'gene_id' => 'AT4G24260',
'e_value' => '6e-56',
'bit_score' => '204',
'alignment_length' => '495',
'identity_percentage' => '32.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AT5G49720' => array(
'gene_id' => 'AT5G49720',
'e_value' => '1e-55',
'bit_score' => '203',
'alignment_length' => '490',
'identity_percentage' => '34.29',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'PP00015G02420' => array(
'gene_id' => 'PP00015G02420',
'e_value' => '2e-55',
'bit_score' => '202',
'alignment_length' => '473',
'identity_percentage' => '32.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT4G39000' => array(
'gene_id' => 'AT4G39000',
'e_value' => '3e-55',
'bit_score' => '199',
'alignment_length' => '510',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'OS05G03840' => array(
'gene_id' => 'OS05G03840',
'e_value' => '5e-55',
'bit_score' => '199',
'alignment_length' => '519',
'identity_percentage' => '28.90',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'OS03G52630' => array(
'gene_id' => 'OS03G52630',
'e_value' => '8e-55',
'bit_score' => '201',
'alignment_length' => '519',
'identity_percentage' => '32.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G53560' => array(
'gene_id' => 'HE0000G53560',
'e_value' => '5e-54',
'bit_score' => '195',
'alignment_length' => '445',
'identity_percentage' => '30.11',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'OS03G21210' => array(
'gene_id' => 'OS03G21210',
'e_value' => '2e-52',
'bit_score' => '194',
'alignment_length' => '482',
'identity_percentage' => '32.16',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00071G00350' => array(
'gene_id' => 'ATR_00071G00350',
'e_value' => '1e-50',
'bit_score' => '189',
'alignment_length' => '500',
'identity_percentage' => '33.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'VC00G86050' => array(
'gene_id' => 'VC00G86050',
'e_value' => '2e-50',
'bit_score' => '189',
'alignment_length' => '518',
'identity_percentage' => '30.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'AC00G15120' => array(
'gene_id' => 'AC00G15120',
'e_value' => '4e-50',
'bit_score' => '191',
'alignment_length' => '476',
'identity_percentage' => '30.88',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.08g01580' => array(
'gene_id' => 'RCC4223.08g01580',
'e_value' => '7e-50',
'bit_score' => '185',
'alignment_length' => '469',
'identity_percentage' => '30.92',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PP00100G00740' => array(
'gene_id' => 'PP00100G00740',
'e_value' => '1e-49',
'bit_score' => '185',
'alignment_length' => '517',
'identity_percentage' => '29.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'VC00G86060' => array(
'gene_id' => 'VC00G86060',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '518',
'identity_percentage' => '31.08',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'PP00064G00580' => array(
'gene_id' => 'PP00064G00580',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '490',
'identity_percentage' => '32.86',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT1G65610' => array(
'gene_id' => 'AT1G65610',
'e_value' => '2e-49',
'bit_score' => '185',
'alignment_length' => '491',
'identity_percentage' => '31.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AP00G47660' => array(
'gene_id' => 'AP00G47660',
'e_value' => '2e-48',
'bit_score' => '181',
'alignment_length' => '449',
'identity_percentage' => '30.29',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00071G00690' => array(
'gene_id' => 'ATR_00071G00690',
'e_value' => '2e-48',
'bit_score' => '182',
'alignment_length' => '503',
'identity_percentage' => '31.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CR17G07600' => array(
'gene_id' => 'CR17G07600',
'e_value' => '1e-47',
'bit_score' => '181',
'alignment_length' => '500',
'identity_percentage' => '30.60',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G00250' => array(
'gene_id' => 'CNC64A_004G00250',
'e_value' => '6e-45',
'bit_score' => '172',
'alignment_length' => '448',
'identity_percentage' => '29.24',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'AC00G54710' => array(
'gene_id' => 'AC00G54710',
'e_value' => '2e-44',
'bit_score' => '174',
'alignment_length' => '466',
'identity_percentage' => '30.47',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_010G00230' => array(
'gene_id' => 'CNC64A_010G00230',
'e_value' => '1e-43',
'bit_score' => '168',
'alignment_length' => '456',
'identity_percentage' => '26.97',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'CR17G07580' => array(
'gene_id' => 'CR17G07580',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '504',
'identity_percentage' => '30.75',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_004G00230' => array(
'gene_id' => 'CNC64A_004G00230',
'e_value' => '3e-43',
'bit_score' => '165',
'alignment_length' => '475',
'identity_percentage' => '27.58',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'AP00G47670' => array(
'gene_id' => 'AP00G47670',
'e_value' => '4e-40',
'bit_score' => '154',
'alignment_length' => '380',
'identity_percentage' => '29.21',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'CV00G13860' => array(
'gene_id' => 'CV00G13860',
'e_value' => '4e-40',
'bit_score' => '161',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G28250' => array(
'gene_id' => 'CV00G28250',
'e_value' => '2e-39',
'bit_score' => '159',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00003G00840' => array(
'gene_id' => 'ATR_00003G00840',
'e_value' => '3e-39',
'bit_score' => '152',
'alignment_length' => '341',
'identity_percentage' => '34.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AP00G47650' => array(
'gene_id' => 'AP00G47650',
'e_value' => '7e-39',
'bit_score' => '152',
'alignment_length' => '400',
'identity_percentage' => '29.75',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'AT4G38990' => array(
'gene_id' => 'AT4G38990',
'e_value' => '1e-38',
'bit_score' => '149',
'alignment_length' => '342',
'identity_percentage' => '32.46',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01080' => array(
'gene_id' => 'ATR_00007G01080',
'e_value' => '6e-38',
'bit_score' => '143',
'alignment_length' => '184',
'identity_percentage' => '40.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AC00G30000' => array(
'gene_id' => 'AC00G30000',
'e_value' => '4e-37',
'bit_score' => '152',
'alignment_length' => '458',
'identity_percentage' => '30.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CR06G04900' => array(
'gene_id' => 'CR06G04900',
'e_value' => '4e-37',
'bit_score' => '151',
'alignment_length' => '487',
'identity_percentage' => '27.10',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00066G01210' => array(
'gene_id' => 'ATR_00066G01210',
'e_value' => '1e-35',
'bit_score' => '145',
'alignment_length' => '250',
'identity_percentage' => '37.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'PI00G21600' => array(
'gene_id' => 'PI00G21600',
'e_value' => '2e-35',
'bit_score' => '145',
'alignment_length' => '465',
'identity_percentage' => '30.75',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g11150' => array(
'gene_id' => 'RCC4223.02g11150',
'e_value' => '2e-35',
'bit_score' => '144',
'alignment_length' => '465',
'identity_percentage' => '29.03',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'AP00G63720' => array(
'gene_id' => 'AP00G63720',
'e_value' => '5e-35',
'bit_score' => '145',
'alignment_length' => '452',
'identity_percentage' => '26.77',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'PP00020G01840' => array(
'gene_id' => 'PP00020G01840',
'e_value' => '5e-35',
'bit_score' => '139',
'alignment_length' => '391',
'identity_percentage' => '28.90',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01050' => array(
'gene_id' => 'ATR_00007G01050',
'e_value' => '8e-35',
'bit_score' => '135',
'alignment_length' => '188',
'identity_percentage' => '42.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CV00G01670' => array(
'gene_id' => 'CV00G01670',
'e_value' => '5e-34',
'bit_score' => '142',
'alignment_length' => '483',
'identity_percentage' => '26.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'CV00G83580' => array(
'gene_id' => 'CV00G83580',
'e_value' => '1e-33',
'bit_score' => '140',
'alignment_length' => '484',
'identity_percentage' => '25.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.02g04720' => array(
'gene_id' => 'RCC4223.02g04720',
'e_value' => '9e-33',
'bit_score' => '137',
'alignment_length' => '454',
'identity_percentage' => '27.09',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00027G01590' => array(
'gene_id' => 'ATR_00027G01590',
'e_value' => '9e-32',
'bit_score' => '127',
'alignment_length' => '189',
'identity_percentage' => '37.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.10g01020' => array(
'gene_id' => 'RCC4223.10g01020',
'e_value' => '3e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'PI00G46760' => array(
'gene_id' => 'PI00G46760',
'e_value' => '4e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'PI00G20770' => array(
'gene_id' => 'PI00G20770',
'e_value' => '4e-31',
'bit_score' => '132',
'alignment_length' => '455',
'identity_percentage' => '25.93',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CV00G20950' => array(
'gene_id' => 'CV00G20950',
'e_value' => '5e-31',
'bit_score' => '132',
'alignment_length' => '453',
'identity_percentage' => '26.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'VC00G96420' => array(
'gene_id' => 'VC00G96420',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '541',
'identity_percentage' => '26.43',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G00990' => array(
'gene_id' => 'ATR_00007G00990',
'e_value' => '5e-30',
'bit_score' => '120',
'alignment_length' => '143',
'identity_percentage' => '41.26',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AC00G29940' => array(
'gene_id' => 'AC00G29940',
'e_value' => '1e-29',
'bit_score' => '128',
'alignment_length' => '507',
'identity_percentage' => '25.05',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AP00G07320' => array(
'gene_id' => 'AP00G07320',
'e_value' => '1e-28',
'bit_score' => '125',
'alignment_length' => '484',
'identity_percentage' => '25.83',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'OS06G13830' => array(
'gene_id' => 'OS06G13830',
'e_value' => '3e-28',
'bit_score' => '120',
'alignment_length' => '374',
'identity_percentage' => '30.48',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'AC00G21030' => array(
'gene_id' => 'AC00G21030',
'e_value' => '2e-27',
'bit_score' => '121',
'alignment_length' => '527',
'identity_percentage' => '25.81',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_012G02740' => array(
'gene_id' => 'CNC64A_012G02740',
'e_value' => '2e-27',
'bit_score' => '120',
'alignment_length' => '442',
'identity_percentage' => '24.66',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'HE0000G12380' => array(
'gene_id' => 'HE0000G12380',
'e_value' => '2e-25',
'bit_score' => '113',
'alignment_length' => '388',
'identity_percentage' => '26.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
[maximum depth reached]
)
),
'AC00G21740' => array(
'gene_id' => 'AC00G21740',
'e_value' => '1e-24',
'bit_score' => '113',
'alignment_length' => '518',
'identity_percentage' => '24.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'AC00G61180' => array(
'gene_id' => 'AC00G61180',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '474',
'identity_percentage' => '25.74',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'CV00G20930' => array(
'gene_id' => 'CV00G20930',
'e_value' => '4e-24',
'bit_score' => '105',
'alignment_length' => '203',
'identity_percentage' => '31.03',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G00970' => array(
'gene_id' => 'ATR_00007G00970',
'e_value' => '5e-21',
'bit_score' => '94.4',
'alignment_length' => '120',
'identity_percentage' => '37.50',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'AP00G56700' => array(
'gene_id' => 'AP00G56700',
'e_value' => '3e-17',
'bit_score' => '89.4',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00224G00060' => array(
'gene_id' => 'ATR_00224G00060',
'e_value' => '1e-16',
'bit_score' => '81.6',
'alignment_length' => '121',
'identity_percentage' => '42.98',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100897g4' => array(
'gene_id' => 'Naga_100897g4',
'e_value' => '3e-14',
'bit_score' => '79.0',
'alignment_length' => '210',
'identity_percentage' => '27.14',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00224G00070' => array(
'gene_id' => 'ATR_00224G00070',
'e_value' => '1e-13',
'bit_score' => '75.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01000' => array(
'gene_id' => 'ATR_00007G01000',
'e_value' => '9e-12',
'bit_score' => '68.9',
'alignment_length' => '185',
'identity_percentage' => '27.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01020' => array(
'gene_id' => 'ATR_00007G01020',
'e_value' => '2e-10',
'bit_score' => '63.5',
'alignment_length' => '118',
'identity_percentage' => '31.36',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00077G00560' => array(
'gene_id' => 'ATR_00077G00560',
'e_value' => '1e-09',
'bit_score' => '63.5',
'alignment_length' => '162',
'identity_percentage' => '25.93',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01040' => array(
'gene_id' => 'ATR_00007G01040',
'e_value' => '2e-09',
'bit_score' => '60.5',
'alignment_length' => '107',
'identity_percentage' => '34.58',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G00960' => array(
'gene_id' => 'ATR_00007G00960',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '112',
'identity_percentage' => '33.04',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_025G01110' => array(
'gene_id' => 'CNC64A_025G01110',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '80',
'identity_percentage' => '41.25',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'OS12G24040' => array(
'gene_id' => 'OS12G24040',
'e_value' => '4e-09',
'bit_score' => '63.5',
'alignment_length' => '187',
'identity_percentage' => '29.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'CV00G83570' => array(
'gene_id' => 'CV00G83570',
'e_value' => '6e-08',
'bit_score' => '59.3',
'alignment_length' => '349',
'identity_percentage' => '22.35',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00027G01560' => array(
'gene_id' => 'ATR_00027G01560',
'e_value' => '8e-08',
'bit_score' => '55.5',
'alignment_length' => '106',
'identity_percentage' => '31.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_708G00010' => array(
'gene_id' => 'CNC64A_708G00010',
'e_value' => '3e-07',
'bit_score' => '52.8',
'alignment_length' => '43',
'identity_percentage' => '53.49',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'ddi' => array(
(int) 0 => 'DDB_G0286321',
(int) 1 => 'DDB_G0286277',
(int) 2 => 'DDB_G0284239',
(int) 3 => 'DDB_G0271134',
(int) 4 => 'DDB_G0271314',
(int) 5 => 'DDB_G0284295',
(int) 6 => 'DDB_G0283077',
(int) 7 => 'DDB_G0279995'
),
'acg' => array(
(int) 0 => 'AC00G88310',
(int) 1 => 'AC00G37000',
(int) 2 => 'AC00G15120',
(int) 3 => 'AC00G54710',
(int) 4 => 'AC00G30000',
(int) 5 => 'AC00G29940',
(int) 6 => 'AC00G21030',
(int) 7 => 'AC00G21740',
(int) 8 => 'AC00G61180'
),
'ath' => array(
(int) 0 => 'AT2G32990',
(int) 1 => 'AT1G19940',
(int) 2 => 'AT4G11050',
(int) 3 => 'AT1G75680',
(int) 4 => 'AT1G64390',
(int) 5 => 'AT2G44550',
(int) 6 => 'AT2G44560',
(int) 7 => 'AT2G44570',
(int) 8 => 'AT2G44540',
(int) 9 => 'AT1G70710',
(int) 10 => 'AT4G02290',
(int) 11 => 'AT1G02800',
(int) 12 => 'AT4G09740',
(int) 13 => 'AT4G23560',
(int) 14 => 'AT1G48930',
(int) 15 => 'AT3G43860',
(int) 16 => 'AT1G23210',
(int) 17 => 'AT1G71380',
(int) 18 => 'AT1G22880',
(int) 19 => 'AT4G39010',
(int) 20 => 'AT4G24260',
(int) 21 => 'AT5G49720',
(int) 22 => 'AT4G39000',
(int) 23 => 'AT1G65610',
(int) 24 => 'AT4G38990'
),
'ppa' => array(
(int) 0 => 'PP00037G01710',
(int) 1 => 'PP00149G00070',
(int) 2 => 'PP00100G00830',
(int) 3 => 'PP00100G00730',
(int) 4 => 'PP00053G00510',
(int) 5 => 'PP00170G00040',
(int) 6 => 'PP00176G00580',
(int) 7 => 'PP00308G00070',
(int) 8 => 'PP00087G00860',
(int) 9 => 'PP00080G00260',
(int) 10 => 'PP00376G00130',
(int) 11 => 'PP00060G00520',
(int) 12 => 'PP00157G00210',
(int) 13 => 'PP00190G00010',
(int) 14 => 'PP00035G01830',
(int) 15 => 'PP00019G00560',
(int) 16 => 'PP00015G02420',
(int) 17 => 'PP00100G00740',
(int) 18 => 'PP00064G00580',
(int) 19 => 'PP00020G01840'
),
'atr' => array(
(int) 0 => 'ATR_00159G00100',
(int) 1 => 'ATR_00112G00110',
(int) 2 => 'ATR_00112G00090',
(int) 3 => 'ATR_00099G00510',
(int) 4 => 'ATR_00053G00430',
(int) 5 => 'ATR_00099G00500',
(int) 6 => 'ATR_00010G01270',
(int) 7 => 'ATR_00024G02540',
(int) 8 => 'ATR_00027G01540',
(int) 9 => 'ATR_00029G00790',
(int) 10 => 'ATR_00018G01670',
(int) 11 => 'ATR_00071G00350',
(int) 12 => 'ATR_00071G00690',
(int) 13 => 'ATR_00003G00840',
(int) 14 => 'ATR_00007G01080',
(int) 15 => 'ATR_00066G01210',
(int) 16 => 'ATR_00007G01050',
(int) 17 => 'ATR_00027G01590',
(int) 18 => 'ATR_00007G00990',
(int) 19 => 'ATR_00007G00970',
(int) 20 => 'ATR_00224G00060',
(int) 21 => 'ATR_00224G00070',
(int) 22 => 'ATR_00007G01000',
(int) 23 => 'ATR_00007G01020',
(int) 24 => 'ATR_00077G00560',
(int) 25 => 'ATR_00007G01040',
(int) 26 => 'ATR_00007G00960',
(int) 27 => 'ATR_00027G01560'
),
'cvu' => array(
(int) 0 => 'CV00G18710',
(int) 1 => 'CV00G58180',
(int) 2 => 'CV00G13860',
(int) 3 => 'CV00G28250',
(int) 4 => 'CV00G01670',
(int) 5 => 'CV00G83580',
(int) 6 => 'CV00G20950',
(int) 7 => 'CV00G20930',
(int) 8 => 'CV00G83570'
),
'osa' => array(
(int) 0 => 'OS09G36350',
(int) 1 => 'OS02G50490',
(int) 2 => 'OS08G32940',
(int) 3 => 'OS01G12070',
(int) 4 => 'OS01G21070',
(int) 5 => 'OS04G57860',
(int) 6 => 'OS06G50140',
(int) 7 => 'OS05G12150',
(int) 8 => 'OS01G12030',
(int) 9 => 'OS09G23084',
(int) 10 => 'OS02G50040',
(int) 11 => 'OS02G03120',
(int) 12 => 'OS02G05744',
(int) 13 => 'OS08G29770',
(int) 14 => 'OS06G14540',
(int) 15 => 'OS09G36060',
(int) 16 => 'OS04G41970',
(int) 17 => 'OS08G02220',
(int) 18 => 'OS04G36610',
(int) 19 => 'OS02G53820',
(int) 20 => 'OS05G03840',
(int) 21 => 'OS03G52630',
(int) 22 => 'OS03G21210',
(int) 23 => 'OS06G13830',
(int) 24 => 'OS12G24040'
),
'hsp' => array(
(int) 0 => 'HE0000G29710',
(int) 1 => 'HE0000G53560',
(int) 2 => 'HE0000G12380'
),
'nga' => array(
(int) 0 => 'Naga_100014g5',
(int) 1 => 'Naga_100360g3',
(int) 2 => 'Naga_100054g30',
(int) 3 => 'Naga_100747g2',
(int) 4 => 'Naga_100897g4'
),
'apr' => array(
(int) 0 => 'AP00G14380',
(int) 1 => 'AP00G47660',
(int) 2 => 'AP00G47670',
(int) 3 => 'AP00G47650',
(int) 4 => 'AP00G63720',
(int) 5 => 'AP00G07320',
(int) 6 => 'AP00G56700'
),
'pse3' => array(
(int) 0 => 'PI00G51860',
(int) 1 => 'PI00G21600',
(int) 2 => 'PI00G46760',
(int) 3 => 'PI00G20770'
),
'vca' => array(
(int) 0 => 'VC00G86050',
(int) 1 => 'VC00G86060',
(int) 2 => 'VC00G96420'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.08g01580',
(int) 1 => 'RCC4223.02g11150',
(int) 2 => 'RCC4223.02g04720',
(int) 3 => 'RCC4223.10g01020'
),
'cre' => array(
(int) 0 => 'CR17G07600',
(int) 1 => 'CR17G07580',
(int) 2 => 'CR06G04900'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G00250',
(int) 1 => 'CNC64A_010G00230',
(int) 2 => 'CNC64A_004G00230',
(int) 3 => 'CNC64A_012G02740',
(int) 4 => 'CNC64A_025G01110'
)
),
'gene_id' => 'DDB_G0286321',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'DDB_G0286321',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'OL07G03630',
'gf_placeholder' => 'HOM03P003032',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'DDB_G0286321' => array(
'gene_id' => 'DDB_G0286321',
'e_value' => '0.0',
'bit_score' => '1139',
'alignment_length' => '558',
'identity_percentage' => '100.00',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0286277' => array(
'gene_id' => 'DDB_G0286277',
'e_value' => '0.0',
'bit_score' => '568',
'alignment_length' => '437',
'identity_percentage' => '65.22',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0284239' => array(
'gene_id' => 'DDB_G0284239',
'e_value' => '2e-162',
'bit_score' => '486',
'alignment_length' => '441',
'identity_percentage' => '56.24',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0271134' => array(
'gene_id' => 'DDB_G0271134',
'e_value' => '2e-155',
'bit_score' => '468',
'alignment_length' => '465',
'identity_percentage' => '52.69',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0271314' => array(
'gene_id' => 'DDB_G0271314',
'e_value' => '3e-154',
'bit_score' => '457',
'alignment_length' => '459',
'identity_percentage' => '52.29',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'DDB_G0284295' => array(
'gene_id' => 'DDB_G0284295',
'e_value' => '1e-138',
'bit_score' => '417',
'alignment_length' => '431',
'identity_percentage' => '51.28',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AC00G88310' => array(
'gene_id' => 'AC00G88310',
'e_value' => '1e-81',
'bit_score' => '269',
'alignment_length' => '453',
'identity_percentage' => '36.20',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT2G32990' => array(
'gene_id' => 'AT2G32990',
'e_value' => '7e-81',
'bit_score' => '269',
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'identity_percentage' => '36.97',
'species' => 'ath',
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'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
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'bit_score' => '271',
'alignment_length' => '567',
'identity_percentage' => '33.33',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00149G00070' => array(
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'alignment_length' => '497',
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'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
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'identity_percentage' => '37.18',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'ATR_00159G00100' => array(
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'bit_score' => '260',
'alignment_length' => '497',
'identity_percentage' => '33.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'CV00G18710' => array(
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'e_value' => '3e-76',
'bit_score' => '255',
'alignment_length' => '450',
'identity_percentage' => '34.00',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT4G11050' => array(
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'e_value' => '8e-75',
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'alignment_length' => '476',
'identity_percentage' => '35.50',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AC00G37000' => array(
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'bit_score' => '251',
'alignment_length' => '444',
'identity_percentage' => '34.68',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P106625'
)
),
'OS09G36350' => array(
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'e_value' => '3e-74',
'bit_score' => '251',
'alignment_length' => '483',
'identity_percentage' => '35.82',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'ATR_00112G00110' => array(
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'e_value' => '4e-74',
'bit_score' => '251',
'alignment_length' => '494',
'identity_percentage' => '35.63',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G75680' => array(
'gene_id' => 'AT1G75680',
'e_value' => '1e-73',
'bit_score' => '250',
'alignment_length' => '450',
'identity_percentage' => '37.78',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'AT1G64390' => array(
'gene_id' => 'AT1G64390',
'e_value' => '1e-73',
'bit_score' => '252',
'alignment_length' => '471',
'identity_percentage' => '35.03',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT2G44550' => array(
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'e_value' => '2e-73',
'bit_score' => '249',
'alignment_length' => '463',
'identity_percentage' => '35.85',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS02G50490' => array(
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'e_value' => '2e-73',
'bit_score' => '250',
'alignment_length' => '479',
'identity_percentage' => '35.28',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT2G44560' => array(
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'e_value' => '3e-73',
'bit_score' => '248',
'alignment_length' => '465',
'identity_percentage' => '35.91',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'HE0000G29710' => array(
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'e_value' => '3e-73',
'bit_score' => '247',
'alignment_length' => '453',
'identity_percentage' => '35.98',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT2G44570' => array(
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'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '496',
'identity_percentage' => '32.86',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT2G44540' => array(
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'e_value' => '6e-73',
'bit_score' => '247',
'alignment_length' => '488',
'identity_percentage' => '34.63',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS08G32940' => array(
'gene_id' => 'OS08G32940',
'e_value' => '5e-72',
'bit_score' => '246',
'alignment_length' => '473',
'identity_percentage' => '34.46',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'OS01G12070' => array(
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'e_value' => '1e-71',
'bit_score' => '248',
'alignment_length' => '472',
'identity_percentage' => '34.32',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'OS01G21070' => array(
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'e_value' => '1e-71',
'bit_score' => '244',
'alignment_length' => '465',
'identity_percentage' => '35.05',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'Naga_100014g5' => array(
'gene_id' => 'Naga_100014g5',
'e_value' => '3e-71',
'bit_score' => '242',
'alignment_length' => '437',
'identity_percentage' => '37.07',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS04G57860' => array(
'gene_id' => 'OS04G57860',
'e_value' => '3e-71',
'bit_score' => '246',
'alignment_length' => '480',
'identity_percentage' => '33.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'ATR_00112G00090' => array(
'gene_id' => 'ATR_00112G00090',
'e_value' => '5e-71',
'bit_score' => '242',
'alignment_length' => '495',
'identity_percentage' => '35.15',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00100G00830' => array(
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'e_value' => '7e-71',
'bit_score' => '242',
'alignment_length' => '496',
'identity_percentage' => '33.47',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'OS06G50140' => array(
'gene_id' => 'OS06G50140',
'e_value' => '2e-70',
'bit_score' => '241',
'alignment_length' => '474',
'identity_percentage' => '34.60',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'AT1G70710' => array(
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'e_value' => '3e-70',
'bit_score' => '240',
'alignment_length' => '470',
'identity_percentage' => '34.47',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AT4G02290' => array(
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'e_value' => '3e-70',
'bit_score' => '241',
'alignment_length' => '471',
'identity_percentage' => '35.88',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00099G00510' => array(
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'e_value' => '5e-70',
'bit_score' => '239',
'alignment_length' => '495',
'identity_percentage' => '33.54',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'Naga_100360g3' => array(
'gene_id' => 'Naga_100360g3',
'e_value' => '6e-70',
'bit_score' => '239',
'alignment_length' => '426',
'identity_percentage' => '33.80',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS05G12150' => array(
'gene_id' => 'OS05G12150',
'e_value' => '8e-70',
'bit_score' => '242',
'alignment_length' => '534',
'identity_percentage' => '30.71',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'OS01G12030' => array(
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'alignment_length' => '473',
'identity_percentage' => '34.04',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'ATR_00053G00430' => array(
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'e_value' => '6e-69',
'bit_score' => '237',
'alignment_length' => '471',
'identity_percentage' => '33.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'AT1G02800' => array(
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'bit_score' => '237',
'alignment_length' => '462',
'identity_percentage' => '36.15',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS09G23084' => array(
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'alignment_length' => '479',
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'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'ATR_00099G00500' => array(
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'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '490',
'identity_percentage' => '35.92',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00010G01270' => array(
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'e_value' => '2e-68',
'bit_score' => '235',
'alignment_length' => '478',
'identity_percentage' => '32.43',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00024G02540' => array(
'gene_id' => 'ATR_00024G02540',
'e_value' => '3e-68',
'bit_score' => '234',
'alignment_length' => '464',
'identity_percentage' => '35.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P040311'
)
),
'Naga_100054g30' => array(
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'e_value' => '6e-68',
'bit_score' => '234',
'alignment_length' => '427',
'identity_percentage' => '34.89',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT4G09740' => array(
'gene_id' => 'AT4G09740',
'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.82',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'AT4G23560' => array(
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'e_value' => '7e-68',
'bit_score' => '233',
'alignment_length' => '494',
'identity_percentage' => '34.41',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'PP00100G00730' => array(
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'e_value' => '3e-67',
'bit_score' => '233',
'alignment_length' => '499',
'identity_percentage' => '33.87',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00053G00510' => array(
'gene_id' => 'PP00053G00510',
'e_value' => '1e-66',
'bit_score' => '234',
'alignment_length' => '510',
'identity_percentage' => '33.53',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'PP00170G00040' => array(
'gene_id' => 'PP00170G00040',
'e_value' => '2e-66',
'bit_score' => '230',
'alignment_length' => '468',
'identity_percentage' => '33.12',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'PP00176G00580' => array(
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'e_value' => '3e-66',
'bit_score' => '233',
'alignment_length' => '516',
'identity_percentage' => '33.91',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G48930' => array(
'gene_id' => 'AT1G48930',
'e_value' => '4e-66',
'bit_score' => '232',
'alignment_length' => '473',
'identity_percentage' => '36.36',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT3G43860' => array(
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'e_value' => '1e-65',
'bit_score' => '228',
'alignment_length' => '488',
'identity_percentage' => '33.81',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P040311'
)
),
'OS02G50040' => array(
'gene_id' => 'OS02G50040',
'e_value' => '2e-65',
'bit_score' => '228',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'DDB_G0283077' => array(
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'e_value' => '2e-65',
'bit_score' => '230',
'alignment_length' => '465',
'identity_percentage' => '34.19',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P052440'
)
),
'ATR_00027G01540' => array(
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'e_value' => '2e-65',
'bit_score' => '227',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AT1G23210' => array(
'gene_id' => 'AT1G23210',
'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '492',
'identity_percentage' => '31.30',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS02G03120' => array(
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'e_value' => '4e-65',
'bit_score' => '226',
'alignment_length' => '504',
'identity_percentage' => '31.75',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AP00G14380' => array(
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'e_value' => '4e-65',
'bit_score' => '230',
'alignment_length' => '444',
'identity_percentage' => '35.14',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS02G05744' => array(
'gene_id' => 'OS02G05744',
'e_value' => '2e-64',
'bit_score' => '226',
'alignment_length' => '481',
'identity_percentage' => '32.64',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
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'e_value' => '2e-64',
'bit_score' => '225',
'alignment_length' => '485',
'identity_percentage' => '33.81',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'PP00087G00860' => array(
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'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '470',
'identity_percentage' => '34.26',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'PP00080G00260' => array(
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'e_value' => '2e-64',
'bit_score' => '224',
'alignment_length' => '466',
'identity_percentage' => '34.55',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00376G00130' => array(
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'e_value' => '3e-64',
'bit_score' => '224',
'alignment_length' => '467',
'identity_percentage' => '33.62',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS08G29770' => array(
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'e_value' => '4e-64',
'bit_score' => '224',
'alignment_length' => '454',
'identity_percentage' => '33.92',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012348'
)
),
'OS06G14540' => array(
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'e_value' => '1e-63',
'bit_score' => '223',
'alignment_length' => '481',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00060G00520' => array(
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'e_value' => '6e-63',
'bit_score' => '222',
'alignment_length' => '478',
'identity_percentage' => '33.05',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'ATR_00029G00790' => array(
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'e_value' => '1e-62',
'bit_score' => '223',
'alignment_length' => '467',
'identity_percentage' => '34.90',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AT1G71380' => array(
'gene_id' => 'AT1G71380',
'e_value' => '2e-62',
'bit_score' => '219',
'alignment_length' => '491',
'identity_percentage' => '34.01',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS09G36060' => array(
'gene_id' => 'OS09G36060',
'e_value' => '8e-62',
'bit_score' => '218',
'alignment_length' => '480',
'identity_percentage' => '31.25',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'PP00157G00210' => array(
'gene_id' => 'PP00157G00210',
'e_value' => '1e-61',
'bit_score' => '219',
'alignment_length' => '486',
'identity_percentage' => '34.98',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT1G22880' => array(
'gene_id' => 'AT1G22880',
'e_value' => '2e-61',
'bit_score' => '216',
'alignment_length' => '496',
'identity_percentage' => '34.48',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00018G01670' => array(
'gene_id' => 'ATR_00018G01670',
'e_value' => '6e-61',
'bit_score' => '215',
'alignment_length' => '426',
'identity_percentage' => '34.27',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'AT4G39010' => array(
'gene_id' => 'AT4G39010',
'e_value' => '7e-61',
'bit_score' => '215',
'alignment_length' => '474',
'identity_percentage' => '32.07',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS04G41970' => array(
'gene_id' => 'OS04G41970',
'e_value' => '1e-60',
'bit_score' => '217',
'alignment_length' => '486',
'identity_percentage' => '34.77',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'OS08G02220' => array(
'gene_id' => 'OS08G02220',
'e_value' => '3e-60',
'bit_score' => '214',
'alignment_length' => '480',
'identity_percentage' => '30.63',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'DDB_G0279995' => array(
'gene_id' => 'DDB_G0279995',
'e_value' => '3e-60',
'bit_score' => '219',
'alignment_length' => '472',
'identity_percentage' => '33.26',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P052440'
)
),
'PI00G51860' => array(
'gene_id' => 'PI00G51860',
'e_value' => '9e-60',
'bit_score' => '213',
'alignment_length' => '452',
'identity_percentage' => '32.96',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00190G00010' => array(
'gene_id' => 'PP00190G00010',
'e_value' => '9e-60',
'bit_score' => '214',
'alignment_length' => '489',
'identity_percentage' => '34.97',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'Naga_100747g2' => array(
'gene_id' => 'Naga_100747g2',
'e_value' => '1e-59',
'bit_score' => '212',
'alignment_length' => '451',
'identity_percentage' => '33.92',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00035G01830' => array(
'gene_id' => 'PP00035G01830',
'e_value' => '3e-59',
'bit_score' => '213',
'alignment_length' => '487',
'identity_percentage' => '34.70',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'PP00019G00560' => array(
'gene_id' => 'PP00019G00560',
'e_value' => '8e-59',
'bit_score' => '209',
'alignment_length' => '469',
'identity_percentage' => '33.48',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS04G36610' => array(
'gene_id' => 'OS04G36610',
'e_value' => '5e-58',
'bit_score' => '207',
'alignment_length' => '468',
'identity_percentage' => '30.98',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'CV00G58180' => array(
'gene_id' => 'CV00G58180',
'e_value' => '7e-58',
'bit_score' => '210',
'alignment_length' => '489',
'identity_percentage' => '30.47',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P042766'
)
),
'OS02G53820' => array(
'gene_id' => 'OS02G53820',
'e_value' => '3e-56',
'bit_score' => '202',
'alignment_length' => '462',
'identity_percentage' => '30.52',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P040311'
)
),
'AT4G24260' => array(
'gene_id' => 'AT4G24260',
'e_value' => '6e-56',
'bit_score' => '204',
'alignment_length' => '495',
'identity_percentage' => '32.12',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT5G49720' => array(
'gene_id' => 'AT5G49720',
'e_value' => '1e-55',
'bit_score' => '203',
'alignment_length' => '490',
'identity_percentage' => '34.29',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'PP00015G02420' => array(
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'e_value' => '2e-55',
'bit_score' => '202',
'alignment_length' => '473',
'identity_percentage' => '32.77',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT4G39000' => array(
'gene_id' => 'AT4G39000',
'e_value' => '3e-55',
'bit_score' => '199',
'alignment_length' => '510',
'identity_percentage' => '33.33',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'OS05G03840' => array(
'gene_id' => 'OS05G03840',
'e_value' => '5e-55',
'bit_score' => '199',
'alignment_length' => '519',
'identity_percentage' => '28.90',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P100669'
)
),
'OS03G52630' => array(
'gene_id' => 'OS03G52630',
'e_value' => '8e-55',
'bit_score' => '201',
'alignment_length' => '519',
'identity_percentage' => '32.95',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'HE0000G53560' => array(
'gene_id' => 'HE0000G53560',
'e_value' => '5e-54',
'bit_score' => '195',
'alignment_length' => '445',
'identity_percentage' => '30.11',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'OS03G21210' => array(
'gene_id' => 'OS03G21210',
'e_value' => '2e-52',
'bit_score' => '194',
'alignment_length' => '482',
'identity_percentage' => '32.16',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'ATR_00071G00350' => array(
'gene_id' => 'ATR_00071G00350',
'e_value' => '1e-50',
'bit_score' => '189',
'alignment_length' => '500',
'identity_percentage' => '33.00',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'VC00G86050' => array(
'gene_id' => 'VC00G86050',
'e_value' => '2e-50',
'bit_score' => '189',
'alignment_length' => '518',
'identity_percentage' => '30.89',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AC00G15120' => array(
'gene_id' => 'AC00G15120',
'e_value' => '4e-50',
'bit_score' => '191',
'alignment_length' => '476',
'identity_percentage' => '30.88',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'RCC4223.08g01580' => array(
'gene_id' => 'RCC4223.08g01580',
'e_value' => '7e-50',
'bit_score' => '185',
'alignment_length' => '469',
'identity_percentage' => '30.92',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00100G00740' => array(
'gene_id' => 'PP00100G00740',
'e_value' => '1e-49',
'bit_score' => '185',
'alignment_length' => '517',
'identity_percentage' => '29.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'VC00G86060' => array(
'gene_id' => 'VC00G86060',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '518',
'identity_percentage' => '31.08',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'PP00064G00580' => array(
'gene_id' => 'PP00064G00580',
'e_value' => '2e-49',
'bit_score' => '186',
'alignment_length' => '490',
'identity_percentage' => '32.86',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AT1G65610' => array(
'gene_id' => 'AT1G65610',
'e_value' => '2e-49',
'bit_score' => '185',
'alignment_length' => '491',
'identity_percentage' => '31.98',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'AP00G47660' => array(
'gene_id' => 'AP00G47660',
'e_value' => '2e-48',
'bit_score' => '181',
'alignment_length' => '449',
'identity_percentage' => '30.29',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'ATR_00071G00690' => array(
'gene_id' => 'ATR_00071G00690',
'e_value' => '2e-48',
'bit_score' => '182',
'alignment_length' => '503',
'identity_percentage' => '31.41',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P133971'
)
),
'CR17G07600' => array(
'gene_id' => 'CR17G07600',
'e_value' => '1e-47',
'bit_score' => '181',
'alignment_length' => '500',
'identity_percentage' => '30.60',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P012115'
)
),
'CNC64A_004G00250' => array(
'gene_id' => 'CNC64A_004G00250',
'e_value' => '6e-45',
'bit_score' => '172',
'alignment_length' => '448',
'identity_percentage' => '29.24',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AC00G54710' => array(
'gene_id' => 'AC00G54710',
'e_value' => '2e-44',
'bit_score' => '174',
'alignment_length' => '466',
'identity_percentage' => '30.47',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'CNC64A_010G00230' => array(
'gene_id' => 'CNC64A_010G00230',
'e_value' => '1e-43',
'bit_score' => '168',
'alignment_length' => '456',
'identity_percentage' => '26.97',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'CR17G07580' => array(
'gene_id' => 'CR17G07580',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '504',
'identity_percentage' => '30.75',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'CNC64A_004G00230' => array(
'gene_id' => 'CNC64A_004G00230',
'e_value' => '3e-43',
'bit_score' => '165',
'alignment_length' => '475',
'identity_percentage' => '27.58',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AP00G47670' => array(
'gene_id' => 'AP00G47670',
'e_value' => '4e-40',
'bit_score' => '154',
'alignment_length' => '380',
'identity_percentage' => '29.21',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P200697'
)
),
'CV00G13860' => array(
'gene_id' => 'CV00G13860',
'e_value' => '4e-40',
'bit_score' => '161',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'CV00G28250' => array(
'gene_id' => 'CV00G28250',
'e_value' => '2e-39',
'bit_score' => '159',
'alignment_length' => '497',
'identity_percentage' => '26.56',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'ATR_00003G00840' => array(
'gene_id' => 'ATR_00003G00840',
'e_value' => '3e-39',
'bit_score' => '152',
'alignment_length' => '341',
'identity_percentage' => '34.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P200670'
)
),
'AP00G47650' => array(
'gene_id' => 'AP00G47650',
'e_value' => '7e-39',
'bit_score' => '152',
'alignment_length' => '400',
'identity_percentage' => '29.75',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'AT4G38990' => array(
'gene_id' => 'AT4G38990',
'e_value' => '1e-38',
'bit_score' => '149',
'alignment_length' => '342',
'identity_percentage' => '32.46',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P206306'
)
),
'ATR_00007G01080' => array(
'gene_id' => 'ATR_00007G01080',
'e_value' => '6e-38',
'bit_score' => '143',
'alignment_length' => '184',
'identity_percentage' => '40.76',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P047991'
)
),
'AC00G30000' => array(
'gene_id' => 'AC00G30000',
'e_value' => '4e-37',
'bit_score' => '152',
'alignment_length' => '458',
'identity_percentage' => '30.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P182568'
)
),
'CR06G04900' => array(
'gene_id' => 'CR06G04900',
'e_value' => '4e-37',
'bit_score' => '151',
'alignment_length' => '487',
'identity_percentage' => '27.10',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P002415'
)
),
'ATR_00066G01210' => array(
'gene_id' => 'ATR_00066G01210',
'e_value' => '1e-35',
'bit_score' => '145',
'alignment_length' => '250',
'identity_percentage' => '37.60',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P006424'
)
),
'PI00G21600' => array(
'gene_id' => 'PI00G21600',
'e_value' => '2e-35',
'bit_score' => '145',
'alignment_length' => '465',
'identity_percentage' => '30.75',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P063424'
)
),
'RCC4223.02g11150' => array(
'gene_id' => 'RCC4223.02g11150',
'e_value' => '2e-35',
'bit_score' => '144',
'alignment_length' => '465',
'identity_percentage' => '29.03',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P063424'
)
),
'AP00G63720' => array(
'gene_id' => 'AP00G63720',
'e_value' => '5e-35',
'bit_score' => '145',
'alignment_length' => '452',
'identity_percentage' => '26.77',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000018',
'ORTHOFAM' => 'ORTHO03P006066'
)
),
'PP00020G01840' => array(
'gene_id' => 'PP00020G01840',
'e_value' => '5e-35',
'bit_score' => '139',
'alignment_length' => '391',
'identity_percentage' => '28.90',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003030'
)
),
'ATR_00007G01050' => array(
'gene_id' => 'ATR_00007G01050',
'e_value' => '8e-35',
'bit_score' => '135',
'alignment_length' => '188',
'identity_percentage' => '42.02',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P047991'
)
),
'CV00G01670' => array(
'gene_id' => 'CV00G01670',
'e_value' => '5e-34',
'bit_score' => '142',
'alignment_length' => '483',
'identity_percentage' => '26.92',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'CV00G83580' => array(
'gene_id' => 'CV00G83580',
'e_value' => '1e-33',
'bit_score' => '140',
'alignment_length' => '484',
'identity_percentage' => '25.21',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'RCC4223.02g04720' => array(
'gene_id' => 'RCC4223.02g04720',
'e_value' => '9e-33',
'bit_score' => '137',
'alignment_length' => '454',
'identity_percentage' => '27.09',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P076357'
)
),
'ATR_00027G01590' => array(
'gene_id' => 'ATR_00027G01590',
'e_value' => '9e-32',
'bit_score' => '127',
'alignment_length' => '189',
'identity_percentage' => '37.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P141509'
)
),
'RCC4223.10g01020' => array(
'gene_id' => 'RCC4223.10g01020',
'e_value' => '3e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'PI00G46760' => array(
'gene_id' => 'PI00G46760',
'e_value' => '4e-31',
'bit_score' => '133',
'alignment_length' => '418',
'identity_percentage' => '25.12',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'PI00G20770' => array(
'gene_id' => 'PI00G20770',
'e_value' => '4e-31',
'bit_score' => '132',
'alignment_length' => '455',
'identity_percentage' => '25.93',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P076357'
)
),
'CV00G20950' => array(
'gene_id' => 'CV00G20950',
'e_value' => '5e-31',
'bit_score' => '132',
'alignment_length' => '453',
'identity_percentage' => '26.27',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P019270'
)
),
'VC00G96420' => array(
'gene_id' => 'VC00G96420',
'e_value' => '2e-30',
'bit_score' => '130',
'alignment_length' => '541',
'identity_percentage' => '26.43',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P181073'
)
),
'ATR_00007G00990' => array(
'gene_id' => 'ATR_00007G00990',
'e_value' => '5e-30',
'bit_score' => '120',
'alignment_length' => '143',
'identity_percentage' => '41.26',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P188248'
)
),
'AC00G29940' => array(
'gene_id' => 'AC00G29940',
'e_value' => '1e-29',
'bit_score' => '128',
'alignment_length' => '507',
'identity_percentage' => '25.05',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'AP00G07320' => array(
'gene_id' => 'AP00G07320',
'e_value' => '1e-28',
'bit_score' => '125',
'alignment_length' => '484',
'identity_percentage' => '25.83',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'OS06G13830' => array(
'gene_id' => 'OS06G13830',
'e_value' => '3e-28',
'bit_score' => '120',
'alignment_length' => '374',
'identity_percentage' => '30.48',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P003963'
)
),
'AC00G21030' => array(
'gene_id' => 'AC00G21030',
'e_value' => '2e-27',
'bit_score' => '121',
'alignment_length' => '527',
'identity_percentage' => '25.81',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P042766'
)
),
'CNC64A_012G02740' => array(
'gene_id' => 'CNC64A_012G02740',
'e_value' => '2e-27',
'bit_score' => '120',
'alignment_length' => '442',
'identity_percentage' => '24.66',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'HE0000G12380' => array(
'gene_id' => 'HE0000G12380',
'e_value' => '2e-25',
'bit_score' => '113',
'alignment_length' => '388',
'identity_percentage' => '26.55',
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P065746'
)
),
'AC00G21740' => array(
'gene_id' => 'AC00G21740',
'e_value' => '1e-24',
'bit_score' => '113',
'alignment_length' => '518',
'identity_percentage' => '24.13',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P004878'
)
),
'AC00G61180' => array(
'gene_id' => 'AC00G61180',
'e_value' => '1e-24',
'bit_score' => '111',
'alignment_length' => '474',
'identity_percentage' => '25.74',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P065746'
)
),
'CV00G20930' => array(
'gene_id' => 'CV00G20930',
'e_value' => '4e-24',
'bit_score' => '105',
'alignment_length' => '203',
'identity_percentage' => '31.03',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P019270'
)
),
'ATR_00007G00970' => array(
'gene_id' => 'ATR_00007G00970',
'e_value' => '5e-21',
'bit_score' => '94.4',
'alignment_length' => '120',
'identity_percentage' => '37.50',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P210195'
)
),
'AP00G56700' => array(
'gene_id' => 'AP00G56700',
'e_value' => '3e-17',
'bit_score' => '89.4',
'alignment_length' => '482',
'identity_percentage' => '22.61',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P042766'
)
),
'ATR_00224G00060' => array(
'gene_id' => 'ATR_00224G00060',
'e_value' => '1e-16',
'bit_score' => '81.6',
'alignment_length' => '121',
'identity_percentage' => '42.98',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P113839'
)
),
'Naga_100897g4' => array(
'gene_id' => 'Naga_100897g4',
'e_value' => '3e-14',
'bit_score' => '79.0',
'alignment_length' => '210',
'identity_percentage' => '27.14',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P154984'
)
),
'ATR_00224G00070' => array(
'gene_id' => 'ATR_00224G00070',
'e_value' => '1e-13',
'bit_score' => '75.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P126596'
)
),
'ATR_00007G01000' => array(
'gene_id' => 'ATR_00007G01000',
'e_value' => '9e-12',
'bit_score' => '68.9',
'alignment_length' => '185',
'identity_percentage' => '27.57',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P050363'
)
),
'ATR_00007G01020' => array(
'gene_id' => 'ATR_00007G01020',
'e_value' => '2e-10',
'bit_score' => '63.5',
'alignment_length' => '118',
'identity_percentage' => '31.36',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P147912'
)
),
'ATR_00077G00560' => array(
'gene_id' => 'ATR_00077G00560',
'e_value' => '1e-09',
'bit_score' => '63.5',
'alignment_length' => '162',
'identity_percentage' => '25.93',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P088277'
)
),
'ATR_00007G01040' => array(
'gene_id' => 'ATR_00007G01040',
'e_value' => '2e-09',
'bit_score' => '60.5',
'alignment_length' => '107',
'identity_percentage' => '34.58',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P033693'
)
),
'ATR_00007G00960' => array(
'gene_id' => 'ATR_00007G00960',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '112',
'identity_percentage' => '33.04',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P050363'
)
),
'CNC64A_025G01110' => array(
'gene_id' => 'CNC64A_025G01110',
'e_value' => '3e-09',
'bit_score' => '60.8',
'alignment_length' => '80',
'identity_percentage' => '41.25',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P208443'
)
),
'OS12G24040' => array(
'gene_id' => 'OS12G24040',
'e_value' => '4e-09',
'bit_score' => '63.5',
'alignment_length' => '187',
'identity_percentage' => '29.41',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P143142'
)
),
'CV00G83570' => array(
'gene_id' => 'CV00G83570',
'e_value' => '6e-08',
'bit_score' => '59.3',
'alignment_length' => '349',
'identity_percentage' => '22.35',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P024346',
'ORTHOFAM' => 'ORTHO03P160217'
)
),
'ATR_00027G01560' => array(
'gene_id' => 'ATR_00027G01560',
'e_value' => '8e-08',
'bit_score' => '55.5',
'alignment_length' => '106',
'identity_percentage' => '31.13',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P139801'
)
),
'CNC64A_708G00010' => array(
'gene_id' => 'CNC64A_708G00010',
'e_value' => '3e-07',
'bit_score' => '52.8',
'alignment_length' => '43',
'identity_percentage' => '53.49',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P073994'
)
)
)
$similarity_hits_species = array(
'ddi' => array(
(int) 0 => 'DDB_G0286321',
(int) 1 => 'DDB_G0286277',
(int) 2 => 'DDB_G0284239',
(int) 3 => 'DDB_G0271134',
(int) 4 => 'DDB_G0271314',
(int) 5 => 'DDB_G0284295',
(int) 6 => 'DDB_G0283077',
(int) 7 => 'DDB_G0279995'
),
'acg' => array(
(int) 0 => 'AC00G88310',
(int) 1 => 'AC00G37000',
(int) 2 => 'AC00G15120',
(int) 3 => 'AC00G54710',
(int) 4 => 'AC00G30000',
(int) 5 => 'AC00G29940',
(int) 6 => 'AC00G21030',
(int) 7 => 'AC00G21740',
(int) 8 => 'AC00G61180'
),
'ath' => array(
(int) 0 => 'AT2G32990',
(int) 1 => 'AT1G19940',
(int) 2 => 'AT4G11050',
(int) 3 => 'AT1G75680',
(int) 4 => 'AT1G64390',
(int) 5 => 'AT2G44550',
(int) 6 => 'AT2G44560',
(int) 7 => 'AT2G44570',
(int) 8 => 'AT2G44540',
(int) 9 => 'AT1G70710',
(int) 10 => 'AT4G02290',
(int) 11 => 'AT1G02800',
(int) 12 => 'AT4G09740',
(int) 13 => 'AT4G23560',
(int) 14 => 'AT1G48930',
(int) 15 => 'AT3G43860',
(int) 16 => 'AT1G23210',
(int) 17 => 'AT1G71380',
(int) 18 => 'AT1G22880',
(int) 19 => 'AT4G39010',
(int) 20 => 'AT4G24260',
(int) 21 => 'AT5G49720',
(int) 22 => 'AT4G39000',
(int) 23 => 'AT1G65610',
(int) 24 => 'AT4G38990'
),
'ppa' => array(
(int) 0 => 'PP00037G01710',
(int) 1 => 'PP00149G00070',
(int) 2 => 'PP00100G00830',
(int) 3 => 'PP00100G00730',
(int) 4 => 'PP00053G00510',
(int) 5 => 'PP00170G00040',
(int) 6 => 'PP00176G00580',
(int) 7 => 'PP00308G00070',
(int) 8 => 'PP00087G00860',
(int) 9 => 'PP00080G00260',
(int) 10 => 'PP00376G00130',
(int) 11 => 'PP00060G00520',
(int) 12 => 'PP00157G00210',
(int) 13 => 'PP00190G00010',
(int) 14 => 'PP00035G01830',
(int) 15 => 'PP00019G00560',
(int) 16 => 'PP00015G02420',
(int) 17 => 'PP00100G00740',
(int) 18 => 'PP00064G00580',
(int) 19 => 'PP00020G01840'
),
'atr' => array(
(int) 0 => 'ATR_00159G00100',
(int) 1 => 'ATR_00112G00110',
(int) 2 => 'ATR_00112G00090',
(int) 3 => 'ATR_00099G00510',
(int) 4 => 'ATR_00053G00430',
(int) 5 => 'ATR_00099G00500',
(int) 6 => 'ATR_00010G01270',
(int) 7 => 'ATR_00024G02540',
(int) 8 => 'ATR_00027G01540',
(int) 9 => 'ATR_00029G00790',
(int) 10 => 'ATR_00018G01670',
(int) 11 => 'ATR_00071G00350',
(int) 12 => 'ATR_00071G00690',
(int) 13 => 'ATR_00003G00840',
(int) 14 => 'ATR_00007G01080',
(int) 15 => 'ATR_00066G01210',
(int) 16 => 'ATR_00007G01050',
(int) 17 => 'ATR_00027G01590',
(int) 18 => 'ATR_00007G00990',
(int) 19 => 'ATR_00007G00970',
(int) 20 => 'ATR_00224G00060',
(int) 21 => 'ATR_00224G00070',
(int) 22 => 'ATR_00007G01000',
(int) 23 => 'ATR_00007G01020',
(int) 24 => 'ATR_00077G00560',
(int) 25 => 'ATR_00007G01040',
(int) 26 => 'ATR_00007G00960',
(int) 27 => 'ATR_00027G01560'
),
'cvu' => array(
(int) 0 => 'CV00G18710',
(int) 1 => 'CV00G58180',
(int) 2 => 'CV00G13860',
(int) 3 => 'CV00G28250',
(int) 4 => 'CV00G01670',
(int) 5 => 'CV00G83580',
(int) 6 => 'CV00G20950',
(int) 7 => 'CV00G20930',
(int) 8 => 'CV00G83570'
),
'osa' => array(
(int) 0 => 'OS09G36350',
(int) 1 => 'OS02G50490',
(int) 2 => 'OS08G32940',
(int) 3 => 'OS01G12070',
(int) 4 => 'OS01G21070',
(int) 5 => 'OS04G57860',
(int) 6 => 'OS06G50140',
(int) 7 => 'OS05G12150',
(int) 8 => 'OS01G12030',
(int) 9 => 'OS09G23084',
(int) 10 => 'OS02G50040',
(int) 11 => 'OS02G03120',
(int) 12 => 'OS02G05744',
(int) 13 => 'OS08G29770',
(int) 14 => 'OS06G14540',
(int) 15 => 'OS09G36060',
(int) 16 => 'OS04G41970',
(int) 17 => 'OS08G02220',
(int) 18 => 'OS04G36610',
(int) 19 => 'OS02G53820',
(int) 20 => 'OS05G03840',
(int) 21 => 'OS03G52630',
(int) 22 => 'OS03G21210',
(int) 23 => 'OS06G13830',
(int) 24 => 'OS12G24040'
),
'hsp' => array(
(int) 0 => 'HE0000G29710',
(int) 1 => 'HE0000G53560',
(int) 2 => 'HE0000G12380'
),
'nga' => array(
(int) 0 => 'Naga_100014g5',
(int) 1 => 'Naga_100360g3',
(int) 2 => 'Naga_100054g30',
(int) 3 => 'Naga_100747g2',
(int) 4 => 'Naga_100897g4'
),
'apr' => array(
(int) 0 => 'AP00G14380',
(int) 1 => 'AP00G47660',
(int) 2 => 'AP00G47670',
(int) 3 => 'AP00G47650',
(int) 4 => 'AP00G63720',
(int) 5 => 'AP00G07320',
(int) 6 => 'AP00G56700'
),
'pse3' => array(
(int) 0 => 'PI00G51860',
(int) 1 => 'PI00G21600',
(int) 2 => 'PI00G46760',
(int) 3 => 'PI00G20770'
),
'vca' => array(
(int) 0 => 'VC00G86050',
(int) 1 => 'VC00G86060',
(int) 2 => 'VC00G96420'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.08g01580',
(int) 1 => 'RCC4223.02g11150',
(int) 2 => 'RCC4223.02g04720',
(int) 3 => 'RCC4223.10g01020'
),
'cre' => array(
(int) 0 => 'CR17G07600',
(int) 1 => 'CR17G07580',
(int) 2 => 'CR06G04900'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_004G00250',
(int) 1 => 'CNC64A_010G00230',
(int) 2 => 'CNC64A_004G00230',
(int) 3 => 'CNC64A_012G02740',
(int) 4 => 'CNC64A_025G01110'
)
)
$gene_id = 'DDB_G0286321'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'DDB_G0286321'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'OL07G03630'
$gf_placeholder = 'HOM03P003032'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_708G00010',
'e_value' => '3e-07',
'bit_score' => '52.8',
'alignment_length' => '43',
'identity_percentage' => '53.49',
'gf' => array(
'HOMFAM' => 'HOM03P000174',
'ORTHOFAM' => 'ORTHO03P073994'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_708G00010'include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
3e-07 |
52.8 |
43 |
53.49 |
Expansion_plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
WGMapping
BLAST
Workbench